FC925268

Overview
NameFC925268
Unique NameFC925268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length348
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig467 contig Ccv1_Contig467:124..471. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX2_HUMAN (Glutathione peroxidase 2 OS=Homo sapiens GN=GPX2 PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 4.324e-11
Identity = 42/138 (30.43%), Postives = 66/138 (47.83%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEGDVVERYAPTTSPLSIE 343
            T  ++T+L++L  ++  + L +L FPCNQFG QE   NE+I       R    ++  F +  K +VNG N  P++ +LK      + D                    + WNF KFL+  EG+   RY+ T   ++IE
Sbjct:   43 TTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIE 179          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX1_PANTR (Glutathione peroxidase 1 OS=Pan troglodytes GN=GPX1 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.324e-11
Identity = 43/138 (31.16%), Postives = 65/138 (47.10%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS-------------------IKWNFSKFLVDKEGDVVERYAPTTSPLSIE 343
            T  +YT++++L  +   +GL +L FPCNQFG QE   NE+I       R    F+  F +F+K +VNG  A  L+  L+ +      D+                   + WNF KFLV  +G  + RY+     + IE
Sbjct:   50 TVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHTLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIE 187          
The following BLAST results are available for this feature:
BLAST of FC925268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
GPX2_HUMAN4.324e-1130.43Glutathione peroxidase 2 OS=Homo sapiens GN=GPX2 P... [more]
GPX1_PANTR4.324e-1131.16Glutathione peroxidase 1 OS=Pan troglodytes GN=GPX... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YB13FM1 TF Citrus clementina cDNA clone KN0AAP11YB13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925268 ID=FC925268; Name=FC925268; organism=Citrus clementina; type=EST; length=348bp
GACCAATTCAAACTACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGA
ATCAAGGCTTGGAGATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAA
GAGCCAGGAGACAATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAA
GGCTGAGTTTCCCATATTTGATAAGGTTGATGTTAATGGTGATAATGCTG
CTCCTTTATACAAGCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGAC
AGCATCAAGTGGAACTTTTCCAAGTTCTTGGTGGATAAGGAGGGGGATGT
TGTTGAGCGTTATGCCCCCACCACTAGCCCTCTGAGCATTGAGAAGGA
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