FC925294

Overview
NameFC925294
Unique NameFC925294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_MALGO (Elongation factor G, mitochondrial OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=MEF1 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.580e-62
Identity = 120/172 (69.77%), Postives = 135/172 (78.49%), Query Frame = 2
Query:  191 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--------------------------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 628
            E + R RN+GISAHIDSGKTTLTER+L+YTGRI +IHEVRGRD VGAKMDSM+LEREKGITIQSAAT C WK                          DY INIIDTPGHVDFT+EVERALRVLDGA+LVLC+V GVQSQ++TVDRQMRRY VPRL+FINK+DR GA+PW+V
Sbjct:   31 ERLLRQRNVGISAHIDSGKTTLTERVLYYTGRIKDIHEVRGRDEVGAKMDSMELEREKGITIQSAATYCNWKATPPTERSNMTGDAADESTVTTQKKHDYHINIIDTPGHVDFTIEVERALRVLDGAVLVLCAVSGVQSQTMTVDRQMRRYSVPRLSFINKMDRAGANPWRV 202          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_LACBS (Elongation factor G, mitochondrial OS=Laccaria bicolor (strain S238N-H82) GN=MEF1 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.580e-62
Identity = 117/150 (78.00%), Postives = 131/150 (87.33%), Query Frame = 2
Query:  209 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK----------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 628
            RNIG+SAHIDSGKTTLTERIL+YTGRI +IHEVRGRD VGAKMDSMDLEREKGITIQSAAT C W+          +Y INIIDTPGHVDFT+EVERALRVLDGAILVLC+V GVQSQ+ TVDRQMRRY VPR++FINK+DR GA+PW++
Sbjct:   35 RNIGVSAHIDSGKTTLTERILYYTGRISQIHEVRGRDAVGAKMDSMDLEREKGITIQSAATFCDWETTDVATGNKQNYAINIIDTPGHVDFTIEVERALRVLDGAILVLCAVAGVQSQTTTVDRQMRRYGVPRISFINKMDRPGANPWRI 184          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_EMENI (Elongation factor G, mitochondrial OS=Emericella nidulans GN=mef1 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.580e-62
Identity = 114/162 (70.37%), Postives = 137/162 (84.57%), Query Frame = 2
Query:  167 DDKEPWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW---------KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWK 625
            ++ +P   E + R+RNIGI+AHIDSGKTT TER+LFYTGRI  IHEVRGRD VGAKMDSMDLEREKGITIQSAAT C W         + Y +N+IDTPGH+DFT+EVERALRVLDGA+++LC+V GVQSQ+ITVDRQMRRY VPR++F+NK+DRMGA+P+K
Sbjct:   86 ENLDPVEAERLSRVRNIGIAAHIDSGKTTCTERVLFYTGRIKAIHEVRGRDSVGAKMDSMDLEREKGITIQSAATFCDWVKKDEDGKEQKYHMNLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTITVDRQMRRYNVPRISFVNKMDRMGANPFK 247          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_PICST (Elongation factor G, mitochondrial OS=Pichia stipitis GN=MEF1 PE=3 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 9.899e-62
Identity = 113/149 (75.84%), Postives = 131/149 (87.92%), Query Frame = 2
Query:  191 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD----YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWK 625
            ++ +R+RNIGISAHIDSGKTT TER+LFYTGRI  IHEVRGRD VGAKMD MDLEREKGITIQSAAT C+W      Y  N+IDTPGH+DFT+EVERALRVLDGA+LV+C+V GVQSQ++TVDRQMRRY VPR+ FINK+DRMGADP++
Sbjct:   77 DASKRMRNIGISAHIDSGKTTFTERVLFYTGRIKAIHEVRGRDAVGAKMDHMDLEREKGITIQSAATYCSWDKEDTAYHFNLIDTPGHIDFTIEVERALRVLDGAVLVVCAVSGVQSQTVTVDRQMRRYNVPRVTFINKMDRMGADPFR 225          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_NEUCR (Elongation factor G, mitochondrial OS=Neurospora crassa GN=mef-1 PE=3 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 1.293e-61
