FC925262

Overview
NameFC925262
Unique NameFC925262
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC925262_ssr61 microsatellite FC925262_ssr61:61..72. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1403 contig Ccv1_Contig1403:49..583. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: SNU13_YEAST (13 kDa ribonucleoprotein-associated protein OS=Saccharomyces cerevisiae GN=SNU13 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.368e-13
Identity = 34/99 (34.34%), Postives = 59/99 (59.60%), Query Frame = 3
Query:   87 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLT 383
            P A PLA   L+++ L +V++AA  + LK+G  E  K++ RG     ++A +  PI+++ H+P+LCE+ ++PY++V S+  L  A    RP     + T
Sbjct:    6 PKAFPLADAALTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITT 104          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: SNU13_YARLI (13 kDa ribonucleoprotein-associated protein OS=Yarrowia lipolytica GN=SNU13 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.368e-13
Identity = 40/121 (33.06%), Postives = 65/121 (53.72%), Query Frame = 3
Query:   87 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 449
            P A PLA   L+++ L +V++A   + LK+G  E  K++ RG     ++A +  PI+++ H+P+LCE+ ++PYI+V SK  L  A    RP     V +        Q  Q K K +  L+
Sbjct:    6 PKAFPLADAALTQQILDIVQQATHLRQLKKGANEATKTLNRGISEFIIMAADAEPIEILLHLPLLCEDKNVPYIFVPSKVALGRACGVSRPVISASVTSNDASQLKDQIIQMKDKIERLLI 126          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: RL7A_NANEQ (50S ribosomal protein L7Ae OS=Nanoarchaeum equitans GN=rpl7ae PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.368e-13
Identity = 33/85 (38.82%), Postives = 54/85 (63.53%), Query Frame = 3
Query:   87 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANA 341
            P  K    ++L+ +  +LVR+A E   +++G  E  K++ RG   L +IA N++P +++ H+P LCEE  +PY+YV SKE+L  A
Sbjct:    6 PYVKFEVPEELANKVYELVRKARETGKIRKGTNETTKAVERGQAKLVIIAENVNPPEIVMHLPALCEEKGVPYVYVPSKEELGKA 90          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: SNU13_DEBHA (13 kDa ribonucleoprotein-associated protein OS=Debaryomyces hansenii GN=SNU13 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.787e-13
Identity = 38/121 (31.40%), Postives = 64/121 (52.89%), Query Frame = 3
Query:   87 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 449
            P A PLA   L+++ L +V+++   + LK+G  E  K++ RG     ++A +  PI+++ H+P+LCE+ ++PY++V SK  L  A    RP     V T        Q    K K +  L+
Sbjct:    6 PKAFPLADSALTQQILDVVQQSQNLRQLKKGANEATKTLNRGISEFIIMAADTEPIEILLHLPLLCEDKNVPYVFVPSKTALGRACGVSRPVIAASVTTNEASAMKNQIYGIKDKIETLLI 126          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: SNU13_ASHGO (13 kDa ribonucleoprotein-associated protein OS=Ashbya gossypii GN=SNU13 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.787e-13
Identity = 37/121 (30.58%), Postives = 65/121 (53.72%), Query Frame = 3
Query:   87 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLV 449
            P A PLA   L+++ L +V++A+  + LK+G  E  K++ RG     ++A +  PI+++ H+P+LCE+ ++PY++V S+  L  A    RP     + T        Q    K K +  L+
Sbjct:    7 PKAFPLADAALTQQILDVVQQASNMRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKSQIYAVKDKIETLLI 127          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: RL7A_THEON (50S ribosomal protein L7Ae OS=Thermococcus onnurineus (strain NA1) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.981e-13
Identity = 38/107 (35.51%), Postives = 66/107 (61.68%), Query Frame = 3
Query:  114 KLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKG-ELGQEEQDKLK 431
            +L+++ L+ V  A +   +++G  E  K++ RG   L +IA ++ P +++ H+P LCEE +IPYIYV SK++L  A   + P   V ++ +P KG EL +E   K++
