FC925268

Overview
NameFC925268
Unique NameFC925268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length348
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig467 contig Ccv1_Contig467:124..471. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX1_HYLLA (Glutathione peroxidase 1 OS=Hylobates lar GN=GPX1 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.108e-12
Identity = 44/138 (31.88%), Postives = 66/138 (47.83%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS-------------------IKWNFSKFLVDKEGDVVERYAPTTSPLSIE 343
            T  +YT++++L  +   +GL +L FPCNQFG QE   NE+I       R    F+  F +F+K +VNG  A PL+  L+ +      D+                   + WNF KFLV  +G  + RY+     + IE
Sbjct:   50 TVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIE 187          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX1_HUMAN (Glutathione peroxidase 1 OS=Homo sapiens GN=GPX1 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 5.108e-12
Identity = 44/138 (31.88%), Postives = 66/138 (47.83%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS-------------------IKWNFSKFLVDKEGDVVERYAPTTSPLSIE 343
            T  +YT++++L  +   +GL +L FPCNQFG QE   NE+I       R    F+  F +F+K +VNG  A PL+  L+ +      D+                   + WNF KFLV  +G  + RY+     + IE
Sbjct:   50 TVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIE 187          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX_MCV1 (Glutathione peroxidase OS=Molluscum contagiosum virus subtype 1 GN=GPX1 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.672e-12
Identity = 43/138 (31.16%), Postives = 63/138 (45.65%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-----QEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEGDVVERYAPTTSPLSIE 343
            T   YT++++L  +   +GL +L FPCNQFG QE   N +I            F+  F +F+K +VNG  A PL+  L+ +      D                    + WNF KFLV  +G  V RY+     L++E
Sbjct:   67 TVREYTQMNELQRRLGARGLVVLGFPCNQFGHQENAQNAEILPSLKHVRPGNGFEPNFMLFEKCEVNGARAHPLFAFLREALPAPSDDMSTLVSDPQLIAWSPVCRNDVAWNFEKFLVGADGTPVRRYSHRCQTLAVE 204          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX1_PIG (Glutathione peroxidase 1 OS=Sus scrofa GN=GPX1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.713e-12
Identity = 45/140 (32.14%), Postives = 67/140 (47.86%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTR-------FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS-------------------IKWNFSKFLVDKEGDVVERYAPTTSPLSIE 343
            T  +YT++++L  +   +GL +L FPCNQFG QE   N +I    C +       F+  F +F+K +VNG NA PL+  L+ +      D+                   I WNF KFLV  +G  + RY+     + IE
Sbjct:   55 TVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNGEI--LNCLKYVRPGGGFEPNFMLFEKCEVNGANAHPLFAFLREALPTPSDDATALMTDPKFITWSPVCRNDIAWNFEKFLVGPDGVPLRRYSRRFLTIDIE 192          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPXC_DIRIM (Glutathione peroxidase OS=Dirofilaria immitis PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.486e-11
Identity = 44/125 (35.20%), Postives = 60/125 (48.00%), Query Frame = 2
Query:   14 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ-------IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKS---SKGGLFGD------------SIKWNFSKFLVDKEGDVVERYAPT 322
            Y + + + +   N  L+ILAFPCNQF  QEP +N +       ++            IF KV+VNGD+  PLYK LK        + GD             I WNF KFL+DK+G    R+ P+
Sbjct:   78 YNDFNPMLENNSNGTLKILAFPCNQFLLQEPAENHELLNGLKYVRPGNGWEPHGNMHIFGKVEVNGDDHHPLYKFLKEHCPQTVPIIGDRHQLMYNPIGTNDIIWNFEKFLIDKKGHPRYRFHPS 202          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX1_RABIT (Glutathione peroxidase 1 OS=Oryctolagus cuniculus GN=GPX1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.535e-11
Identity = 43/138 (31.16%), Postives = 65/138 (47.10%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEGDVVERYAPTTSPLSIE 343
            T  +YT++++L ++   + L +L FPCNQFG QE   NE+I       R    F+  F +F K +VNG  A+PL+  L+ +      D                    + W+F KFLV  +G  V RY+     + IE
Sbjct:   49 TVRDYTQMNELQERLGPRALVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFQKCEVNGAKASPLFAFLREALPPPSDDPTALMTDPKFITWCPVCRNDVSWSFEKFLVGPDGVPVRRYSRRFPTIDIE 186          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX5_CANFA (Epididymal secretory glutathione peroxidase OS=Canis familiaris GN=GPX5 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.311e-11
