FC925278

Overview
NameFC925278
Unique NameFC925278
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925278 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.412e-47
Identity = 95/167 (56.89%), Postives = 121/167 (72.46%), Query Frame = 3
Query:  237 DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG------RVGGVVTNWALVSMNH 716
            D + FKF PI+ES VSR MT RY  D+  +A +D    GAGS+GLS AY ++KN P++++ IIE SV+PGGG+WL GQLFSAMV+RKPAH+FL EL I Y+++  YVV+KHAALF ST++SK+L  PNVKLFNA   EDL+ +         V GVVTNW LV+  H
Sbjct:   34 DWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAH 200          
BLAST of FC925278 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.264e-21
Identity = 54/149 (36.24%), Postives = 84/149 (56.38%), Query Frame = 3
Query:  264 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM 710
            ++E  ++R +   Y  D++   + D    GAG +G+  AY L+K    ++AI E+ +S GGG W  G  F+ +VV+  A   LDE GI Y+E +    +  A    +TI SK++ +  VK+FN +  EDL++K  RV G+V NW  V M
Sbjct:    2 LREVTITRAIVESYYRDLLNNLELDVAIVGAGPSGMVAAYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKVVVQDEAREILDEFGIRYEEFEKGYYVADAIEVATTIASKVV-KSGVKIFNMIEVEDLVIKDNRVSGIVINWTPVLM 148          
BLAST of FC925278 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.210e-20
Identity = 55/149 (36.91%), Postives = 83/149 (55.70%), Query Frame = 3
Query:  264 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM 710
            +K+ ++SR +   Y  D++   + D    GAG +G+   Y L+K    ++AI E+ +S GGG W  G  F+ +VV++ A   LDE  I Y+E +    +  A    +TI SK + +  VK+FN V  EDL+VK  RV G+V NW  V M
Sbjct:    2 LKDVVISRAIVESYFKDLLNNLELDVAIVGAGPSGMVAGYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKIVVQEEAKEILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFNMVEVEDLVVKDDRVSGIVINWTPVKM 148          
BLAST of FC925278 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.696e-20
Identity = 55/149 (36.91%), Postives = 83/149 (55.70%), Query Frame = 3
Query:  264 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM 710
            ++E  +SR +   Y  D++   + D    GAG +G+  AY L+K    ++AI E+ +S GGG W  G  F+ +VV++ A   LDE  I Y+E +    +  A    +TI SK + +  VK+FN +  EDL+VK  RV G+V NW  V M
Sbjct:    2 LREVTISRAIIESYYRDLLNNLELDVAIVGAGPSGMVAAYYLAKG-GAKVAIFEKKLSIGGGIWGGGMGFNKVVVQEEAREILDEFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFNMIEVEDLVVKDNRVSGIVINWTPVLM 148          
BLAST of FC925278 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.598e-20
Identity = 53/149 (35.57%), Postives = 82/149 (55.03%), Query Frame = 3
Query:  264 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM 710
            ++E  +SR +   Y  D++     D    GAG +G+   Y L+K    ++AI E+ +S GGG W     F+ +VV++ A   LDE G+DY +  + + +  +    ST+ SK + +   K+FN V  EDL+VK GRV G+V NW  V M
Sbjct:    1 MREIEISRAIVEAYFNDLLQNLQLDIAIVGAGPSGMVAGYYLAKG-GAKVAIFEKKLSVGGGIWGGAMGFNRVVVQESAREILDEFGVDYSQVGNGLYVLDSIELASTLASKAV-KAGAKIFNMVEVEDLVVKDGRVSGLVINWTPVMM 147          
BLAST of FC925278 vs. ExPASy Swiss-Prot
Match: THI4_THEMA (Putative thiazole biosynthetic enzyme OS=Thermotoga maritima GN=TM_0787 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.892e-19
Identity = 49/144 (34.03%), Postives = 86/144 (59.72%), Query Frame = 3
Query:  264 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNW 695
            +++ ++SR +  RY   +    + D    GAG +GL+ AYEL+KN   ++A+ E+  +PGGG W  G +F+ +V+ K    FL E+ I+Y+ ++ ++V+  +  F S ++ +   +    +FN V+ ED+ V+ GRV GVV NW
Sbjct:    3 MRDVLISRLIVERYFEKLRNSLELDVAIVGAGPSGLTAAYELAKN-GFRVAVFEERNTPGGGIWGGGMMFNEIVLEKELENFLKEVEIEYEVKEDHIVV-DSVHFASGLLYR-ATKAGAIVFNNVSVEDVAVQNGRVCGVVVNW 143          
BLAST of FC925278 vs. ExPASy Swiss-Prot
Match: THI4_METTH (Putative thiazole biosynthetic enzyme OS=Methanobacterium thermoautotrophicum GN=MTH_1620 PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.587e-18
Identity = 49/153 (32.03%), Postives = 85/153 (55.56%), Query Frame = 3
Query:  252 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM 710
            K D IK   +SR +   YM D++ Y + D    G G +GL+  Y L++   +++A+ E+ +S GGG W  G +F+ +VV+      LDE GI  +  D    +  +   TST+ S+   +  +K+FN ++ ED++++   + G+V NW+ V M
Sbjct:    2 KLDDIK---ISRAIVEGYMEDLLDYMEMDVAIGGGGPSGLTAGYYLAR-AGLKVALFERKLSIGGGMWGGGMMFNKIVVQDEGREILDEFGIRSEPYDEGYHVADSVEATSTLCSR-ACQAGLKIFNLMSIEDVMIRDEGITGLVLNWSSVEM 149          
