FC925268

Overview
NameFC925268
Unique NameFC925268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length348
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX1_PEA (Phospholipid hydroperoxide glutathione peroxidase, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 4.423e-48
Identity = 86/115 (74.78%), Postives = 98/115 (85.22%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            T+SNYTELS LY+ +KN+GLE+LAFPCNQFG QEPG NE+I++FACT+FKAEFPIFDKVDVNG   AP+Y+ LKSS GG FGD +KWNF KFLVDK G VVERY PTTSP  IEK
Sbjct:  114 TSSNYTELSHLYENFKNKGLEVLAFPCNQFGMQEPGSNEEIKQFACTKFKAEFPIFDKVDVNGPFTAPVYQFLKSSSGGFFGDIVKWNFEKFLVDKNGKVVERYPPTTSPFQIEK 228          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX8_ARATH (Probable glutathione peroxidase 8 OS=Arabidopsis thaliana GN=GPX8 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.858e-46
Identity = 80/114 (70.18%), Postives = 101/114 (88.60%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIE 343
            TNSNYTEL++LY++YK++GLEILAFPCNQFG +EPG N+QI +F CTRFK+EFPIF+K++VNG+NA+PLYK LK  K G+FGD I+WNF+KFLVDK G  V+RY PTTSPL++E
Sbjct:   44 TNSNYTELNELYNRYKDKGLEILAFPCNQFGDEEPGTNDQITDFVCTRFKSEFPIFNKIEVNGENASPLYKFLKKGKWGIFGDDIQWNFAKFLVDKNGQAVQRYYPTTSPLTLE 157          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX1_ARATH (Phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic OS=Arabidopsis thaliana GN=GPX1 PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 1.858e-46
Identity = 84/115 (73.04%), Postives = 96/115 (83.48%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            T+SNY+ELS LY+KYK QG EILAFPCNQFG QEPG N +I++FACTRFKAEFPIFDKVDVNG + AP+Y+ LKS+ GG  G  IKWNF KFL+DK+G VVERY PTTSP  IEK
Sbjct:  114 TSSNYSELSHLYEKYKTQGFEILAFPCNQFGFQEPGSNSEIKQFACTRFKAEFPIFDKVDVNGPSTAPIYEFLKSNAGGFLGGLIKWNFEKFLIDKKGKVVERYPPTTSPFQIEK 228          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX3_ARATH (Probable glutathione peroxidase 3, mitochondrial OS=Arabidopsis thaliana GN=GPX3 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 5.978e-45
Identity = 81/115 (70.43%), Postives = 95/115 (82.61%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            T+ NY E++ LY KYK QG EILAFPCNQFG+QEPG N +I+E  C  FKAEFPIFDK++VNG N  PLY  LK  KGGLFGD+IKWNF+KFLVD++G+VV+RYAPTTSPL IEK
Sbjct:   83 THGNYKEMNILYAKYKTQGFEILAFPCNQFGSQEPGSNMEIKETVCNIFKAEFPIFDKIEVNGKNTCPLYNFLKEQKGGLFGDAIKWNFAKFLVDRQGNVVDRYAPTTSPLEIEK 197          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX2_ARATH (Probable glutathione peroxidase 2 OS=Arabidopsis thaliana GN=GPX2 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.020e-44
Identity = 82/115 (71.30%), Postives = 97/115 (84.35%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            T++NY EL+ LY+KYK QGLEILAFPCNQF  QEPG+NE+IQ+  CTRFKAEFPIFDKVDVNG N APLYK+LK+ KGGL  D+IKWNF+KFLV  +G V++RY+P TSPL  EK
Sbjct:   44 TDANYKELNVLYEKYKEQGLEILAFPCNQFLGQEPGNNEEIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLLIDAIKWNFTKFLVSPDGKVLQRYSPRTSPLQFEK 158          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX1_HELAN (Glutathione peroxidase 1 OS=Helianthus annuus GN=GPXHA-1 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 8.080e-42
Identity = 75/115 (65.22%), Postives = 95/115 (82.61%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            TN++Y EL+Q+Y KYK +G EILAFPCNQFG QEPG NE+I +F CT+FK+EFPIFDK+DVNG+NAAP+Y+ LK+   G+ G  I+WNFSKFLVDK G  V+ Y PTTSPL++E+
Sbjct:   44 TNNSYDELNQIYLKYKEKGFEILAFPCNQFGQQEPGTNEEIVDFVCTKFKSEFPIFDKIDVNGENAAPVYEFLKTGFYGILGGDIQWNFSKFLVDKNGQPVDCYYPTTSPLTVER 158          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX5_ARATH (Probable glutathione peroxidase 5 OS=Arabidopsis thaliana GN=GPX5 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.990e-40
