FC925276

Overview
NameFC925276
Unique NameFC925276
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925276 vs. ExPASy Swiss-Prot
Match: PPIL3_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Homo sapiens GN=PPIL3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 40/143 (27.97%), Postives = 72/143 (50.35%), Query Frame = 3
Query:  276 LNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSK--DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDE-PYQP*SDV 695
            L+T  G I +E+F + +P+T + F+ LC   Y+ G  FH  IK +++Q G               K   +     KH    + ++ +   ++ G + +IT    P L+ K  VFG+V+ G + + E+E++  +E  Y+P +DV
Sbjct:    5 LHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDV 147          
BLAST of FC925276 vs. ExPASy Swiss-Prot
Match: PPIB_CHICK (Peptidyl-prolyl cis-trans isomerase B OS=Gallus gallus GN=PPIB PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 48/143 (33.57%), Postives = 75/143 (52.45%), Query Frame = 3
Query:  291 GYIIVELFKDGSPETVDKFIDLC--QKGY-FKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSP-KHEAFMIGTVK----SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEPYQP*SDV 695
            G +++ LF    P+TV+ F+ L   +KG+ FKG  FH VIK+++IQ G   D    D    +     +      K + +  G V      KD+ G + +ITT     L+ K +VFG+V++G DVV+++E   TD   +P  DV
Sbjct:   49 GRVVIGLFGKTVPKTVENFVALATGEKGFGFKGSKFHRVIKDFMIQGG---DFTRGDGTGGKSIYGDRFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDV 188          
BLAST of FC925276 vs. ExPASy Swiss-Prot
Match: CYP4_CAEEL (Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhabditis elegans GN=cyn-4 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 40/134 (29.85%), Postives = 68/134 (50.75%), Query Frame = 3
Query:  276 LNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSKDS--KGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDE 671
            L T+ G + +ELF    P+  + FI  C  GY+    FH +IKN+++Q G         E         +  +   H+A  + ++ +K S   G + +IT  P   L+ K  +FGR+V G+D +  IE+++T+E
Sbjct:  284 LVTNFGPLNLELFAPKVPKACENFITHCSNGYYNNTKFHRLIKNFMLQGGDPTGTGHGGESIWDKPFSDEFISGFSHDARGVLSMANKGSNTNGSQFFITFRPCKYLDRKHTIFGRLVGGQDTLTTIEKLETEE 417          
BLAST of FC925276 vs. ExPASy Swiss-Prot
Match: PPIL1_GIBZE (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Gibberella zeae GN=CYP1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11
Identity = 39/143 (27.27%), Postives = 70/143 (48.95%), Query Frame = 3
Query:  273 VLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKS--KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEPYQP*SDV 695
            VL T+ G +I+EL+   +P+T + F  L ++GY+    FH +I N+++Q G               K   ++    KH    I ++ +   ++ G + ++T AP P L+ K  +FGRV  G   ++ +  V T    +P  +V
Sbjct:    6 VLETTMGSLILELYTTHAPKTCNNFTTLVRRGYYDNTIFHRIIPNFMVQGGDPTGTGRGGSSIFGEKFEDEIDPGLKHTGAGILSMANAGPNTNGSQFFVTLAPTPWLDGKHTIFGRVKSGMGTIKRMGLVKTGSEDRPVEEV 148          
BLAST of FC925276 vs. ExPASy Swiss-Prot
Match: PPID_CANGA (Peptidyl-prolyl cis-trans isomerase D OS=Candida glabrata GN=CPR6 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11