Sbjct:   14 ELAEKALEAVELARDTGRIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVPAASVAII-EPGKGRELVEEIAMKVR 119          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: SNU13_CANAL (13 kDa ribonucleoprotein-associated protein OS=Candida albicans GN=SNU13 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.791e-13
Identity = 33/97 (34.02%), Postives = 57/97 (58.76%), Query Frame = 3
Query:   87 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 377
            P A PLA   L+++ L +V+++   + LK+G  E  K++ RG     ++A +  PI+++ H+P+LCE+ ++PY++V SK  L  A    RP     V
Sbjct:    6 PKAFPLADSALTQQILDVVQQSQNLRQLKKGANEATKTLNRGISEFIIMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACGVSRPVIAASV 102          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: RL7A_SULIY (50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.791e-13
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = 3
Query:   75 VSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 380
            +S A   K    + L+ + L+ VR+A E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LC+E  IPY+YV+SK+ L  A   +  T    +L
Sbjct:    1 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: RL7A_SULIN (50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.791e-13
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = 3
Query:   75 VSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 380
            +S A   K    + L+ + L+ VR+A E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LC+E  IPY+YV+SK+ L  A   +  T    +L
Sbjct:    1 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102          
BLAST of FC925262 vs. ExPASy Swiss-Prot
Match: RL7A_SULIM (50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.791e-13
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = 3
Query:   75 VSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 380
            +S A   K    + L+ + L+ VR+A E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LC+E  IPY+YV+SK+ L  A   +  T    +L
Sbjct:    1 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102          
The following BLAST results are available for this feature:
BLAST of FC925262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
SNU13_YEAST1.368e-1334.3413 kDa ribonucleoprotein-associated protein OS=Sac... [more]
SNU13_YARLI1.368e-1333.0613 kDa ribonucleoprotein-associated protein OS=Yar... [more]
RL7A_NANEQ1.368e-1338.8250S ribosomal protein L7Ae OS=Nanoarchaeum equitan... [more]
SNU13_DEBHA1.787e-1331.4013 kDa ribonucleoprotein-associated protein OS=Deb... [more]
SNU13_ASHGO1.787e-1330.5813 kDa ribonucleoprotein-associated protein OS=Ash... [more]
RL7A_THEON3.981e-1335.5150S ribosomal protein L7Ae OS=Thermococcus onnurin... [more]
SNU13_CANAL6.791e-1334.0213 kDa ribonucleoprotein-associated protein OS=Can... [more]
RL7A_SULIY6.791e-1335.2950S ribosomal protein L7Ae OS=Sulfolobus islandicu... [more]
RL7A_SULIN6.791e-1335.2950S ribosomal protein L7Ae OS=Sulfolobus islandicu... [more]
RL7A_SULIM6.791e-1335.2950S ribosomal protein L7Ae OS=Sulfolobus islandicu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YB11FM1 TF Citrus clementina cDNA clone KN0AAP11YB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925262 ID=FC925262; Name=FC925262; organism=Citrus clementina; type=EST; length=535bp
AGAACCGAAAAAAGAAAACGGGAAGCGACAGCGAAGCACACTCAACCCCC
CATAAAGATGAGAAGAAGAAGATTGTTAGTCTTGCTCCCATTGCTAAACC
TCTAGCTGGCAAGAAGCTCTCCAAAAGAACCCTCAAGCTTGTCCGTCGAG
CTGCTGAACACAAATGCTTGAAGAGAGGAGTGAAGGAAGTGGTCAAAAGT
ATCCGCCGTGGTCATAAAGGATTATGTGTTATAGCTGGGAACATTAGTCC
AATTGATGTCATCACTCACGTTCCTATCTTATGTGAAGAGTCTGATATTC
CCTACATTTATGTTGCTTCAAAAGAGGATCTTGCAAATGCCGGTGCCACA
AAGAGGCCAACATGCTGTGTTTTGGTGCTAACTAAGCCAACTAAGGGAGA
ACTAGGACAAGAGGAACAAGATAAGTTGAAAGCTGATTATACCCTCGTTG
CAGAGGATGTGAAGGAACTGGCATCCTCTCTTTTCTGACGAACTACACTT
AAAGCCAACAAAGATGATTGTGCTTACAGATATGT
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