FC925268

Overview
NameFC925268
Unique NameFC925268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length348
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig467 contig Ccv1_Contig467:124..471. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX7_BOVIN (Glutathione peroxidase 7 OS=Bos taurus GN=GPX7 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.888e-17
Identity = 43/109 (39.45%), Postives = 59/109 (54.13%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGDVVERYAPTTS 328
            T+ +Y  L QL          +LAFPCNQFG QEP  N++I+ FA   +   FP+F K+ V G  A P +K+L  +     G    WNF K+LV  +G V+  + PT S
Sbjct:   59 TDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTETS----GKEPTWNFWKYLVAPDGKVIGAWDPTVS 163          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX8A_XENLA (Probable glutathione peroxidase 8-A OS=Xenopus laevis GN=gpx8-A PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.617e-16
Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 2
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSI 340
            +NY  L +L+ ++      +LAFPCNQFG  EPG N++I   A   +   FP+F K+ + G  A P Y+ L  S         +WNF K+LVD +G VV+ + P  +  SI
Sbjct:   84 ANYRSLQELHREFGPSHFTVLAFPCNQFGESEPGTNQEIGALAKRNYGVTFPMFSKIKILGSEAEPAYRFLVDST----KKEPRWNFWKYLVDPQGQVVKYWRPDETAESI 190          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX8_BOVIN (Probable glutathione peroxidase 8 OS=Bos taurus GN=GPX8 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.697e-15
Identity = 40/106 (37.74%), Postives = 59/106 (55.66%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGDVVERYAP 319
            T+ NY  L +L+ ++      +LAFPCNQFG  EP  ++++  FA   F   FPIF K+ + G  A P ++ L  S         +WNF K+LV+ EG VV+ + P
Sbjct:   82 TDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVVSFARNNFGVTFPIFHKIKILGSEAEPAFRFLVDSS----KKEPRWNFWKYLVNPEGQVVKTWRP 183          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX8_HUMAN (Probable glutathione peroxidase 8 OS=Homo sapiens GN=GPX8 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.936e-15
Identity = 38/106 (35.85%), Postives = 59/106 (55.66%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGDVVERYAP 319
            T+ NY  L +L+ ++      +LAFPCNQFG  EP  +++++ FA   +   FPIF K+ + G    P ++ L  S         +WNF K+LV+ EG VV+ + P
Sbjct:   82 TDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSS----KKEPRWNFWKYLVNPEGQVVKFWKP 183          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX3_CAEEL (Glutathione peroxidase OS=Caenorhabditis elegans GN=C11E4.2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.447e-15
Identity = 47/126 (37.30%), Postives = 66/126 (52.38%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFK--------AEFPIFDKVDVNGDNAAPLYKHLKSS------KGGLFGD---------SIKWNFSKFLVDKEGDVVERYAPT 322
            YT+ + + +KY+ QGL ++AFPCNQF  QEP +N ++     T  +         E  I+ K+DVNGDN  PLY+ +K S      K G   +          I WNF KFL+D+ G    R+ PT
Sbjct:   79 YTDFNPMLEKYQAQGLTLVAFPCNQFYLQEPAENHELMN-GLTYVRPGNGWTPHQELHIYGKIDVNGDNHHPLYEFVKESCPQTVDKIGKTDELMYNPVRPSDITWNFEKFLIDRNGQPRFRFHPT 203          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX8_MOUSE (Probable glutathione peroxidase 8 OS=Mus musculus GN=Gpx8 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.100e-14
Identity = 37/106 (34.91%), Postives = 60/106 (56.60%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGDVVERYAP 319
            T+ +Y  L +L+ ++      +LAFPCNQFG  EP  +++++ FA   +   FPIF K+ + G  A P ++ +  S         +WNF K+LV+ EG VV+ + P
Sbjct:   82 TDKSYQTLRELHKEFGPYHFNVLAFPCNQFGESEPKSSKEVESFARQNYGVTFPIFHKIKILGPEAEPAFRFIVDSS----KKEPRWNFWKYLVNPEGQVVKFWRP 183          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX6_HUMAN (Glutathione peroxidase 6 OS=Homo sapiens GN=GPX6 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.436e-14
Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 2
