FC925180

Overview
NameFC925180
Unique NameFC925180
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925180 vs. ExPASy Swiss-Prot
Match: ARL10_MOUSE (ADP-ribosylation factor-like protein 10 OS=Mus musculus GN=Arl10 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.615e-17
Identity = 54/155 (34.84%), Postives = 85/155 (54.84%), Query Frame = 1
Query:   16 EMRILMVGLDAAGKTTILYKLK-LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG-LHSLRQRH-WYIQSTCATSGEGLYE 471
            +  +L++GLD +GK+T L  L     +   +PT GFN   +  KN    + ++G    +R  W+ +      L+F+VDS DR R+  AR EL ++L+ D   D  +++ ANKQDL  AMN  E+  +LG L S  QR  + + ++ A +G G  E
Sbjct:   76 QREVLVLGLDGSGKSTFLRMLAGKPPVEGHVPTWGFNSVRLPTKNFEVDLLEIGDSQNLRFYWKEFVNEVDVLVFMVDSTDRLRLPWARQELQKLLDRDP--DLPVVIVANKQDLSGAMNMVELQQELGLLASYNQREVFLLAASIAPAGSGFGE 228          
BLAST of FC925180 vs. ExPASy Swiss-Prot
Match: CIN4_YEAST (GTP-binding protein CIN4 OS=Saccharomyces cerevisiae GN=CIN4 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.474e-16
Identity = 48/136 (35.29%), Postives = 78/136 (57.35%), Query Frame = 1
Query:   16 EMRILMVGLDAAGKTTILYKLKLGEIVTT---IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELR---DAVLLVFANKQDLPNAMNAAEITDKLGLH 405
            E+R L++GLD +GK+TI+ KL   +       +PT+GF + ++  K+++ ++WD+GGQ  +RP W +YF  TQ +I+ +D +   R  E   EL  ++N DE R   +  ++V  NK DL        + DK  LH
Sbjct:   16 EIRCLILGLDNSGKSTIVNKLLPKDEQNNDGIMPTVGFQIHSLMIKDVTISLWDIGGQRTLRPFWDNYFDKTQAMIWCIDVSLSMRFDETLQELKELINRDENRIGYECAVIVVLNKIDL--------VEDKSELH 143          
BLAST of FC925180 vs. ExPASy Swiss-Prot
Match: SAR1_GIALA (GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.514e-16
Identity = 52/171 (30.41%), Postives = 81/171 (47.37%), Query Frame = 1
Query:   10 KIEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-----------RQRHWYIQSTCATSGEGLYEGLDWLS 489
            K +  I+ VGLD AGK+T+L  LK     T  PT     + +   +I F  +D+GG +  R LW  Y  N+ G++F+VDS D  R  E+R  L  +L+  +L    +L+ +NK D+  A++   +    G+  L            QR   +      +  G  +G  WLS
Sbjct:   18 KKKATIVFVGLDNAGKSTLLAMLKNSATTTVAPTQQPTSQELVMGSIRFKTFDLGGHEVARQLWEQYVTNSDGIVFLVDSADPSRFEESRRTLQELLDNHDLATTPILILSNKVDIQTAVSMETMVQSFGIQHLLTGKGGSNLRSDQRPLEVFPCSVINRFGYTDGFKWLS 188          
BLAST of FC925180 vs. ExPASy Swiss-Prot
Match: ARLX_DICDI (ADP-ribosylation factor-like protein DDB_G0292332 OS=Dictyostelium discoideum GN=DDB_G0292332 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.552e-16
Identity = 44/124 (35.48%), Postives = 74/124 (59.68%), Query Frame = 1
Query:   22 RILMVGLDAAGKTTILYKLK--LGEIVTT---------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF-QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 357
            +++++G++  GKTT+LY +     E +TT         IPT GFNVE++  + + F +WD+GG++  R  +RHY       +IFV DS+D + + E++ E   + N+  L++   L+ ANKQDL
Sbjct:   19 KVMILGVENVGKTTLLYNIYKFYSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDL 142          
BLAST of FC925180 vs. ExPASy Swiss-Prot
Match: ARL9_HUMAN (ADP-ribosylation factor-like protein 9 OS=Homo sapiens GN=ARL9 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.379e-14