Identity = 43/144 (29.86%), Postives = 74/144 (51.39%), Query Frame = 3
Query:  282 TSKGYIIVELFKDGSPETVDKFIDLCQKGY------------FKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEA-FMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDE 671
            T KG I+ EL+KD  P+T + F+ LC+               +KG  FH VIK+++IQ G   +       +  G+         KH+  F++    +  ++ G + +IT  P P L+ K +VFG V++G+ +V+ IE+  T++
Sbjct:   15 TPKGRIVFELYKDVVPKTAENFLKLCEGKSGMAKSKPDVPLSYKGSIFHRVIKDFMIQFGDFTNFDGTGGESIYGEKFEDENFEIKHDKPFLLSMANAGPNTNGSQAFITCVPTPHLDGKHVVFGEVIEGKRLVRLIEKQQTED 158          
BLAST of FC925276 vs. ExPASy Swiss-Prot
Match: PPID_USTMA (Peptidyl-prolyl cis-trans isomerase D OS=Ustilago maydis GN=CPR6 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 48/148 (32.43%), Postives = 72/148 (48.65%), Query Frame = 3
Query:  297 IIVELFKDGSPETVDKFIDLC----------QKGYFKGMSFHHVIKNYVIQAGHSKDLAAAD----EWTSRGKIRSQLRTSPKHEAFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEPYQP*SDV 695
            I++EL+ D  P T + F  LC          Q   F+   FH VI  ++IQ G   D   AD    E     K + +  T      F++    +  ++ G + +ITT P P L+ K +VFGRV+KG+ VV+ +E V+T    +P  DV
Sbjct:   34 IVLELYADRVPRTAENFRVLCTNTSKLASTGQPLSFRNSIFHRVIPKFMIQGG---DFTRADGTGGESIYGEKFQDEDLTGKHDVPFLLSMANAGANTNGSQFFITTVPTPHLDGKHVVFGRVLKGKGVVRRVESVETVASDRPKEDV 178          
BLAST of FC925276 vs. ExPASy Swiss-Prot
Match: PPID_MOUSE (40 kDa peptidyl-prolyl cis-trans isomerase OS=Mus musculus GN=Ppid PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 44/139 (31.65%), Postives = 69/139 (49.64%), Query Frame = 3
Query:  291 GYIIVELFKDGSPETVDKFIDLC--QKG---------YFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKH--EAFMIGTVKSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTD 668
            G I++ELF D  P+T + F  LC  +KG         +FKG  FH +IK ++IQ G   +       +  G+         KH  E  +       ++ G + +ITT P P L+ K +VFG+V+KG  V + +E V+ +
Sbjct:   30 GRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARTLENVEVN 168          
BLAST of FC925276 vs. ExPASy Swiss-Prot
Match: PPID_HUMAN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Homo sapiens GN=PPID PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 44/137 (32.12%), Postives = 69/137 (50.36%), Query Frame = 3
Query:  291 GYIIVELFKDGSPETVDKFIDLC--QKG---------YFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKH--EAFMIGTVKSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVD 662
            G I++ELF D  P+T + F  LC  +KG         +FKG  FH +IK ++IQ G   +       +  G+         KH  E  +      +++ G + +ITT P P L+ K +VFG+V+KG  V + +E V+
Sbjct:   30 GRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFITTVPTPHLDGKHVVFGQVIKGIGVARILENVE 166          
BLAST of FC925276 vs. ExPASy Swiss-Prot
Match: CYPE_DICDI (Peptidyl-prolyl cis-trans isomerase cypE OS=Dictyostelium discoideum GN=cypE PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 40/133 (30.08%), Postives = 68/133 (51.13%), Query Frame = 3
Query:  276 LNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSK--DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTD 668
