FC925172

Overview
NameFC925172
Unique NameFC925172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length350
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.234e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_HORSE (Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 9.234e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_GORGO (Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 9.234e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_FELCA (Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.234e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_DROME (Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.234e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_CRIGR (Ubiquitin OS=Cricetulus griseus PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.234e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_CHICK (Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.234e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.234e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_CAVPO (Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.234e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.234e-33
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            IFVKTLTGKTITLEVE SDTI+NV AKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of FC925172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
UBIQ_HUMAN9.234e-3394.59Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1[more]
UBIQ_HORSE9.234e-3394.59Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2[more]
UBIQ_GORGO9.234e-3394.59Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 S... [more]
UBIQ_FELCA9.234e-3394.59Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1[more]
UBIQ_DROME9.234e-3394.59Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1... [more]
UBIQ_CRIGR9.234e-3394.59Ubiquitin OS=Cricetulus griseus PE=3 SV=1[more]
UBIQ_CHICK9.234e-3394.59Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1[more]
UBIQ_CERCA9.234e-3394.59Ubiquitin OS=Ceratitis capitata PE=1 SV=1[more]
UBIQ_CAVPO9.234e-3394.59Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1[more]
UBIQ_CANFA9.234e-3394.59Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YE20FM1 TF Citrus clementina cDNA clone KN0AAP8YE20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925172 ID=FC925172; Name=FC925172; organism=Citrus clementina; type=EST; length=350bp
CATCTGCAGCCCCTTTTATCTTCGTGAAAACCCTAACGGGAAAGACCATA
ACCCTAGAGGTCGAATCATCGGACACCATCGACAATGTCTAGGCCAAGAT
CCAGGACAAGGAGGGGATTCCACCGGACCAGCAGCGTCTCATCTTCGCCG
GAAAGCAGCTCGAGGACGGCAGAACCCTAGCCGACTACAACATCCAAAAG
GAGTCAACACTCCACCTCGTCCTCCGTCTCCGTGGTGGCGCGAAGAAGCG
TAAGAAGAAGACCTACACCAAGCCGAAAAAGATCAAGCACAAGAAGAATA
AGGTCAAGCTCGCCGTCTTGCAGTTTTACAAGGTCGATGATTCTGGAAAG
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