FC925294

Overview
NameFC925294
Unique NameFC925294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_COCIM (Elongation factor G, mitochondrial OS=Coccidioides immitis GN=MEF1 PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 8.380e-61
Identity = 113/161 (70.19%), Postives = 135/161 (83.85%), Query Frame = 2
Query:  167 DDKEPWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW--------KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWK 625
            +  +P     + ++RNIGI+AHIDSGKTT TER+LFYTGRI  IHEVRGRD VGAKMDSMDLEREKGITIQSAAT C W        + Y IN+IDTPGH+DFT+EVERALRVLDGA+L+LC+V GVQSQ+ITVDRQMRRY VPR++FINK+DRMG++P++
Sbjct:   88 ESMDPAEAARISKVRNIGIAAHIDSGKTTSTERVLFYTGRIQAIHEVRGRDSVGAKMDSMDLEREKGITIQSAATFCDWVKKENGKDEKYHINLIDTPGHIDFTIEVERALRVLDGAVLILCAVSGVQSQTITVDRQMRRYNVPRISFINKMDRMGSNPFR 248          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_CANGA (Elongation factor G, mitochondrial OS=Candida glabrata GN=MEF1 PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.867e-60
Identity = 111/149 (74.50%), Postives = 130/149 (87.25%), Query Frame = 2
Query:  191 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW----KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWK 625
            ++ ++LRNIGISAHIDSGKTT TER+L+YT RI EIHEVRGRD VGA MD MDLEREKGITIQSAAT C+W      Y  N+IDTPGH+DFT+EVERALRVLDGA+LV+C+V GVQSQ++TVDRQMRRY VPR+ FINK+DRMGA+P+K
Sbjct:   62 QNQQKLRNIGISAHIDSGKTTFTERVLYYTKRIKEIHEVRGRDNVGATMDFMDLEREKGITIQSAATYCSWDKDKNSYHFNLIDTPGHIDFTIEVERALRVLDGAVLVVCAVSGVQSQTVTVDRQMRRYNVPRVTFINKMDRMGANPFK 210          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_ASPOR (Elongation factor G, mitochondrial OS=Aspergillus oryzae GN=mef1 PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.867e-60
Identity = 122/194 (62.89%), Postives = 148/194 (76.29%), Query Frame = 2
Query:  110 NFHLQSRQFSAG-----------GNLARAK--DDKEPWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW--KD-------YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWK 625
            N HLQ R+ ++G            NL++    ++ +P     + R+RNIGI+AHIDSGKTT TER+LFYTGRI  IHEVRG D VGAKMDSMDLEREKGITIQSAAT C W  KD       Y  N+IDTPGH+DFT+EVERALRVLDGA+++LC+V GVQSQ+ITVDRQMRRY VPR++F+NK+DRMGA+P+K
Sbjct:   54 NKHLQQRRNASGTAAAVLEAAASDNLSQEAIIENLDPVEAGRLSRVRNIGIAAHIDSGKTTCTERVLFYTGRIKAIHEVRGGDKVGAKMDSMDLEREKGITIQSAATFCDWVKKDEDGKENKYHFNLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTITVDRQMRRYNVPRISFVNKMDRMGANPFK 247          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_ASPFN (Elongation factor G, mitochondrial OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=mef1 PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.867e-60
Identity = 122/194 (62.89%), Postives = 148/194 (76.29%), Query Frame = 2
Query:  110 NFHLQSRQFSAG-----------GNLARAK--DDKEPWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW--KD-------YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWK 625
            N HLQ R+ ++G            NL++    ++ +P     + R+RNIGI+AHIDSGKTT TER+LFYTGRI  IHEVRG D VGAKMDSMDLEREKGITIQSAAT C W  KD       Y  N+IDTPGH+DFT+EVERALRVLDGA+++LC+V GVQSQ+ITVDRQMRRY VPR++F+NK+DRMGA+P+K
