FC925294

Overview
NameFC925294
Unique NameFC925294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_OENOB (Elongation factor G OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=fusA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.880e-43
Identity = 93/149 (62.42%), Postives = 113/149 (75.84%), Query Frame = 2
Query:  197 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-------KD--YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGAD 616
            ++R RNIGI AHID+GKTT TERIL+YTG+IH+I E    DG  ++MD MD E+E+GITIQSAAT+  W       KD  Y++NIIDTPGHVDFT+EVER+LRVLDGAI VL    GV+ Q+ TV RQ   Y VPRL F+NK+D+MGAD
Sbjct:    8 LDRTRNIGIMAHIDAGKTTTTERILYYTGKIHKIGETH--DGA-SQMDFMDQEKERGITIQSAATTAIWHGFHEQWKDTPYRVNIIDTPGHVDFTIEVERSLRVLDGAIAVLDGAAGVEPQTETVWRQATTYAVPRLVFVNKMDKMGAD 153          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_MICLC (Elongation factor G OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=fusA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.880e-43
Identity = 88/140 (62.86%), Postives = 109/140 (77.86%), Query Frame = 2
Query:  197 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGAD 616
            + ++RNIGI AHID+GKTT TERILFYTG  H++ E    DG GA  D M+ E+E+GITI SAA +C W D+QINIIDTPGHVDFTVEVER+LRVLDGA+ V     GV+ QS TV RQ  +Y+VPR+ F+NK+D++GAD
Sbjct:    9 LHKVRNIGIMAHIDAGKTTTTERILFYTGVNHKLGETH--DG-GATTDWMEQEKERGITITSAAVTCFWNDHQINIIDTPGHVDFTVEVERSLRVLDGAVAVFDGKEGVEPQSETVWRQADKYDVPRICFVNKMDKLGAD 145          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_LAWIP (Elongation factor G OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=fusA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.880e-43
Identity = 89/140 (63.57%), Postives = 109/140 (77.86%), Query Frame = 2
Query:  197 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGAD 616
            +E+ RNIGI AHID+GKTT TERIL+YTG  H+I E    DG    MD M+ E+E+GITI SAAT+C W  Y+INIIDTPGHVDFT+EVER+LRVLDGA+ V  +V GV+ QS TV RQ  RY VPR+ F+NK+DR+GA+
Sbjct:    7 IEKQRNIGIMAHIDAGKTTTTERILYYTGVSHKIGETH--DGAST-MDWMEQEQERGITITSAATTCFWDGYRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQSETVWRQANRYGVPRVCFVNKMDRIGAN 143          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_LACF3 (Elongation factor G OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=fusA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.880e-43
Identity = 90/140 (64.29%), Postives = 111/140 (79.29%), Query Frame = 2
Query:  197 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGAD 616
            +E+ RNIGI AHID+GKTT TERIL+YTG+IH+I E    DG  ++MD M+ E+E+GITI SAAT+  WKD +INIIDTPGHVDFTVEVERALRVLDGA+ VL +  GV+ Q+ TV RQ   + VPRL F NK+D+MGA+
Sbjct:    9 LEKTRNIGIMAHIDAGKTTATERILYYTGKIHKIGETH--DGA-SQMDWMEEEKERGITITSAATTAVWKDTRINIIDTPGHVDFTVEVERALRVLDGAVTVLDAQAGVEPQTETVWRQADDFNVPRLVFANKMDKMGAN 145          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_HAEDU (Elongation factor G OS=Haemophilus ducreyi GN=fusA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.880e-43
Identity = 91/143 (63.64%), Postives = 112/143 (78.32%), Query Frame = 2
Query:  209 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-------KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGAD 616
            RNIGISAHID+GKTT TERILFYTG  H+I EV   DG  A MD M+ E+E+GITI SAAT+  W       + ++IN+IDTPGHVDFT+EVER++RVLDGA++V C+VGGVQ QS TV RQ  +Y VPR+AF+NK+DR GA+
Sbjct:   11 RNIGISAHIDAGKTTTTERILFYTGVSHKIGEVH--DGA-ATMDWMEQEQERGITITSAATTAFWSGMSQQYQQHRINVIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYGVPRIAFVNKMDRTGAN 150          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_CHLMU (Elongation factor G OS=Chlamydia muridarum GN=fusA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.880e-43
Identity = 90/140 (64.29%), Postives = 111/140 (79.29%), Query Frame = 2
Query:  197 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGAD 616
            ++ +RNIGI AHID+GKTT TERILFY GR H+I EV   +G GA MD M+ E+E+GITI SAAT+  W   +INIIDTPGHVDFT+EVER+LRVLDGA+ V  +V GV+ QS TV RQ  +Y VPR+AF+NK+DRMGA+
Sbjct:    8 LDAIRNIGIMAHIDAGKTTTTERILFYAGRTHKIGEVH--EG-GATMDWMEQEQERGITITSAATTVFWLGSKINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQANKYGVPRVAFVNKMDRMGAN 144          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_BACWK (Elongation factor G OS=Bacillus weihenstephanensis (strain KBAB4) GN=fusA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.880e-43