Identity = 74/115 (64.35%), Postives = 91/115 (79.13%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            T SNYT+L++LY KYK+QG  +LAFPCNQF +QEPG +E+  +FACTRFKAE+P+F KV VNG NAAP+YK LKS K    G  IKWNF+KFLV K+G V++RY  T SPLSI+K
Sbjct:   49 TESNYTQLTELYRKYKDQGFVVLAFPCNQFLSQEPGTSEEAHQFACTRFKAEYPVFQKVRVNGQNAAPVYKFLKSKKPSFLGSRIKWNFTKFLVGKDGQVIDRYGTTVSPLSIQK 163          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX4_ARATH (Probable glutathione peroxidase 4 OS=Arabidopsis thaliana GN=GPX4 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.420e-38
Identity = 72/115 (62.61%), Postives = 89/115 (77.39%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            T +NYT+L++LY KYK+Q  EILAFPCNQF  QEPG +++  EFAC RFKAE+P+F KV VNG NAAP+YK LK+SK    G  IKWNF+KFLV K+G V++RY    +PLSIEK
Sbjct:   47 TETNYTQLTELYRKYKDQDFEILAFPCNQFLYQEPGTSQEAHEFACERFKAEYPVFQKVRVNGQNAAPIYKFLKASKPTFLGSRIKWNFTKFLVGKDGLVIDRYGTMVTPLSIEK 161          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX2_CAEEL (Probable glutathione peroxidase R05H10.5 OS=Caenorhabditis elegans GN=R05H10.5 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.632e-34
Identity = 65/115 (56.52%), Postives = 81/115 (70.43%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            TNSNY +  +L D YK  GLE+LAFPCNQFG QEP     I  F   +FK E  +F K+DVNGDN APLYK LK  KGG   D+IKWNF+KFLV ++G V++R++PTT P  ++K
Sbjct:   39 TNSNYNQFKELLDVYKKDGLEVLAFPCNQFGGQEPSCEIDIAAFVADKFKFEPTLFQKIDVNGDNTAPLYKFLKQEKGGFLVDAIKWNFTKFLVGRDGHVIKRFSPTTEPKDMKK 153          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX1_CAEEL (Probable glutathione peroxidase F26E4.12 OS=Caenorhabditis elegans GN=F26E4.12 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.099e-34
Identity = 63/115 (54.78%), Postives = 81/115 (70.43%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            TN NYT+L +L D YK  GLE+LAFPCNQF  QEP     IQ F   +FK E  +F K+DVNGD  +PL+K LK+ KGG   D+IKWNF+KFLV ++G +++R+ PTT P  +EK
Sbjct:   39 TNKNYTQLKELLDVYKKDGLEVLAFPCNQFAGQEPSCEIDIQAFVADKFKFEPTLFQKIDVNGDKQSPLFKFLKNEKGGFMFDAIKWNFTKFLVGRDGKIIKRFGPTTDPKDMEK 153          
The following BLAST results are available for this feature:
BLAST of FC925268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
GPX1_PEA4.423e-4874.78Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX8_ARATH1.858e-4670.18Probable glutathione peroxidase 8 OS=Arabidopsis t... [more]
GPX1_ARATH1.858e-4673.04Phospholipid hydroperoxide glutathione peroxidase ... [more]
GPX3_ARATH5.978e-4570.43Probable glutathione peroxidase 3, mitochondrial O... [more]
GPX2_ARATH1.020e-4471.30Probable glutathione peroxidase 2 OS=Arabidopsis t... [more]
GPX1_HELAN8.080e-4265.22Glutathione peroxidase 1 OS=Helianthus annuus GN=G... [more]
GPX5_ARATH1.990e-4064.35Probable glutathione peroxidase 5 OS=Arabidopsis t... [more]
GPX4_ARATH5.420e-3862.61Probable glutathione peroxidase 4 OS=Arabidopsis t... [more]
GPX2_CAEEL1.632e-3456.52Probable glutathione peroxidase R05H10.5 OS=Caenor... [more]
GPX1_CAEEL8.099e-3454.78Probable glutathione peroxidase F26E4.12 OS=Caenor... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YB13FM1 TF Citrus clementina cDNA clone KN0AAP11YB13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925268 ID=FC925268; Name=FC925268; organism=Citrus clementina; type=EST; length=348bp
GACCAATTCAAACTACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGA
ATCAAGGCTTGGAGATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAA
GAGCCAGGAGACAATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAA
GGCTGAGTTTCCCATATTTGATAAGGTTGATGTTAATGGTGATAATGCTG
CTCCTTTATACAAGCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGAC
AGCATCAAGTGGAACTTTTCCAAGTTCTTGGTGGATAAGGAGGGGGATGT
TGTTGAGCGTTATGCCCCCACCACTAGCCCTCTGAGCATTGAGAAGGA
back to top