BLAST of FC925278 vs. ExPASy Swiss-Prot
Match: THI4_METMJ (Putative thiazole biosynthetic enzyme OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=Memar_2251 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 48/151 (31.79%), Postives = 77/151 (50.99%), Query Frame = 3
Query:  264 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDE-QDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSM 710
            + E  +SR +       +I + + D    G G +GL+CA  L +   ++ A+IE+ +S GGG W  G +F  +VV++ A   LD  GI Y   ++ Y V K         ++       V+ FN    ED++++G GR+GG+V NW  V M
Sbjct:    3 LNEVTISRAILEEQHRALIDHLEMDAAVIGGGPSGLACAALLGEK-GVKCALIEKKLSIGGGMWGGGMMFPRIVVQEDARRLLDRFGIAYKAFEEGYYVAKSVEAVAK--LTAAACDAGVEFFNLTTVEDVMIRGDGRIGGLVVNWTPVDM 150          
BLAST of FC925278 vs. ExPASy Swiss-Prot
Match: THI4_METAC (Putative thiazole biosynthetic enzyme OS=Methanosarcina acetivorans GN=MA_2851 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 48/152 (31.58%), Postives = 80/152 (52.63%), Query Frame = 3
Query:  264 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYDEQDSYVVIKHAALFTSTIMSKLLA---RPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVS 707
            + E I++R +   Y    + Y D D    G G A L  A  L++   +++A+ EQ +S GGG W  G +F  +VV++ A   LD+ GI Y E +S   + ++       + KL+A       ++FN V+ ED++++   RV G+V NW  V+
Sbjct:    3 LDEVIITRAIFDEYSKTFLDYTDIDVALVGGGPANLVAAKYLAE-AGVKVALYEQKLSLGGGMWAGGMMFPRIVVQEEATRILDDFGIRYKEYESGYYVANSV----ESVGKLIAGATSAGAEVFNLVSFEDIMIRENDRVTGIVINWGPVT 149          
BLAST of FC925278 vs. ExPASy Swiss-Prot
Match: THI4_DESOH (Putative thiazole biosynthetic enzyme OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=Dole_2426 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 48/151 (31.79%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  264 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLSGQLFSAMVVRKPAHIFLDELGIDYD--EQDSYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM 710
            + E  +SR +  R+   +I   + D    G G +GL  A+ L++    ++A+ E+ +S GGG W    LF+ +VV+K A   LD + I Y    +D Y      A+ T T  +   A+  V +FN V  ED++++  R+ G+V NW+ V M
Sbjct:    3 LNEVTISRAIIDRFYEKLIANLEVDVAVVGGGPSGLVAAWRLARAGR-KVALFERKLSIGGGMWGGAMLFNEIVVQKSALHVLDAMEIGYRLYAEDYYTADAVEAISTLTSQA---AKAGVAIFNCVTVEDVMIRPDRIVGLVLNWSPVEM 149          
The following BLAST results are available for this feature:
BLAST of FC925278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
THI4_YEAST4.412e-4756.89Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_PYRHO9.264e-2136.24Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRFU1.210e-2036.91Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAB2.696e-2036.91Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRKO4.598e-2035.57Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_THEMA3.892e-1934.03Putative thiazole biosynthetic enzyme OS=Thermotog... [more]
THI4_METTH9.587e-1832.03Putative thiazole biosynthetic enzyme OS=Methanoba... [more]
THI4_METMJ3.410e-1531.79Putative thiazole biosynthetic enzyme OS=Methanocu... [more]
THI4_METAC4.924e-1431.58Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_DESOH6.431e-1431.79Putative thiazole biosynthetic enzyme OS=Desulfoco... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YG19FM1 TF Citrus clementina cDNA clone KN0AAP8YG19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925278 ID=FC925278; Name=FC925278; organism=Citrus clementina; type=EST; length=716bp
CAAATTACTTCTCATTATCAAACTTCTAAGCAGCAGGGGAAGGAGGGGTA
AAAAAAAAAAACATGGCAGCCATGGCTTCTACAGCTTTCGCTCCTTCAGT
TTCGTCTACCACCAATAAGCTCTTTGACTCATCCTTTCATGGGGCTCCCA
TGTCACCTTCTCTTCTACGTCTTCAACCCATCAAATCTTCTCGTCCCAAC
AACTTGTCCATTTCTGCTTCTGCTTCTCCTCCTTATGACTTGAACACTTT
CAAGTTTGACCCCATCAAAGAATCCATTGTTTCTCGTGAAATGACGCGCA
GGTACATGACGGACATGATCACTTATGCTGACACTGATGTGGTAGTGGTT
GGTGCTGGCTCTGCTGGCCTCTCTTGTGCTTATGAGCTCAGCAAAAACCC
CAACATTCAGATTGCTATTATCGAACAGTCTGTTAGCCCCGGCGGTGGCG
CGTGGCTCAGTGGACAGCTCTTCTCTGCCATGGTTGTGCGCAAACCAGCC
CACATCTTCCTTGACGAGCTTGGCATCGACTACGATGAGCAAGACAGCTA
TGTTGTGATCAAGCATGCAGCGCTGTTCACCTCCACTATAATGAGCAAGC
TCCTGGCCCGCCCCAACGTCAAGCTCTTTAATGCAGTGGCAGCCGAGGAC
TTGATAGTCAAAGGCGGCAGAGTTGGTGGTGTGGTGACCAACTGGGCGTT
GGTGTCAATGAATCAC
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