FC925249

Overview
NameFC925249
Unique NameFC925249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: KSL5_ORYSI (Ent-isokaur-15-ene synthase OS=Oryza sativa subsp. indica GN=KSL5 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.043e-14
Identity = 59/237 (24.89%), Postives = 112/237 (47.26%), Query Frame = 2
Query:   20 EKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTP-KLEEYLENGLVSI-TGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETG---ASEEVAREHIKDMMRQM 715
            ++L FAR     ++  +    F  + +  R   T +  L T +DD +D  G+ +E+E     + +WD +  +      +++ F A+YN   + A   +  Q  +++  I  +W   ++  L EA+W   KY P  +EEY+   + S   GP+I + +   G  P + +E+   E    +++ ++ I RL +D+ T   EI+ G V   +   +  +G    S E + E  K  MR++
Sbjct:  513 DELKFARLMPSITYFSAAATMFPSELSEARIAWTQNCILTTTVDDFFDGDGSKEEMENLVKLIKKWDGHGEIGFSSECVEILFYAIYNTSKQIAEKAVPLQKRNVVDHIAESWWFTVRGMLTEAEWRMDKYVPTTVEEYMSAAVDSFAVGPIITSAALFVG--PELSEEVFRSEEYIHLMNLANTIGRLLNDMQTYEKEIKMGKVNSIMLHALSHSGGGRGSPEASMEEAKREMRRV 747          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: LIS_CLABR (S-linalool synthase OS=Clarkia breweri GN=LIS PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.503e-13
Identity = 62/204 (30.39%), Postives = 101/204 (49.51%), Query Frame = 2
Query:  107 RRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYT-PKLEEYLENGLVSITG-PLIITISYLSGTN-PIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETG-ASEEVAREHIKDMM 706
            R VLT +  +ITV DD +DV G++ +LE  TDAV RWD     + L  + K  F AL + VNE      +Q   D+  +++  W     ++L+EAKW     + P ++ YL N + SI    +++T S L G   P+   +L     + DI      + RL +D+ +   E   G +   +  YM E   AS + +  H++ ++
Sbjct:  533 RLVLTKAAVVITVADDFFDVEGSMVDLEKLTDAVRRWD----AEGLGSHSKTIFEALDDLVNEVRLKCFQQNGQDIKNNLQQLWYETFHSWLMEAKWGKGLTSKPSVDVYLGNAMTSIAAHTMVLTASCLLGPGFPV--HQLWSQRRHQDITSLLMVLTRLLNDIQSYLKEEDEGKI-NYVWMYMIENNQASIDDSVRHVQTII 729          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: KSL5_ORYSJ (Ent-pimara-8(14),15-diene synthase OS=Oryza sativa subsp. japonica GN=KSL5 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 58/237 (24.47%), Postives = 111/237 (46.84%), Query Frame = 2
Query:   20 EKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTP-KLEEYLENGLVSIT-GPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETG---ASEEVAREHIKDMMRQM 715
            ++L FAR     ++  +    F  + +  R   T +  L T +DD +D  G+ +E+E     + +WD +  +      +++ F A+YN   + A   +  Q  +++  I  +W   ++  L EA+W   KY P  +EEY+   + S   GP I + +   G  P + +E+   +    +++ ++ I RL +D+ T   EI+ G V   +   +  +G    S E + E  K  MR++
Sbjct:  513 DELKFARLMPSITYFSAAATMFPSELSEARIAWTQNCILTTTVDDFFDGDGSKEEMENLVKLIEKWDGHGEIGFSSECVEILFYAIYNTSKQIAEKAVPLQKRNVVDHIAESWWFTVRGMLTEAEWRMDKYVPTTVEEYMSAAVDSFALGPTITSAALFVG--PELSEEVFRSKEYIHLMNLANTIGRLLNDMQTYEKEIKMGKVNSVMLHALSHSGGGRGSPEASMEEAKREMRRV 747          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: KSB_CUCMA (Ent-kaur-16-ene synthase, chloroplastic OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.576e-13
Identity = 59/229 (25.76%), Postives = 109/229 (47.60%), Query Frame = 2
Query:   20 EKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSIT-GPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETG--ASEEVAREHIK 697
