FC925293

Overview
NameFC925293
Unique NameFC925293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length748
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925293 vs. ExPASy Swiss-Prot
Match: SET_HUMAN (Protein SET OS=Homo sapiens GN=SET PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.103e-18
Identity = 52/161 (32.30%), Postives = 85/161 (52.80%), Query Frame = 1
Query:  220 RKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPK-GFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPG 699
            ++ +E + E+Q+E D L  +  EE   +E KY KL QP + KR E++                         +P+FW+T   N+  +S  + E DE AL +L  ++    +D K G++++FYFD NPYF+N VL+K +H+ +  +P    +  TEI+W  G
Sbjct:   42 QEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELI-----------------------AKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDP---SSKSTEIKWKSG 176          
BLAST of FC925293 vs. ExPASy Swiss-Prot
Match: SET_DROME (Protein SET OS=Drosophila melanogaster GN=Set PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.361e-14
Identity = 58/178 (32.58%), Postives = 83/178 (46.63%), Query Frame = 1
Query:  106 RASLDEGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPK-GFKLEFYFDPNPYFKNSVLTKTYHM 636
            RA LD GA AD            AG + +  E L        E +   Q+E D L  K  EE   +E KY KL +P Y KR E+V                       K +P+FW+T+  N+  +S  + E +E  L  L  ++    +D K G+++ F+FD NPYF+N VLTK +H+
Sbjct:    7 RAKLD-GAPAD------GNTSAAAGNNEEESEAL--------EQIDACQNEIDALNEKASEEILKVEQKYNKLRKPCYEKRSELV-----------------------KRIPNFWVTSFINHPQVSGILDEEEEECLHALNKLEVEEFEDIKSGYRINFHFDENPYFENKVLTKEFHL 146          
BLAST of FC925293 vs. ExPASy Swiss-Prot
Match: NP1L3_MOUSE (Nucleosome assembly protein 1-like 3 OS=Mus musculus GN=Nap1l3 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.194e-13
Identity = 43/106 (40.57%), Postives = 59/106 (55.66%), Query Frame = 1
Query:  415 KATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDI--KWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTY---HMIDEDEPI------LEKAIGTEIEWYPG 699
            K  + KG+PD+WLT +KN D L   I + DE  LKFL D+  K+     P G+  EF+F PNPYF+N +L KTY      D  +P       +E+  G +I+W  G
Sbjct:  342 KKEDPKGIPDYWLTVLKNVDKLGPMIQKCDEPILKFLSDVSLKFSNPGQPIGYTFEFHFLPNPYFRNELLMKTYIIRSKPDHYDPFFAWGWEIEECKGCKIDWRRG 447          
BLAST of FC925293 vs. ExPASy Swiss-Prot
Match: NP1L3_PONAB (Nucleosome assembly protein 1-like 3 OS=Pongo abelii GN=NAP1L3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.037e-13
Identity = 42/106 (39.62%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  415 KATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDI--KWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTY---HMIDEDEPI------LEKAIGTEIEWYPG 699
            K  + KG+PD+WL  +KN D L   I + DE  LKFL D+  K+ +   P  +  EF+F PNPYF+N VL KTY      D ++P       +E   G +I+W  G
Sbjct:  308 KREDPKGIPDYWLIVLKNVDKLGPMIQKYDEPILKFLSDVSLKFSKPGQPVSYTFEFHFLPNPYFRNEVLVKTYIIKSKPDHNDPFFSWGWEIEDCEGCKIDWRRG 413          
BLAST of FC925293 vs. ExPASy Swiss-Prot
Match: NP1L3_HUMAN (Nucleosome assembly protein 1-like 3 OS=Homo sapiens GN=NAP1L3 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.037e-13
Identity = 42/106 (39.62%), Postives = 59/106 (55.66%), Query Frame = 1
Query:  415 KATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDI--KWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHM---IDEDEPI------LEKAIGTEIEWYPG 699
