FC925292

Overview
NameFC925292
Unique NameFC925292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925292 vs. ExPASy Swiss-Prot
Match: H3L1_ARATH (Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g13370 PE=2 SV=3)

HSP 1 Score: 214.927 bits (546), Expect = 3.221e-55
Identity = 112/136 (82.35%), Postives = 114/136 (83.82%), Query Frame = 2
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 454
            MARTKQ+ARKS GGKAP KQLATKAARKSAP TGGVKKPHRFRPGTVALREIRKYQKSTELL RKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKD+QLARRIR ERA
Sbjct:    1 MARTKQSARKSHGGKAPTKQLATKAARKSAPTTGGVKKPHRFRPGTVALREIRKYQKSTELLNRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQLARRIRAERA 136          
BLAST of FC925292 vs. ExPASy Swiss-Prot
Match: H32_CICIN (Histone H3.2 OS=Cichorium intybus PE=2 SV=3)

HSP 1 Score: 214.927 bits (546), Expect = 3.221e-55
Identity = 113/136 (83.09%), Postives = 114/136 (83.82%), Query Frame = 2
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 454
            MARTKQTARKSTGGKAPRKQLATKA    A ATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKD+QLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAWNTLATATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQLARRIRGERA 136          
BLAST of FC925292 vs. ExPASy Swiss-Prot
Match: H31_SCHPO (Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=hht1 PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 4.207e-55
Identity = 109/136 (80.15%), Postives = 116/136 (85.29%), Query Frame = 2
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 454
            MARTKQTARKSTGGKAPRKQLA+KAARK+APATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                  LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136          
BLAST of FC925292 vs. ExPASy Swiss-Prot
Match: H3_MORAP (Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3)

HSP 1 Score: 214.157 bits (544), Expect = 5.494e-55
Identity = 111/135 (82.22%), Postives = 114/135 (84.44%), Query Frame = 2
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 451
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                  LFEDTNL AIHAKRVTI PKDI LARR+RGER
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEASEAYLVSLFEDTNLAAIHAKRVTIQPKDIHLARRLRGER 135          
BLAST of FC925292 vs. ExPASy Swiss-Prot
Match: H31_LODEL (Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=HHT1 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.176e-55
Identity = 109/136 (80.15%), Postives = 117/136 (86.03%), Query Frame = 2
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 454
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136          
BLAST of FC925292 vs. ExPASy Swiss-Prot
Match: H3_MASBA (Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.599e-54
Identity = 112/136 (82.35%), Postives = 115/136 (84.56%), Query Frame = 2
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 454
            MARTKQTARKSTGGKAPRK +ATKA RK+AP  GGVKKPHRFRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKAVATKA-RKTAPPVGGVKKPHRFRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135          
BLAST of FC925292 vs. ExPASy Swiss-Prot
Match: H31_CANAL (Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 1.599e-54
Identity = 108/136 (79.41%), Postives = 117/136 (86.03%), Query Frame = 2
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 454
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTI  KD+QLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVGLFEDTNLCAIHAKRVTIQKKDMQLARRLRGERS 136          
BLAST of FC925292 vs. ExPASy Swiss-Prot
Match: H33_SCHPO (Histone H3.3 OS=Schizosaccharomyces pombe GN=hht3 PE=1 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.561e-54
Identity = 108/136 (79.41%), Postives = 115/136 (84.56%), Query Frame = 2
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 454
            MARTKQTARKSTGGKAPRKQLA+KAARK+APATGGVKKPHR+RP TVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                  LFEDTNLCAIH KRVTI PKD+QLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPPTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTIQPKDMQLARRLRGERS 136          
BLAST of FC925292 vs. ExPASy Swiss-Prot
Match: H31_PICST (Histone H3.1/H3.2 OS=Pichia stipitis GN=HHT1 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.561e-54
Identity = 108/136 (79.41%), Postives = 116/136 (85.29%), Query Frame = 2
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 454
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRF                  LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136          
BLAST of FC925292 vs. ExPASy Swiss-Prot
Match: H31_PICGU (Histone H3.1/H3.2 OS=Pichia guilliermondii GN=HHT1 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.561e-54
Identity = 108/136 (79.41%), Postives = 116/136 (85.29%), Query Frame = 2
Query:   47 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 454
            MARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHR++PGTVALREIR++QKSTELLIRKLPFQRLVREIAQDFKTDLRF                  LFEDTNLCAIHAKRVTI  KDIQLARR+RGER+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLCAIHAKRVTIQKKDIQLARRLRGERS 136          
The following BLAST results are available for this feature:
BLAST of FC925292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3L1_ARATH3.221e-5582.35Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g1... [more]
H32_CICIN3.221e-5583.09Histone H3.2 OS=Cichorium intybus PE=2 SV=3[more]
H31_SCHPO4.207e-5580.15Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=... [more]
H3_MORAP5.494e-5582.22Histone H3 OS=Mortierella alpina GN=H3.1 PE=3 SV=3[more]
H31_LODEL7.176e-5580.15Histone H3.1/H3.2 OS=Lodderomyces elongisporus GN=... [more]
H3_MASBA1.599e-5482.35Histone H3 OS=Mastigamoeba balamuthi PE=2 SV=1[more]
H31_CANAL1.599e-5479.41Histone H3.1/H3.2 OS=Candida albicans GN=HHT1 PE=3... [more]
H33_SCHPO3.561e-5479.41Histone H3.3 OS=Schizosaccharomyces pombe GN=hht3 ... [more]
H31_PICST3.561e-5479.41Histone H3.1/H3.2 OS=Pichia stipitis GN=HHT1 PE=3 ... [more]
H31_PICGU3.561e-5479.41Histone H3.1/H3.2 OS=Pichia guilliermondii GN=HHT1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YF15FM1 TF Citrus clementina cDNA clone KN0AAP3YF15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925292 ID=FC925292; Name=FC925292; organism=Citrus clementina; type=EST; length=694bp
TTTTCCTGAGAATTAAACACGCTTTCCACTCATCCAATTTCAGAAAATGG
CTCGTACCAAGCAGACGGCAAGGAAGTCCACGGGAGGGAAGGCGCCACGT
AAGCAGCTGGCGACAAAGGCGGCTCGGAAGTCGGCGCCAGCGACGGGAGG
AGTGAAGAAGCCTCACCGTTTTAGGCCAGGAACCGTGGCTTTAAGAGAAA
TTAGGAAGTACCAGAAGAGCACTGAGCTTTTGATAAGGAAGCTTCCGTTC
CAGAGGCTCGTGAGAGAAATCGCTCAGGATTTTAAGACCGATCTGAGGTT
CCAGAGCAGCGCCGTTGCGGCTCTTCAAGAAGCTGCTGAGGCTTATCTTG
TGGGTCTCTTTGAAGATACCAATCTCTGCGCCATTCATGCTAAGAGGGTC
ACTATCATGCCCAAAGATATTCAGCTTGCTAGGAGGATCAGAGGAGAGAG
AGCTTAGTCGATTAATTGATTTGTATCTAGATCTGATTTGGCTTTTAGCG
TTTCAGTTTCTAAGAAATGGGTATGCAAGATTGTTTTGGAATGTAATGGA
AAGTTTGAATCTATTGTTACATTTGTTGGGTTTTTGTTTTTGCATTCCAT
GTGTTTGTTAAAAGTCTTATCTTTCAGTATAAATGAAGCAAAAAAAATAG
CGGATTCAAGTTTATTTGCAGTAATGAAAAAAAAAAAAAAAAAA
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