FC925262

Overview
NameFC925262
Unique NameFC925262
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: NH2L1_XENLA (NHP2-like protein 1 OS=Xenopus laevis GN=nhp2l1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.909e-15
Identity = 38/100 (38.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:   87 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTK 386
            P A PLA  +L+K  L LV+++A +K L++G  E  K++ RG     V+A +  P+++I H+P+LCE+ ++PY++V SK+ L  A    RP     V  K
Sbjct:    8 PKAYPLADAQLTKTLLDLVQQSANYKQLRKGANEATKTLNRGIAEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIK 107          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: NH2L1_RAT (NHP2-like protein 1 OS=Rattus norvegicus GN=Nhp2l1 PE=2 SV=4)

HSP 1 Score: 81.2629 bits (199), Expect = 3.257e-15
Identity = 37/100 (37.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:   87 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTK 386
            P A PLA   L+K+ L LV+++  +K L++G  E  K++ RG     V+A +  P+++I H+P+LCE+ ++PY++V SK+ L  A    RP     V  K
Sbjct:    8 PKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIK 107          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: NH2L1_MOUSE (NHP2-like protein 1 OS=Mus musculus GN=Nhp2l1 PE=2 SV=4)

HSP 1 Score: 81.2629 bits (199), Expect = 3.257e-15
Identity = 37/100 (37.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:   87 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTK 386
            P A PLA   L+K+ L LV+++  +K L++G  E  K++ RG     V+A +  P+++I H+P+LCE+ ++PY++V SK+ L  A    RP     V  K
Sbjct:    8 PKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIK 107          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: NH2L1_MACFA (NHP2-like protein 1 OS=Macaca fascicularis GN=NHP2L1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.257e-15
Identity = 37/100 (37.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:   87 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTK 386
            P A PLA   L+K+ L LV+++  +K L++G  E  K++ RG     V+A +  P+++I H+P+LCE+ ++PY++V SK+ L  A    RP     V  K
Sbjct:    8 PKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIK 107          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: NH2L1_HUMAN (NHP2-like protein 1 OS=Homo sapiens GN=NHP2L1 PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 3.257e-15
Identity = 37/100 (37.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:   87 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTK 386
            P A PLA   L+K+ L LV+++  +K L++G  E  K++ RG     V+A +  P+++I H+P+LCE+ ++PY++V SK+ L  A    RP     V  K
Sbjct:    8 PKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIK 107          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: NH2L1_BOVIN (NHP2-like protein 1 OS=Bos taurus GN=NHP2L1 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 3.257e-15
Identity = 37/100 (37.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:   87 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTK 386
            P A PLA   L+K+ L LV+++  +K L++G  E  K++ RG     V+A +  P+++I H+P+LCE+ ++PY++V SK+ L  A    RP     V  K
Sbjct:    8 PKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIK 107          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: SNU13_CANGA (13 kDa ribonucleoprotein-associated protein OS=Candida glabrata GN=SNU13 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.555e-15
Identity = 40/121 (33.06%), Postives = 67/121 (55.37%), Query Frame = 3
Query:   87 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 449
            P A PLA +KLS++ L +V++AA  + LK+G  E  K++ RG     ++A +  PI+++ H+P+LCE+ ++PY++V S+  L  A    RP     + T        Q    K K +  L+