Identity = 47/133 (35.34%), Postives = 65/133 (48.87%), Query Frame = 2
Query:    8 SNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGD------------SIKWNFSKFLVDKEGDVVERYAPTTSPLSIEK 346
            + Y EL+ L ++ K  GL +L FPCNQFG Q PG+N +I       R    +   F +F+K DVNG+    ++  LK S      + G              I+WNF KFLV  +G  V R+   T P+S  K
Sbjct:   77 AQYPELNSLQEELKPLGLVVLGFPCNQFGKQGPGENSEILPGLKYVRPGRGYVPNFQLFEKGDVNGEKEQKVFTFLKLSCPHPSEVLGSFRHISWDPVKVHDIRWNFEKFLVGPDGVPVLRWFHRT-PISTVK 208          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX2_PONPY (Glutathione peroxidase 2 OS=Pongo pygmaeus GN=GPX2 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.324e-11
Identity = 41/138 (29.71%), Postives = 66/138 (47.83%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFAC-----TRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEGDVVERYAPTTSPLSIE 343
            T  ++T+L++L  ++  + L +L FPCNQFG QE   NE+I          + ++  F +  K +VNG N  P++ +LK      + D                    + WNF KFL+  EG+   RY+ T   ++IE
Sbjct:   43 TTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGSGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIE 179          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX2_MOUSE (Glutathione peroxidase 2 OS=Mus musculus GN=Gpx2 PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 4.324e-11
Identity = 42/138 (30.43%), Postives = 65/138 (47.10%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEGDVVERYAPTTSPLSIE 343
            T  +Y +L++L  ++  + L +L FPCNQFG QE   NE+I       R    ++  F +  K DVNG N  P++ +LK      + D                    + WNF KFL+  EG+   RY+ +   ++IE
Sbjct:   43 TTRDYNQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFSLTQKCDVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRSFQTINIE 179          
BLAST of FC925268 vs. ExPASy Swiss-Prot
Match: GPX2_HYLLA (Glutathione peroxidase 2 OS=Hylobates lar GN=GPX2 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.324e-11
Identity = 42/138 (30.43%), Postives = 66/138 (47.83%), Query Frame = 2
Query:    2 TNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEGDVVERYAPTTSPLSIE 343
            T  ++T+L++L  ++  + L +L FPCNQFG QE   NE+I       R    ++  F +  K +VNG N  P++ +LK      + D                    + WNF KFL+  EG+   RY+ T   ++IE
Sbjct:   43 TTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIE 179          
The following BLAST results are available for this feature:
BLAST of FC925268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
GPX1_HYLLA5.108e-1231.88Glutathione peroxidase 1 OS=Hylobates lar GN=GPX1 ... [more]
GPX1_HUMAN5.108e-1231.88Glutathione peroxidase 1 OS=Homo sapiens GN=GPX1 P... [more]
GPX_MCV16.672e-1231.16Glutathione peroxidase OS=Molluscum contagiosum vi... [more]
GPX1_PIG8.713e-1232.14Glutathione peroxidase 1 OS=Sus scrofa GN=GPX1 PE=... [more]
GPXC_DIRIM1.486e-1135.20Glutathione peroxidase OS=Dirofilaria immitis PE=2... [more]
GPX1_RABIT2.535e-1131.16Glutathione peroxidase 1 OS=Oryctolagus cuniculus ... [more]
GPX5_CANFA3.311e-1135.34Epididymal secretory glutathione peroxidase OS=Can... [more]
GPX2_PONPY4.324e-1129.71Glutathione peroxidase 2 OS=Pongo pygmaeus GN=GPX2... [more]
GPX2_MOUSE4.324e-1130.43Glutathione peroxidase 2 OS=Mus musculus GN=Gpx2 P... [more]
GPX2_HYLLA4.324e-1130.43Glutathione peroxidase 2 OS=Hylobates lar GN=GPX2 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YB13FM1 TF Citrus clementina cDNA clone KN0AAP11YB13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925268 ID=FC925268; Name=FC925268; organism=Citrus clementina; type=EST; length=348bp
GACCAATTCAAACTACACTGAGCTGAGTCAGTTGTACGACAAGTACAAGA
ATCAAGGCTTGGAGATTCTGGCCTTTCCTTGTAATCAGTTTGGAGCTCAA
GAGCCAGGAGACAATGAACAGATTCAAGAATTTGCATGCACTCGCTTTAA
GGCTGAGTTTCCCATATTTGATAAGGTTGATGTTAATGGTGATAATGCTG
CTCCTTTATACAAGCATCTGAAATCCAGCAAAGGTGGACTTTTTGGAGAC
AGCATCAAGTGGAACTTTTCCAAGTTCTTGGTGGATAAGGAGGGGGATGT
TGTTGAGCGTTATGCCCCCACCACTAGCCCTCTGAGCATTGAGAAGGA
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