            ++L F R  L   +  +     +P+    R     +  L TV+DD YD  G+ +EL+   + V +WD +  + +    +++ FLAL++ V E     L  Q   ++ ++   WL L++    EA+W  +K  P + EY+E   VS   GP+I+ + +  G  P + +E+        +    S   RL++D+ +   E + G +   +  +M + G   ++E A E IK
Sbjct:  493 DELKFFRLHLGYCYFAAAATLTDPELHDARIAWAQNGVLTTVVDDFYDGGGSEEELDNLIELVEKWDPDGEVGYCSKDVEIVFLALHSTVCEIGRRALVWQGRSVMRNVIDGWLALLKVMRKEAEWSTNKVVPSMGEYMEQAHVSFALGPIILPMLFFVG--PKLSEEMIGSCEYQKLYKLMSTAGRLKNDIRSYDRECKEGKL-NILSLWMIDGGGNVTKEEAIEAIK 718          
BLAST of FC925249 vs. ExPASy Swiss-Prot
Match: KSL6_ORYSJ (Ent-isokaur-15-ene synthase OS=Oryza sativa subsp. japonica GN=KSL6 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.511e-13
Identity = 61/237 (25.74%), Postives = 110/237 (46.41%), Query Frame = 2
Query:   20 EKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVARWDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDMLLSIKHAWLGLIQAYLVEAKWYHSKYTP-KLEEYLENGLVSI-TGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETG---ASEEVAREHIKDMMRQM 715
            ++L FAR  L+ S  +    A        R   T +  L T +DD +D  G+ +E+E     + +WD +  +      +++ F A+YN   + A   +  Q  + +  I  +W   ++  L EA+W   KY P  +EEY+   + S   GP+I + +   G  P + +E+   E    +++ ++ I RL +D+ T   EI+ G V   +   +  +G    S E + E  K  MR++
Sbjct:  515 DELKFAR--LMPSITYFSAAAVLLPSESARIAWTQNCILTTTVDDFFDGEGSKEEMENLVKLIEKWDDHGEIGFSSECVEILFYAVYNTSKQIAEKAMPLQKRNAVDHIAESWWFTVRGMLTEAEWRMDKYVPTTVEEYMSAAVDSFAVGPIITSAALFVG--PELSEEVFRSEEYIHLMNLANTIGRLLNDMQTYEKEIKMGKVNSVMLHALSHSGGGRGSPEASMEEAKREMRRV 747          
The following BLAST results are available for this feature:
BLAST of FC925249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
KSL5_ORYSI5.043e-1424.89Ent-isokaur-15-ene synthase OS=Oryza sativa subsp.... [more]
LIS_CLABR2.503e-1330.39S-linalool synthase OS=Clarkia breweri GN=LIS PE=2... [more]
KSL5_ORYSJ3.269e-1324.47Ent-pimara-8(14),15-diene synthase OS=Oryza sativa... [more]
KSB_CUCMA5.576e-1325.76Ent-kaur-16-ene synthase, chloroplastic OS=Cucurbi... [more]
KSL6_ORYSJ9.511e-1325.74Ent-isokaur-15-ene synthase OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YG05FM1 TF Citrus clementina cDNA clone KN0AAP8YG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925249 ID=FC925249; Name=FC925249; organism=Citrus clementina; type=EST; length=724bp
GAAGGATACAGGTCTTGGAGAGAAATTGAGCTTTGCGAGGAACAGGTTGG
TAGCGTCCTTCTTATGGAGCATGGGGATCGCGTTTGAGCCTCAATTCGCC
TACTGCAGGAGAGTGCTCACAATCTCGATAGCCCTAATTACAGTGATTGA
TGACATTTATGATGTCTATGGAACATTGGATGAACTTGAGATATTCACTG
ATGCTGTTGCGAGGTGGGACATCAATTATGCTTTGAAGCACCTTCCGGGC
TATATGAAAATGTGTTTTCTTGCCCTTTACAACTTTGTTAATGAATTTGC
TTATTACGTTCTCAAACAACAGGATTTTGATATGCTTCTGAGCATAAAAC
ATGCATGGCTTGGCTTAATACAAGCCTACTTGGTGGAGGCGAAATGGTAC
CATAGCAAGTACACACCGAAACTGGAAGAATACTTGGAAAATGGATTGGT
ATCAATAACGGGCCCTTTAATTATAACGATTTCATATCTTTCTGGTACAA
ATCCAATCATTAAGAAGGAACTGGAATTTCTAGAAAGTAATCCAGATATA
GTTCACTGGTCATCCAAGATTTTCCGTCTGCAAGATGATTTGGGAACTTC
ATCGGACGAGATACAGAGAGGGGATGTTCCGAAATCAATCCAGTGTTACA
TGCATGAAACTGGTGCCTCGGAGGAAGTTGCTCGTGAACACATCAAGGAT
ATGATGAGACAGATGTGGAAGAAG
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