Sbjct:    6 PKAFPLADEKLSQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKNQIYAVKDKIETLLI 126          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: SNU13_CRYNE (13 kDa ribonucleoprotein-associated protein OS=Cryptococcus neoformans GN=SNU13 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.475e-15
Identity = 40/128 (31.25%), Postives = 69/128 (53.91%), Query Frame = 3
Query:   87 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVAEDVKEL 470
            P A PLA  +L+ + L L+++A  +K LK+G  E  K++ RG     V+  ++ PI+++ H+P+LCE+ ++PY+++ SK  L  A    RP     V T          E  +L A    V  ++++L
Sbjct:    7 PKAFPLANAQLTNQILDLIQQAQHYKQLKKGANEATKTLNRGICEFIVMTADVEPIEIVLHLPLLCEDKNVPYVFLPSKTALGRACGVSRPVIAASVTT---------NEARELNAQIQAVKNEIEKL 125          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: SNU13_KLULA (13 kDa ribonucleoprotein-associated protein OS=Kluyveromyces lactis GN=SNU13 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.142e-14
Identity = 38/121 (31.40%), Postives = 65/121 (53.72%), Query Frame = 3
Query:   87 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 449
            P A PLA   LS++ L +V++A+  + LK+G  E  K++ RG     ++A +  PI+++ H+P+LCE+ ++PY++V S+  L  A    RP     + T        Q    K K +  L+
Sbjct:    6 PKAFPLADATLSQQILDVVQQASNMRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRTALGRACGVSRPVIAASITTNDASAIKSQIYAVKDKIETLLI 126          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: NH2L1_DICDI (NHP2-like protein 1 homolog OS=Dictyostelium discoideum GN=DDB_G0282243 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.142e-14
Identity = 41/128 (32.03%), Postives = 70/128 (54.69%), Query Frame = 3
Query:   93 AKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRP--TCCVLVLTKPTKGELGQEEQDKLKADYTLVAEDVKEL 470
            AKPLA  KL+   L L++++     LK+G  E  K++ R      V+A +  P++++ H+P+LCE+ +IPY++V+SK +L  A    RP   C V V           +++ +LK+  T V + +  L
Sbjct:   10 AKPLADSKLTLTILDLIQQSNNLGQLKKGANECTKAVSRSTAEFVVLAADAEPLEILLHIPLLCEDKNIPYVFVSSKSELGRACDVSRPVVACAVTV-----------DDKSQLKSQITNVKDSLDRL 126          
The following BLAST results are available for this feature:
BLAST of FC925262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
NH2L1_XENLA1.909e-1538.00NHP2-like protein 1 OS=Xenopus laevis GN=nhp2l1 PE... [more]
NH2L1_RAT3.257e-1537.00NHP2-like protein 1 OS=Rattus norvegicus GN=Nhp2l1... [more]
NH2L1_MOUSE3.257e-1537.00NHP2-like protein 1 OS=Mus musculus GN=Nhp2l1 PE=2... [more]
NH2L1_MACFA3.257e-1537.00NHP2-like protein 1 OS=Macaca fascicularis GN=NHP2... [more]
NH2L1_HUMAN3.257e-1537.00NHP2-like protein 1 OS=Homo sapiens GN=NHP2L1 PE=1... [more]
NH2L1_BOVIN3.257e-1537.00NHP2-like protein 1 OS=Bos taurus GN=NHP2L1 PE=2 S... [more]
SNU13_CANGA5.555e-1533.0613 kDa ribonucleoprotein-associated protein OS=Can... [more]
SNU13_CRYNE9.475e-1531.2513 kDa ribonucleoprotein-associated protein OS=Cry... [more]
SNU13_KLULA6.142e-1431.4013 kDa ribonucleoprotein-associated protein OS=Klu... [more]
NH2L1_DICDI6.142e-1432.03NHP2-like protein 1 homolog OS=Dictyostelium disco... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YB11FM1 TF Citrus clementina cDNA clone KN0AAP11YB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925262 ID=FC925262; Name=FC925262; organism=Citrus clementina; type=EST; length=535bp
AGAACCGAAAAAAGAAAACGGGAAGCGACAGCGAAGCACACTCAACCCCC
CATAAAGATGAGAAGAAGAAGATTGTTAGTCTTGCTCCCATTGCTAAACC
TCTAGCTGGCAAGAAGCTCTCCAAAAGAACCCTCAAGCTTGTCCGTCGAG
CTGCTGAACACAAATGCTTGAAGAGAGGAGTGAAGGAAGTGGTCAAAAGT
ATCCGCCGTGGTCATAAAGGATTATGTGTTATAGCTGGGAACATTAGTCC
AATTGATGTCATCACTCACGTTCCTATCTTATGTGAAGAGTCTGATATTC
CCTACATTTATGTTGCTTCAAAAGAGGATCTTGCAAATGCCGGTGCCACA
AAGAGGCCAACATGCTGTGTTTTGGTGCTAACTAAGCCAACTAAGGGAGA
ACTAGGACAAGAGGAACAAGATAAGTTGAAAGCTGATTATACCCTCGTTG
CAGAGGATGTGAAGGAACTGGCATCCTCTCTTTTCTGACGAACTACACTT
AAAGCCAACAAAGATGATTGTGCTTACAGATATGT
back to top