            L T+ G I +EL+ + +P+    F +L ++GY+    FH +IK+++IQ G         E     K   ++    KH    I ++ +   +S G + +IT  P P L+ K  +FGRV  G  VVQ++  + T+
Sbjct:    8 LQTTVGDITLELYYNHAPKACKNFYELSKRGYYDNTIFHRLIKDFMIQGGDPLGNGRGGESIYGKKFEDEITKELKHTGAGILSMANSGVNSNGSQFFITFGPTPWLDGKHTIFGRVKSGMKVVQKMNAMQTN 140          
BLAST of FC925276 vs. ExPASy Swiss-Prot
Match: PPID_RAT (40 kDa peptidyl-prolyl cis-trans isomerase OS=Rattus norvegicus GN=Ppid PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 44/139 (31.65%), Postives = 69/139 (49.64%), Query Frame = 3
Query:  291 GYIIVELFKDGSPETVDKFIDLC--QKG---------YFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKH--EAFMIGTVKSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTD 668
            G I++ELF D  P+T + F  LC  +KG         +FKG  FH +IK ++IQ G   +       +  G+         KH  E  +       ++ G + +ITT P P L+ K +VFG+V+KG  V + +E V+ +
Sbjct:   30 GRIVLELFADIVPKTAENFRALCTGEKGTGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARMLENVEVN 168          
The following BLAST results are available for this feature:
BLAST of FC925276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
PPIL3_HUMAN2.186e-1127.97Peptidyl-prolyl cis-trans isomerase-like 3 OS=Homo... [more]
PPIB_CHICK2.186e-1133.57Peptidyl-prolyl cis-trans isomerase B OS=Gallus ga... [more]
CYP4_CAEEL2.186e-1129.85Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhab... [more]
PPIL1_GIBZE2.855e-1127.27Peptidyl-prolyl cis-trans isomerase-like 1 OS=Gibb... [more]
PPID_CANGA2.855e-1129.86Peptidyl-prolyl cis-trans isomerase D OS=Candida g... [more]
PPID_USTMA3.728e-1132.43Peptidyl-prolyl cis-trans isomerase D OS=Ustilago ... [more]
PPID_MOUSE3.728e-1131.6540 kDa peptidyl-prolyl cis-trans isomerase OS=Mus ... [more]
PPID_HUMAN3.728e-1132.1240 kDa peptidyl-prolyl cis-trans isomerase OS=Homo... [more]
CYPE_DICDI3.728e-1130.08Peptidyl-prolyl cis-trans isomerase cypE OS=Dictyo... [more]
PPID_RAT4.869e-1131.6540 kDa peptidyl-prolyl cis-trans isomerase OS=Ratt... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YB16FM1 TF Citrus clementina cDNA clone KN0AAP11YB16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925276 ID=FC925276; Name=FC925276; organism=Citrus clementina; type=EST; length=696bp
ATTTTCCCAAATAAAGTTTCCGCATCATGGCGAGGATGAAACCGCAGGCT
TTGTTAATTCCAAGCAAAAGGAAGAAGGGGCCTACACCAATCAGTGCCAA
GACCATCCTCATTTGCAATTTAATTGTCGTGTTGATAGTGTTGTGCTTAG
TTGTCACATATAGACATTGGTCGCATTCACAAAGGTCAAATGAACAAATA
GGGAATGAATCGTCAACCGTTGAGGATGATGCCTATGTGGTTTCAAAGAA
GTTTGATCTTCCTGGCCATGCTGTTTTAAATACATCTAAAGGTTATATAA
TAGTGGAACTCTTCAAAGATGGTTCACCTGAAACCGTGGATAAATTTATT
GACTTGTGTCAAAAGGGGTACTTCAAAGGTATGTCTTTCCATCATGTGAT
CAAAAACTATGTCATTCAAGCTGGGCATTCCAAGGATCTTGCAGCTGCTG
ATGAATGGACATCAAGAGGGAAGATCCGCAGTCAGCTGAGGACCAGTCCG
AAGCATGAGGCGTTTATGATTGGAACTGTAAAATCTAAAGACAGCAAAGG
ATTTGAGCTATACATTACAACTGCACCCATACCAGATTTAAATGATAAGC
TTATTGTGTTTGGACGAGTAGTGAAGGGTGAGGATGTGGTGCAGGAAATT
GAAGAGGTGGATACCGATGAGCCCTATCAGCCCTAGTCAGATGTAG
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