Identity = 46/128 (35.94%), Postives = 72/128 (56.25%), Query Frame = 1
Query:   22 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 402
            +IL++GLD AGKT++L+ L    +  ++ PT GF+   +  ++      ++GG    R  W  Y      LIFVVDS D  R+ EA+  LH+++  + +    L+VFANKQDL  A +  +I + L L
Sbjct:   20 QILVLGLDGAGKTSVLHSLASNRVQHSVAPTQGFHAVCINTEDSQMEFLEIGGSKPFRSYWEMYLSKGLLLIFVVDSADHSRLPEAKKYLHQLIAANPV--LPLVVFANKQDLEAAYHITDIHEALAL 145          
BLAST of FC925180 vs. ExPASy Swiss-Prot
Match: SAR1_ENCCU (Small COPII coat GTPase SAR1 OS=Encephalitozoon cuniculi GN=SAR1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.368e-12
Identity = 40/111 (36.04%), Postives = 62/111 (55.86%), Query Frame = 1
Query:   25 ILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 357
            IL +G+D AGKTT++ KLK       +PT   +   +E  N+   V D+GG    R  WR YF +  G++F+VD +D +R  E R+    +L+ +  + A ++V  NK DL
Sbjct:   38 ILFLGIDNAGKTTLVNKLKSDSTDVYMPTHHPSTSYIEIGNLKAQVIDLGGHTAARLAWRDYFYDCHGIVFIVDVHDVERFQEVREAYETVLSLE--KRAPVVVLMNKIDL 146          
BLAST of FC925180 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.427e-11
Identity = 35/96 (36.46%), Postives = 56/96 (58.33%), Query Frame = 1
Query:   16 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN 303
            E +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W+ Y+     ++++VDS D++R  E++ EL  +L+
Sbjct:   20 EAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDSFDKERFAESKKELDALLS 115          
The following BLAST results are available for this feature:
BLAST of FC925180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARL10_MOUSE6.615e-1734.84ADP-ribosylation factor-like protein 10 OS=Mus mus... [more]
CIN4_YEAST1.474e-1635.29GTP-binding protein CIN4 OS=Saccharomyces cerevisi... [more]
SAR1_GIALA2.514e-1630.41GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR... [more]
ARLX_DICDI9.552e-1635.48ADP-ribosylation factor-like protein DDB_G0292332 ... [more]
ARL9_HUMAN1.379e-1435.94ADP-ribosylation factor-like protein 9 OS=Homo sap... [more]
SAR1_ENCCU8.368e-1236.04Small COPII coat GTPase SAR1 OS=Encephalitozoon cu... [more]
SAR1_TOBAC1.427e-1136.46GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YD13FM1 TF Citrus clementina cDNA clone KN0AAP3YD13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925180 ID=FC925180; Name=FC925180; organism=Citrus clementina; type=EST; length=738bp
CTTTTTGCTAAGATTGAGATGAGAATTCTCATGGTAGGTCTCGATGCAGC
TGGTAAGACTACTATCCTGTACAAGCTTAAGCTCGGAGAGATCGTCACCA
CCATTCCTACCATTGGATTTAATGTAGAGACCGTTGAGTATAAGAACATC
AGCTTTACTGTCTGGGATGTCGGGGGTCAAGACAAGATCCGACCTTTGTG
GAGACATTATTTCCAAAACACCCAAGGACTCATCTTTGTGGTTGACAGTA
ATGATCGCGACCGTGTGGTAGAAGCTAGGGATGAGTTGCACAGAATGTTG
AATGAGGATGAATTGAGAGATGCTGTGCTGCTTGTATTTGCTAACAAGCA
AGATCTTCCAAATGCAATGAATGCTGCTGAGATAACTGACAAGCTTGGCC
TTCACTCTCTTCGCCAGCGCCACTGGTATATCCAGAGCACATGTGCCACT
TCTGGTGAAGGGCTGTATGAGGGACTTGACTGGCTCTCAAACAACATTGC
AAACAAGGCATAGACAACTAAATTTTGAGTTTTGGGTTGCCGCAACTGCT
GAAATACAGAGTTAACAACACATCTCAAGTGTTCTTGCTTTCCTTCCTGT
AATAGCTTCGTTGCCCGTTTTACTGTGTTTGTTGTTTCCCTTGCAAACGT
TGAGATTTGTTTCTTGTAGCTTCAGAATAATTCTTGAATGTTTATCTTTC
CTCATGGTGTCCTCCCGATTAAAAAAAAAAAAAAAAAA
back to top