Sbjct:   54 NKHLQQRRNASGTAAAVLEAAASDNLSQEAIIENLDPVEAGRLSRVRNIGIAAHIDSGKTTCTERVLFYTGRIKAIHEVRGGDKVGAKMDSMDLEREKGITIQSAATFCDWVKKDEDGKENKYHFNLIDTPGHIDFTIEVERALRVLDGAVMILCAVSGVQSQTITVDRQMRRYNVPRISFVNKMDRMGANPFK 247          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_CRYNE (Elongation factor G, mitochondrial OS=Cryptococcus neoformans GN=MEF1 PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.438e-60
Identity = 118/173 (68.21%), Postives = 136/173 (78.61%), Query Frame = 2
Query:  188 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW--------------------KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVFGSGKG 646
            K  + R RN+GISAHIDSGKTTLTER+L+YTGRI +IHEVRGRD VGAKMDSM+LEREKGITIQSAAT   W                    + + INIIDTPGHVDFT+EVERALRVLDGA+LVLC+V GVQSQ+ITVDRQMRRY VPRLAFINK+DR G++P++V G  +G
Sbjct:   92 KLRLRRQRNVGISAHIDSGKTTLTERVLYYTGRIRDIHEVRGRDAVGAKMDSMELEREKGITIQSAATFADWVAPKPPTELKEGETVGNTDKQKFAINIIDTPGHVDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRYNVPRLAFINKMDRAGSNPFRVIGQLRG 264          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_DANRE (Elongation factor G, mitochondrial OS=Danio rerio GN=gfm1 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.185e-60
Identity = 110/140 (78.57%), Postives = 130/140 (92.86%), Query Frame = 2
Query:  200 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADP 619
            ER+RNIGISAHIDSGKTTLTER+L+YTGRI E+HEVRG+DGVGA MDSM+LER++GITIQSAAT   WK++ INIIDTPGHVDFT+EVER+LRVLDGA+LVLC+VGGVQ Q++TV+RQM+RY VP L FINKLDR+GA+P
Sbjct:   39 ERIRNIGISAHIDSGKTTLTERVLYYTGRIAEMHEVRGKDGVGAIMDSMELERQRGITIQSAATYTMWKNHNINIIDTPGHVDFTIEVERSLRVLDGAVLVLCAVGGVQCQTVTVNRQMKRYSVPFLTFINKLDRLGANP 178          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG1_TREPA (Elongation factor G 1 OS=Treponema pallidum GN=fusA PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.159e-60
Identity = 111/140 (79.29%), Postives = 127/140 (90.71%), Query Frame = 2
Query:  209 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 628
            RNIGISAHIDSGKTTL+ERILFY  RIH IHEVRG+DGVGA MD+M+LERE+GITIQSA+T   WK + IN+IDTPGHVDFT+EVER+LRVLDGA+LVLCSV GVQSQSITVDRQ+RRY VPR++FINK DR GA+P+KV
Sbjct:    9 RNIGISAHIDSGKTTLSERILFYCDRIHAIHEVRGKDGVGATMDNMELERERGITIQSASTQVQWKGHTINVIDTPGHVDFTIEVERSLRVLDGAVLVLCSVAGVQSQSITVDRQLRRYHVPRISFINKCDRTGANPFKV 148          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_NEMVE (Elongation factor G, mitochondrial OS=Nematostella vectensis GN=v1g236547 PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.432e-60
Identity = 112/138 (81.16%), Postives = 128/138 (92.75%), Query Frame = 2
Query:  203 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGAD 616
            RLRNIGISAHIDSGKTTLTER+LFYTGRI  +HEV+G+D VGA MDSM+LER++GITIQSAAT   WKD+ INIIDTPGHVDFTVEVERALRVLDGA+LVLC+VGGVQSQ++TV+RQM+RY VP +AFINKLDRMGA+
Sbjct:   39 RLRNIGISAHIDSGKTTLTERLLFYTGRISHMHEVKGKDNVGATMDSMELERQRGITIQSAATYVNWKDHNINIIDTPGHVDFTVEVERALRVLDGAVLVLCAVGGVQSQTLTVNRQMKRYNVPCIAFINKLDRMGAN 176          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_XENLA (Elongation factor G, mitochondrial OS=Xenopus laevis GN=gfm1 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.210e-59