Identity = 112/151 (74.17%), Postives = 133/151 (88.08%), Query Frame = 2
Query:  197 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--------YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWK 625
            + R+RNIGI+AHIDSGKTT+TERILFYTGR+  IHEVRGRDGVGAKMDSM+LERE+GITIQSAAT   WK         Y IN+IDTPGH+DFT+EVERA+RVLDGA++VLC+V GVQSQ+ITVDRQM+RY VPR++F+NK+DRMGA+PWK
Sbjct:   98 LARVRNIGIAAHIDSGKTTVTERILFYTGRVKAIHEVRGRDGVGAKMDSMELERERGITIQSAATFADWKKKEKGVEETYHINLIDTPGHIDFTIEVERAMRVLDGAVMVLCAVSGVQSQTITVDRQMKRYNVPRISFVNKMDRMGANPWK 248          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_COPC7 (Elongation factor G, mitochondrial OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=MEF1 PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.293e-61
Identity = 116/150 (77.33%), Postives = 130/150 (86.67%), Query Frame = 2
Query:  209 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK----------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 628
            RNIGISAHIDSGKTTL+ERILFYTG+I EIHEVRGRD VGAKMD+MDLEREKGITIQSAAT C W+           Y IN+IDTPGHVDFT+EVERALRVLDGAILVLC+V GVQSQ+ TVDRQMRRY VPR++FINK+DR GA+PW++
Sbjct:  105 RNIGISAHIDSGKTTLSERILFYTGKIREIHEVRGRDAVGAKMDNMDLEREKGITIQSAATFCDWEATNPEDGSKQKYSINVIDTPGHVDFTIEVERALRVLDGAILVLCAVAGVQSQTTTVDRQMRRYNVPRISFINKMDRPGANPWRI 254          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_YEAS7 (Elongation factor G, mitochondrial OS=Saccharomyces cerevisiae (strain YJM789) GN=MEF1 PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.689e-61
Identity = 113/149 (75.84%), Postives = 131/149 (87.92%), Query Frame = 2
Query:  191 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW----KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWK 625
            E   +LRNIGISAHIDSGKTT TER+L+YT RI  IHEVRGRD VGAKMDSMDLEREKGITIQSAAT C+W    K+Y  N+IDTPGH+DFT+EVERALRVLDGA+LV+C+V GVQSQ++TVDRQMRRY VPR+ FINK+DRMG+DP++
Sbjct:   65 ERCNKLRNIGISAHIDSGKTTFTERVLYYTKRIKAIHEVRGRDNVGAKMDSMDLEREKGITIQSAATYCSWDKEGKNYHFNLIDTPGHIDFTIEVERALRVLDGAVLVVCAVSGVQSQTVTVDRQMRRYNVPRVTFINKMDRMGSDPFR 213          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_YEAS6 (Elongation factor G, mitochondrial OS=Saccharomyces cerevisiae (strain AWRI1631) GN=MEF1 PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.689e-61
Identity = 113/149 (75.84%), Postives = 131/149 (87.92%), Query Frame = 2
Query:  191 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW----KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWK 625
            E   +LRNIGISAHIDSGKTT TER+L+YT RI  IHEVRGRD VGAKMDSMDLEREKGITIQSAAT C+W    K+Y  N+IDTPGH+DFT+EVERALRVLDGA+LV+C+V GVQSQ++TVDRQMRRY VPR+ FINK+DRMG+DP++
Sbjct:   65 ERCNKLRNIGISAHIDSGKTTFTERVLYYTKRIKAIHEVRGRDNVGAKMDSMDLEREKGITIQSAATYCSWDKEGKNYHFNLIDTPGHIDFTIEVERALRVLDGAVLVVCAVSGVQSQTVTVDRQMRRYNVPRVTFINKMDRMGSDPFR 213          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_YEAS1 (Elongation factor G, mitochondrial OS=Saccharomyces cerevisiae (strain RM11-1a) GN=MEF1 PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.689e-61
