FC925172

Overview
NameFC925172
Unique NameFC925172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length350
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: RUB3_ARATH (NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.699e-16
Identity = 40/74 (54.05%), Postives = 54/74 (72.97%), Query Frame = 3 
Query:   18 IFVKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            I VKTLT K I +E+E +DTI+ +  +I++KEGIPP  QR+++ GKQL D  T   YN+++ S LHLVL LRGG
Sbjct:    3 IKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76
[Close]
BLAST of FC925172 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.648e-15
Identity = 38/72 (52.78%), Postives = 54/72 (75.00%), Query Frame = 3 
Query:   24 VKTLTGKTITLEVESSDTIDNV*AKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 239
            VKTLTGK I++E++ SD + ++   +++KEGIPP QQRLIF GKQ++D  T+ D ++ +   LHLVL LRGG
Sbjct:    5 VKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76
The following BLAST results are available for this feature:
BLAST of FC925172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RUB3_ARATH2.699e-1654.05NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN... [more]
RUB1_YEAST6.648e-1552.78NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YE20FM1 TF Citrus clementina cDNA clone KN0AAP8YE20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925172 ID=FC925172; Name=FC925172; organism=Citrus clementina; type=EST; length=350bp
CATCTGCAGCCCCTTTTATCTTCGTGAAAACCCTAACGGGAAAGACCATA
ACCCTAGAGGTCGAATCATCGGACACCATCGACAATGTCTAGGCCAAGAT
CCAGGACAAGGAGGGGATTCCACCGGACCAGCAGCGTCTCATCTTCGCCG
GAAAGCAGCTCGAGGACGGCAGAACCCTAGCCGACTACAACATCCAAAAG
GAGTCAACACTCCACCTCGTCCTCCGTCTCCGTGGTGGCGCGAAGAAGCG
TAAGAAGAAGACCTACACCAAGCCGAAAAAGATCAAGCACAAGAAGAATA
AGGTCAAGCTCGCCGTCTTGCAGTTTTACAAGGTCGATGATTCTGGAAAG
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