Identity = 110/140 (78.57%), Postives = 128/140 (91.43%), Query Frame = 2
Query:  200 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADP 619
            ER+RNIGISAHIDSGKTTLTER+L+YTGRI  +HEV+G+DGVGA MDSM+LER++GITIQSAAT   WKD  INIIDTPGHVDFT+EVERALRVLDGA+LVLC+VGGVQ Q++TV+RQM+RY VP L FINKLDRMG++P
Sbjct:   42 ERIRNIGISAHIDSGKTTLTERVLYYTGRIAHMHEVKGKDGVGAVMDSMELERQRGITIQSAATYTMWKDTNINIIDTPGHVDFTIEVERALRVLDGAVLVLCAVGGVQCQTMTVNRQMKRYNVPFLTFINKLDRMGSNP 181          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG1_BORGA (Elongation factor G 1 OS=Borrelia garinii GN=fusA1 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.210e-59
Identity = 112/142 (78.87%), Postives = 127/142 (89.44%), Query Frame = 2
Query:  203 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 628
            +LRNIGISAHIDSGKTTLTERILFY  +IH IHEV+G+DGVGA MDSM+LERE+GITI SAAT   WKD+ INIIDTPGHVDFT+EVER+LRVLDGAILVL SV GVQSQSITVDRQ++RY VPRLAF+NK D+ GA+P+ V
Sbjct:    5 KLRNIGISAHIDSGKTTLTERILFYCNKIHAIHEVKGKDGVGATMDSMELERERGITIASAATHVEWKDFPINIIDTPGHVDFTIEVERSLRVLDGAILVLDSVAGVQSQSITVDRQLKRYSVPRLAFVNKCDKTGANPYNV 146          
The following BLAST results are available for this feature:
BLAST of FC925294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFGM_COCIM8.380e-6170.19Elongation factor G, mitochondrial OS=Coccidioides... [more]
EFGM_CANGA1.867e-6074.50Elongation factor G, mitochondrial OS=Candida glab... [more]
EFGM_ASPOR1.867e-6062.89Elongation factor G, mitochondrial OS=Aspergillus ... [more]
EFGM_ASPFN1.867e-6062.89Elongation factor G, mitochondrial OS=Aspergillus ... [more]
EFGM_CRYNE2.438e-6068.21Elongation factor G, mitochondrial OS=Cryptococcus... [more]
EFGM_DANRE3.185e-6078.57Elongation factor G, mitochondrial OS=Danio rerio ... [more]
EFG1_TREPA4.159e-6079.29Elongation factor G 1 OS=Treponema pallidum GN=fus... [more]
EFGM_NEMVE5.432e-6081.16Elongation factor G, mitochondrial OS=Nematostella... [more]
EFGM_XENLA1.210e-5978.57Elongation factor G, mitochondrial OS=Xenopus laev... [more]
EFG1_BORGA1.210e-5978.87Elongation factor G 1 OS=Borrelia garinii GN=fusA1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YF17FM1 TF Citrus clementina cDNA clone KN0AAP3YF17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925294 ID=FC925294; Name=FC925294; organism=Citrus clementina; type=EST; length=679bp
ATTCCCACGATCTCCAGCACCACGTCTCCTCTACACTCTCTTCTCCTCTT
CGAGAACGACACCGACCAAATCCTCACCCCAATCTCCGTCTGCAGCCCTC
CTCCAAGGAAACTTCCACCTCCAATCGCGGCAGTTCTCGGCGGGAGGAAA
CCTCGCACGTGCGAAGGATGATAAGGAGCCATGGTGGAAGGAATCAATGG
AGCGGCTCCGAAATATCGGAATCTCGGCACATATCGATTCCGGAAAAACT
ACACTAACCGAGCGAATTCTGTTTTACACTGGACGGATTCACGAGATTCA
CGAGGTTCGAGGGCGAGACGGCGTCGGCGCCAAAATGGATTCTATGGATT
TGGAGCGTGAGAAAGGTATCACAATTCAGTCAGCCGCCACTAGCTGTGCT
TGGAAGGATTACCAGATTAATATAATTGACACTCCTGGACACGTAGACTT
CACAGTTGAAGTAGAAAGGGCTTTGCGAGTTCTTGATGGCGCAATTCTTG
TGCTTTGTAGTGTTGGTGGCGTGCAAAGTCAATCAATTACCGTTGACCGG
CAAATGAGGAGATACGAGGTGCCAAGACTGGCTTTCATTAACAAACTTGA
TAGAATGGGAGCTGATCCATGGAAAGTTTTTGGATCAGGCAAGGGCTAAG
CTGGCGCACCACCTGTGCTGCTGTGCAAG
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