Identity = 113/149 (75.84%), Postives = 131/149 (87.92%), Query Frame = 2
Query:  191 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW----KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWK 625
            E   +LRNIGISAHIDSGKTT TER+L+YT RI  IHEVRGRD VGAKMDSMDLEREKGITIQSAAT C+W    K+Y  N+IDTPGH+DFT+EVERALRVLDGA+LV+C+V GVQSQ++TVDRQMRRY VPR+ FINK+DRMG+DP++
Sbjct:   65 ERCNKLRNIGISAHIDSGKTTFTERVLYYTKRIKAIHEVRGRDNVGAKMDSMDLEREKGITIQSAATYCSWDKEGKNYHFNLIDTPGHIDFTIEVERALRVLDGAVLVVCAVSGVQSQTVTVDRQMRRYNVPRVTFINKMDRMGSDPFR 213          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_KLULA (Elongation factor G, mitochondrial OS=Kluyveromyces lactis GN=MEF1 PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.689e-61
Identity = 111/149 (74.50%), Postives = 133/149 (89.26%), Query Frame = 2
Query:  191 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW----KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWK 625
            ++ ++LRNIGISAHIDSGKTT TER+L+YTGRI  IHEVRGRD VGAKMDSMDLEREKGITIQSAAT C+W    + Y  N+IDTPGH+DFT+EVERALR+LDGA+LV+C+V GVQSQ++TVDRQMRRY VPR+ FINK+DRMGA+P++
Sbjct:   60 DASKKLRNIGISAHIDSGKTTFTERVLYYTGRIKAIHEVRGRDNVGAKMDSMDLEREKGITIQSAATYCSWDKDNESYHFNLIDTPGHIDFTIEVERALRILDGAVLVVCAVSGVQSQTVTVDRQMRRYNVPRVTFINKMDRMGANPFR 208          
The following BLAST results are available for this feature:
BLAST of FC925294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFGM_MALGO7.580e-6269.77Elongation factor G, mitochondrial OS=Malassezia g... [more]
EFGM_LACBS7.580e-6278.00Elongation factor G, mitochondrial OS=Laccaria bic... [more]
EFGM_EMENI7.580e-6270.37Elongation factor G, mitochondrial OS=Emericella n... [more]
EFGM_PICST9.899e-6275.84Elongation factor G, mitochondrial OS=Pichia stipi... [more]
EFGM_NEUCR1.293e-6174.17Elongation factor G, mitochondrial OS=Neurospora c... [more]
EFGM_COPC71.293e-6177.33Elongation factor G, mitochondrial OS=Coprinopsis ... [more]
EFGM_YEAS71.689e-6175.84Elongation factor G, mitochondrial OS=Saccharomyce... [more]
EFGM_YEAS61.689e-6175.84Elongation factor G, mitochondrial OS=Saccharomyce... [more]
EFGM_YEAS11.689e-6175.84Elongation factor G, mitochondrial OS=Saccharomyce... [more]
EFGM_KLULA1.689e-6174.50Elongation factor G, mitochondrial OS=Kluyveromyce... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YF17FM1 TF Citrus clementina cDNA clone KN0AAP3YF17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925294 ID=FC925294; Name=FC925294; organism=Citrus clementina; type=EST; length=679bp
ATTCCCACGATCTCCAGCACCACGTCTCCTCTACACTCTCTTCTCCTCTT
CGAGAACGACACCGACCAAATCCTCACCCCAATCTCCGTCTGCAGCCCTC
CTCCAAGGAAACTTCCACCTCCAATCGCGGCAGTTCTCGGCGGGAGGAAA
CCTCGCACGTGCGAAGGATGATAAGGAGCCATGGTGGAAGGAATCAATGG
AGCGGCTCCGAAATATCGGAATCTCGGCACATATCGATTCCGGAAAAACT
ACACTAACCGAGCGAATTCTGTTTTACACTGGACGGATTCACGAGATTCA
CGAGGTTCGAGGGCGAGACGGCGTCGGCGCCAAAATGGATTCTATGGATT
TGGAGCGTGAGAAAGGTATCACAATTCAGTCAGCCGCCACTAGCTGTGCT
TGGAAGGATTACCAGATTAATATAATTGACACTCCTGGACACGTAGACTT
CACAGTTGAAGTAGAAAGGGCTTTGCGAGTTCTTGATGGCGCAATTCTTG
TGCTTTGTAGTGTTGGTGGCGTGCAAAGTCAATCAATTACCGTTGACCGG
CAAATGAGGAGATACGAGGTGCCAAGACTGGCTTTCATTAACAAACTTGA
TAGAATGGGAGCTGATCCATGGAAAGTTTTTGGATCAGGCAAGGGCTAAG
CTGGCGCACCACCTGTGCTGCTGTGCAAG
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