            K  + KG+PD+WL  +KN D L   I + DE  LKFL D+  K+ +   P  +  EF+F PNPYF+N VL KTY +    D ++P       +E   G +I+W  G
Sbjct:  304 KREDPKGIPDYWLIVLKNVDKLGPMIQKYDEPILKFLSDVSLKFSKPGQPVSYTFEFHFLPNPYFRNEVLVKTYIIKAKPDHNDPFFSWGWEIEDCKGCKIDWRRG 409          
BLAST of FC925293 vs. ExPASy Swiss-Prot
Match: NP1L3_RAT (Nucleosome assembly protein 1-like 3 OS=Rattus norvegicus GN=Nap1l3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12
Identity = 41/106 (38.68%), Postives = 57/106 (53.77%), Query Frame = 1
Query:  415 KATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDI--KWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTY---HMIDEDEPI------LEKAIGTEIEWYPG 699
            K    +G+PD+WLT +KN D L   I + DE  LKFL D+  K+     P  +  EF+F PNPYF+N +L KTY      D  +P       +E+  G +I+W  G
Sbjct:  335 KEDPPRGIPDYWLTVLKNVDKLGPMIQKCDEPILKFLSDVSLKFSNPGQPISYTFEFHFLPNPYFRNELLMKTYIIRSKPDHYDPFFAWGWEIEECKGCKIDWRRG 440          
BLAST of FC925293 vs. ExPASy Swiss-Prot
Match: SPR2_CAEEL (Suppressor of presenilin-2 OS=Caenorhabditis elegans GN=spr-2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.247e-11
Identity = 49/173 (28.32%), Postives = 80/173 (46.24%), Query Frame = 1
Query:  175 AGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPK-GFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEW 690
            A +  ++  ++   V++++  L  IQ + D +     EE   +E  + +   P+Y KR ++   +                        +FW TA  N+ +LS  I E  E  L  L+D++    +D + GFK+   FDPN YF N V+TK+YH +  + P  E    TEIEW
Sbjct:   13 ADEFPNLRSEVAGPVKEKLIELDAIQHQLDVMSENAAEEVLKVEQIFNQKRLPIYEKRKKLTTKI-----------------------DNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNEVITKSYH-LQSESPSTEI---TEIEW 158          
The following BLAST results are available for this feature:
BLAST of FC925293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
SET_HUMAN2.103e-1832.30Protein SET OS=Homo sapiens GN=SET PE=1 SV=3[more]
SET_DROME5.361e-1432.58Protein SET OS=Drosophila melanogaster GN=Set PE=1... [more]
NP1L3_MOUSE1.194e-1340.57Nucleosome assembly protein 1-like 3 OS=Mus muscul... [more]
NP1L3_PONAB2.037e-1339.62Nucleosome assembly protein 1-like 3 OS=Pongo abel... [more]
NP1L3_HUMAN2.037e-1339.62Nucleosome assembly protein 1-like 3 OS=Homo sapie... [more]
NP1L3_RAT2.941e-1238.68Nucleosome assembly protein 1-like 3 OS=Rattus nor... [more]
SPR2_CAEEL4.247e-1128.32Suppressor of presenilin-2 OS=Caenorhabditis elega... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YF16FM1 TF Citrus clementina cDNA clone KN0AAP3YF16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925293 ID=FC925293; Name=FC925293; organism=Citrus clementina; type=EST; length=748bp
CCTAGGGTTTTAGCTCCCTATCCCCTCGCTCTCTCTAAAACGCCGTCGCT
TCTTCCTCCGCCGACAATGAGCGCCGACAAAGATAACTTCAACGTTACAG
ATCTCCGCGCCTCTCTTGATGAAGGGGCTCGAGCTGACCTCGTGGGTGTT
CTGAAGAATAAACTTCAGAACCTTGCTGGGCAGCACTCTGATGTTCTCGA
GAAACTGACTCCAGCAGTCAGGAAGCGTGTTGAGGTTCTCAGAGAGATCC
AGAGTGAACATGATGAATTGGAGGCAAAATTTTTTGAGGAGAGAGCAGCA
CTGGAAGCCAAATATCAAAAATTGTATCAGCCTATGTACACCAAGAGATA
TGAGATTGTCAATGGTGTTGTTGAAGGGGCCCCAAATGAAGTTGCAATGG
ACCAGGAAGAGGATAAAGCCACTGAAGAGAAAGGAGTGCCGGACTTCTGG
CTTACTGCAATGAAAAATAATGATGTCCTATCTGAGGAAATTACTGAGCG
TGATGAAGGAGCTCTCAAGTTTCTCAAAGACATTAAGTGGTTTAGGATTG
ATGATCCAAAGGGATTCAAGCTTGAATTCTACTTTGACCCCAATCCATAC
TTCAAGAACTCTGTCTTGACAAAGACCTATCACATGATTGATGAAGATGA
GCCTATTCTTGAGAAAGCTATAGGGACGGAGATTGAATGGTATCCAGGGA
AATGCTTGACACAGAAGCTCCTTAAGAAGAAGCCAAAGAAGGGATCAA
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