Identity = 88/141 (62.41%), Postives = 112/141 (79.43%), Query Frame = 2
Query:  194 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGAD 616
            S+E  RNIGI AHID+GKTT TERIL+YTGRIH+I E    +G  ++MD M+ E+E+GITI SAAT+  WK +++NIIDTPGHVDFTVEVER+LRVLDGA+ VL +  GV+ Q+ TV RQ   Y VPR+ F+NK+D++GAD
Sbjct:    6 SLENTRNIGIMAHIDAGKTTATERILYYTGRIHKIGETH--EGA-SQMDWMEQEQERGITITSAATTAQWKGHRVNIIDTPGHVDFTVEVERSLRVLDGAVAVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKIGAD 143          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_BACHK (Elongation factor G OS=Bacillus thuringiensis subsp. konkukian GN=fusA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.880e-43
Identity = 88/141 (62.41%), Postives = 112/141 (79.43%), Query Frame = 2
Query:  194 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGAD 616
            S+E  RNIGI AHID+GKTT TERIL+YTGRIH+I E    +G  ++MD M+ E+E+GITI SAAT+  WK +++NIIDTPGHVDFTVEVER+LRVLDGA+ VL +  GV+ Q+ TV RQ   Y VPR+ F+NK+D++GAD
Sbjct:    6 SLENTRNIGIMAHIDAGKTTATERILYYTGRIHKIGETH--EGA-SQMDWMEQEQERGITITSAATTAQWKGHRVNIIDTPGHVDFTVEVERSLRVLDGAVAVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKIGAD 143          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_BACCZ (Elongation factor G OS=Bacillus cereus (strain ZK / E33L) GN=fusA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.880e-43
Identity = 88/141 (62.41%), Postives = 112/141 (79.43%), Query Frame = 2
Query:  194 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGAD 616
            S+E  RNIGI AHID+GKTT TERIL+YTGRIH+I E    +G  ++MD M+ E+E+GITI SAAT+  WK +++NIIDTPGHVDFTVEVER+LRVLDGA+ VL +  GV+ Q+ TV RQ   Y VPR+ F+NK+D++GAD
Sbjct:    6 SLENTRNIGIMAHIDAGKTTATERILYYTGRIHKIGETH--EGA-SQMDWMEQEQERGITITSAATTAQWKGHRVNIIDTPGHVDFTVEVERSLRVLDGAVAVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKIGAD 143          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_BACCR (Elongation factor G OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=fusA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.880e-43
Identity = 88/141 (62.41%), Postives = 112/141 (79.43%), Query Frame = 2
Query:  194 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGAD 616
            S+E  RNIGI AHID+GKTT TERIL+YTGRIH+I E    +G  ++MD M+ E+E+GITI SAAT+  WK +++NIIDTPGHVDFTVEVER+LRVLDGA+ VL +  GV+ Q+ TV RQ   Y VPR+ F+NK+D++GAD
Sbjct:    6 SLENTRNIGIMAHIDAGKTTATERILYYTGRIHKIGETH--EGA-SQMDWMEQEQERGITITSAATTAQWKGHRVNIIDTPGHVDFTVEVERSLRVLDGAVAVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKIGAD 143          
The following BLAST results are available for this feature:
BLAST of FC925294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFG_OENOB7.880e-4362.42Elongation factor G OS=Oenococcus oeni (strain BAA... [more]
EFG_MICLC7.880e-4362.86Elongation factor G OS=Micrococcus luteus (strain ... [more]
EFG_LAWIP7.880e-4363.57Elongation factor G OS=Lawsonia intracellularis (s... [more]
EFG_LACF37.880e-4364.29Elongation factor G OS=Lactobacillus fermentum (st... [more]
EFG_HAEDU7.880e-4363.64Elongation factor G OS=Haemophilus ducreyi GN=fusA... [more]
EFG_CHLMU7.880e-4364.29Elongation factor G OS=Chlamydia muridarum GN=fusA... [more]
EFG_BACWK7.880e-4362.41Elongation factor G OS=Bacillus weihenstephanensis... [more]
EFG_BACHK7.880e-4362.41Elongation factor G OS=Bacillus thuringiensis subs... [more]
EFG_BACCZ7.880e-4362.41Elongation factor G OS=Bacillus cereus (strain ZK ... [more]
EFG_BACCR7.880e-4362.41Elongation factor G OS=Bacillus cereus (strain ATC... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP3YF17FM1 TF Citrus clementina cDNA clone KN0AAP3YF17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925294 ID=FC925294; Name=FC925294; organism=Citrus clementina; type=EST; length=679bp
ATTCCCACGATCTCCAGCACCACGTCTCCTCTACACTCTCTTCTCCTCTT
CGAGAACGACACCGACCAAATCCTCACCCCAATCTCCGTCTGCAGCCCTC
CTCCAAGGAAACTTCCACCTCCAATCGCGGCAGTTCTCGGCGGGAGGAAA
CCTCGCACGTGCGAAGGATGATAAGGAGCCATGGTGGAAGGAATCAATGG
AGCGGCTCCGAAATATCGGAATCTCGGCACATATCGATTCCGGAAAAACT
ACACTAACCGAGCGAATTCTGTTTTACACTGGACGGATTCACGAGATTCA
CGAGGTTCGAGGGCGAGACGGCGTCGGCGCCAAAATGGATTCTATGGATT
TGGAGCGTGAGAAAGGTATCACAATTCAGTCAGCCGCCACTAGCTGTGCT
TGGAAGGATTACCAGATTAATATAATTGACACTCCTGGACACGTAGACTT
CACAGTTGAAGTAGAAAGGGCTTTGCGAGTTCTTGATGGCGCAATTCTTG
TGCTTTGTAGTGTTGGTGGCGTGCAAAGTCAATCAATTACCGTTGACCGG
CAAATGAGGAGATACGAGGTGCCAAGACTGGCTTTCATTAACAAACTTGA
TAGAATGGGAGCTGATCCATGGAAAGTTTTTGGATCAGGCAAGGGCTAAG
CTGGCGCACCACCTGTGCTGCTGTGCAAG
back to top