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI---QEFAC--TRFKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGDS------------IKWNFSKFLVDKEG 295
            + Y EL+ L ++ KN G+ +LAFPCNQFG QEPG N +I    ++ C  + F   F +F+K DVNG+    ++  LK+S      L G S            I+WNF KFLV  +G
Sbjct:   77 AQYPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLKYVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPDG 192          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX8_DANRE (Probable glutathione peroxidase 8 OS=Danio rerio GN=gpx8 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.450e-14
Identity = 40/115 (34.78%), Postives = 60/115 (52.17%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            T  +Y  L +L+ +       +LAFPC+Q+G  E G + +I+ FA + +   FPIF+K+ + G  A P ++ L  S   +     +WNF KFLV  EG VV  + P      I K
Sbjct:   83 TEQSYRALQELHRELGTSHFNVLAFPCSQYGDTESGTSREIEAFAKSNYGVTFPIFNKIKIMGSEAEPAFRFLTDSVQKI----PRWNFWKFLVSPEGQVVRFWKPEEPVSDIRK 193          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX1_RAT (Glutathione peroxidase 1 OS=Rattus norvegicus GN=Gpx1 PE=1 SV=4)

HSP 1 Score: 77.411 bits (189), Expect = 2.450e-14
Identity = 48/138 (34.78%), Postives = 67/138 (48.55%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEGDVVERYAPTTSPLSIE 343
            T  +YTE++ L  +   +GL +L FPCNQFG QE G NE+I       R    F+  F +F+K +VNG+ A PL+  L+++      D                    I WNF KFLV  +G  V RY+     + IE
Sbjct:   50 TTRDYTEMNDLQKRLGPRGLVVLGFPCNQFGHQENGKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGEKAHPLFTFLRNALPAPSDDPTALMTDPKYIIWSPVCRNDISWNFEKFLVGPDGVPVRRYSRRFRTIDIE 187          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX1_MOUSE (Glutathione peroxidase 1 OS=Mus musculus GN=Gpx1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.216e-13
Identity = 47/138 (34.06%), Postives = 68/138 (49.28%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSK-------------------GGLFGDSIKWNFSKFLVDKEGDVVERYAPTTSPLSIE 343
            T  +YTE++ L  +   +GL +L FPCNQFG QE G NE+I       R    F+  F +F+K +VNG+ A PL+  L+++                      +  + I WNF KFLV  +G  V RY+     + IE
Sbjct:   50 TIRDYTEMNDLQKRLGPRGLVVLGFPCNQFGHQENGKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGEKAHPLFTFLRNALPTPSDDPTALMTDPKYIIWSPVCRNDIAWNFEKFLVGPDGVPVRRYSRRFRTIDIE 187          
The following BLAST results are available for this feature:
BLAST of FC925268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
GPX7_BOVIN6.888e-1739.45Glutathione peroxidase 7 OS=Bos taurus GN=GPX7 PE=... [more]
GPX8A_XENLA2.617e-1637.84Probable glutathione peroxidase 8-A OS=Xenopus lae... [more]
GPX8_BOVIN1.697e-1537.74Probable glutathione peroxidase 8 OS=Bos taurus GN... [more]
GPX8_HUMAN4.936e-1535.85Probable glutathione peroxidase 8 OS=Homo sapiens ... [more]
GPX3_CAEEL6.447e-1537.30Glutathione peroxidase OS=Caenorhabditis elegans G... [more]
GPX8_MOUSE1.100e-1434.91Probable glutathione peroxidase 8 OS=Mus musculus ... [more]
GPX6_HUMAN1.436e-1439.66Glutathione peroxidase 6 OS=Homo sapiens GN=GPX6 P... [more]
GPX8_DANRE2.450e-1434.78Probable glutathione peroxidase 8 OS=Danio rerio G... [more]
GPX1_RAT2.450e-1434.78Glutathione peroxidase 1 OS=Rattus norvegicus GN=G... [more]
GPX1_MOUSE1.216e-1334.06Glutathione peroxidase 1 OS=Mus musculus GN=Gpx1 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YB13FM1 TF Citrus clementina cDNA clone KN0AAP11YB13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925268 ID=FC925268; Name=FC925268; organism=Citrus clementina; type=EST; length=348bp
GACCAATTCAAACTACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGA
ATCAAGGCTTGGAGATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAA
GAGCCAGGAGACAATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAA
GGCTGAGTTTCCCATATTTGATAAGGTTGATGTTAATGGTGATAATGCTG
CTCCTTTATACAAGCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGAC
AGCATCAAGTGGAACTTTTCCAAGTTCTTGGTGGATAAGGAGGGGGATGT
TGTTGAGCGTTATGCCCCCACCACTAGCCCTCTGAGCATTGAGAAGGA
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