FC925292

Overview
NameFC925292
Unique NameFC925292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925292 vs. ExPASy Swiss-Prot
Match: H3_CHITH (Histone H3 OS=Chironomus thummi thummi PE=3 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.397e-58
Identity = 117/136 (86.03%), Postives = 119/136 (87.50%), Query Frame = 2 
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 454
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of FC925292 vs. ExPASy Swiss-Prot
Match: H32_XENTR (Histone H3.2 OS=Xenopus tropicalis GN=TGas081o10.1 PE=2 SV=3)

HSP 1 Score: 226.098 bits (575), Expect = 1.397e-58
Identity = 117/136 (86.03%), Postives = 119/136 (87.50%), Query Frame = 2 
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 454
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of FC925292 vs. ExPASy Swiss-Prot
Match: H32_XENLA (Histone H3.2 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.397e-58
Identity = 117/136 (86.03%), Postives = 119/136 (87.50%), Query Frame = 2 
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 454
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of FC925292 vs. ExPASy Swiss-Prot
Match: H32_PORAF (Histone H3.2 OS=Poroderma africanus PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.397e-58
Identity = 117/136 (86.03%), Postives = 119/136 (87.50%), Query Frame = 2 
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 454
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of FC925292 vs. ExPASy Swiss-Prot
Match: H32_ONCMY (Histone H3.2 OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.397e-58
Identity = 117/136 (86.03%), Postives = 119/136 (87.50%), Query Frame = 2 
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 454
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of FC925292 vs. ExPASy Swiss-Prot
Match: H32_MUSPA (Histone H3.2 OS=Mus pahari GN=H312 PE=2 SV=3)

HSP 1 Score: 226.098 bits (575), Expect = 1.397e-58
Identity = 117/136 (86.03%), Postives = 119/136 (87.50%), Query Frame = 2 
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 454
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of FC925292 vs. ExPASy Swiss-Prot
Match: H32_MOUSE (Histone H3.2 OS=Mus musculus GN=Hist1h3b PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.397e-58
Identity = 117/136 (86.03%), Postives = 119/136 (87.50%), Query Frame = 2 
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 454
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of FC925292 vs. ExPASy Swiss-Prot
Match: H32_ICTBU (Histone H3.2 OS=Ictiobus bubalus PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.397e-58
Identity = 117/136 (86.03%), Postives = 119/136 (87.50%), Query Frame = 2 
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 454
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of FC925292 vs. ExPASy Swiss-Prot
Match: H32_HUMAN (Histone H3.2 OS=Homo sapiens GN=HIST2H3A PE=1 SV=3)

HSP 1 Score: 226.098 bits (575), Expect = 1.397e-58
Identity = 117/136 (86.03%), Postives = 119/136 (87.50%), Query Frame = 2 
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 454
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of FC925292 vs. ExPASy Swiss-Prot
Match: H32_DANRE (Histone H3.2 OS=Danio rerio GN=zgc:113984 PE=2 SV=3)

HSP 1 Score: 226.098 bits (575), Expect = 1.397e-58
Identity = 117/136 (86.03%), Postives = 119/136 (87.50%), Query Frame = 2 
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 454
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of FC925292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3_CHITH1.397e-5886.03Histone H3 OS=Chironomus thummi thummi PE=3 SV=2[more]
H32_XENTR1.397e-5886.03Histone H3.2 OS=Xenopus tropicalis GN=TGas081o10.1... [more]
H32_XENLA1.397e-5886.03Histone H3.2 OS=Xenopus laevis PE=1 SV=2[more]
H32_PORAF1.397e-5886.03Histone H3.2 OS=Poroderma africanus PE=1 SV=2[more]
H32_ONCMY1.397e-5886.03Histone H3.2 OS=Oncorhynchus mykiss PE=1 SV=2[more]
H32_MUSPA1.397e-5886.03Histone H3.2 OS=Mus pahari GN=H312 PE=2 SV=3[more]
H32_MOUSE1.397e-5886.03Histone H3.2 OS=Mus musculus GN=Hist1h3b PE=1 SV=2[more]
H32_ICTBU1.397e-5886.03Histone H3.2 OS=Ictiobus bubalus PE=1 SV=2[more]
H32_HUMAN1.397e-5886.03Histone H3.2 OS=Homo sapiens GN=HIST2H3A PE=1 SV=3[more]
H32_DANRE1.397e-5886.03Histone H3.2 OS=Danio rerio GN=zgc:113984 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YF15FM1 TF Citrus clementina cDNA clone KN0AAP3YF15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925292 ID=FC925292; Name=FC925292; organism=Citrus clementina; type=EST; length=694bp
TTTTCCTGAGAATTAAACACGCTTTCCACTCATCCAATTTCAGAAAATGG
CTCGTACCAAGCAGACGGCAAGGAAGTCCACGGGAGGGAAGGCGCCACGT
AAGCAGCTGGCGACAAAGGCGGCTCGGAAGTCGGCGCCAGCGACGGGAGG
AGTGAAGAAGCCTCACCGTTTTAGGCCAGGAACCGTGGCTTTAAGAGAAA
TTAGGAAGTACCAGAAGAGCACTGAGCTTTTGATAAGGAAGCTTCCGTTC
CAGAGGCTCGTGAGAGAAATCGCTCAGGATTTTAAGACCGATCTGAGGTT
CCAGAGCAGCGCCGTTGCGGCTCTTCAAGAAGCTGCTGAGGCTTATCTTG
TGGGTCTCTTTGAAGATACCAATCTCTGCGCCATTCATGCTAAGAGGGTC
ACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCAGAGGAGAGAG
AGCTTAGTCGATTAATTGATTTGTATCTAGATCTGATTTGGCTTTTAGCG
TTTCAGTTTCTAAGAAATGGGTATGCAAGATTGTTTTGGAATGTAATGGA
AAGTTTGAATCTATTGTTACATTTGTTGGGTTTTTGTTTTTGCATTCCAT
GTGTTTGTTAAAAGTCTTATCTTTCAGTATAAATGAAGCAAAAAAAATAG
CGGATTCAAGTTTATTTGCAGTAATGAAAAAAAAAAAAAAAAAA
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