FC925294

Overview
NameFC925294
Unique NameFC925294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG1_BORBU (Elongation factor G 1 OS=Borrelia burgdorferi GN=fusA PE=3 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.210e-59
Identity = 112/142 (78.87%), Postives = 127/142 (89.44%), Query Frame = 2
Query:  203 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 628
            +LRNIGISAHIDSGKTTLTERILFY  +IH IHEV+G+DGVGA MDSM+LERE+GITI SAAT   WKD+ INIIDTPGHVDFT+EVER+LRVLDGAILVL SV GVQSQSITVDRQ++RY VPRLAF+NK D+ GA+P+ V
Sbjct:    5 KLRNIGISAHIDSGKTTLTERILFYCNKIHAIHEVKGKDGVGATMDSMELERERGITIASAATHVEWKDFPINIIDTPGHVDFTIEVERSLRVLDGAILVLDSVAGVQSQSITVDRQLKRYSVPRLAFVNKCDKTGANPYNV 146          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG1_BORAP (Elongation factor G 1 OS=Borrelia afzelii (strain PKo) GN=fusA1 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.210e-59
Identity = 112/142 (78.87%), Postives = 127/142 (89.44%), Query Frame = 2
Query:  203 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 628
            +LRNIGISAHIDSGKTTLTERILFY  +IH IHEV+G+DGVGA MDSM+LERE+GITI SAAT   WKD+ INIIDTPGHVDFT+EVER+LRVLDGAILVL SV GVQSQSITVDRQ++RY VPRLAF+NK D+ GA+P+ V
Sbjct:    5 KLRNIGISAHIDSGKTTLTERILFYCNKIHAIHEVKGKDGVGATMDSMELERERGITIASAATHVEWKDFPINIIDTPGHVDFTIEVERSLRVLDGAILVLDSVAGVQSQSITVDRQLKRYSVPRLAFVNKCDKTGANPYNV 146          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_PONAB (Elongation factor G, mitochondrial OS=Pongo abelii GN=GFM1 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.580e-59
Identity = 109/140 (77.86%), Postives = 129/140 (92.14%), Query Frame = 2
Query:  200 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADP 619
            E++RNIGISAHIDSGKTTLTER+L+YTGRI ++HEV+G+DGVGA MDSM+LER++GITIQSAAT   WKD  INIIDTPGHVDFT+EVERALRVLDGA+LVLC+VGGVQ Q++TV+RQM+RY VP L FINKLDRMG++P
Sbjct:   44 EKIRNIGISAHIDSGKTTLTERVLYYTGRIAKMHEVKGKDGVGAVMDSMELERQRGITIQSAATYTMWKDVNINIIDTPGHVDFTIEVERALRVLDGAVLVLCAVGGVQCQTMTVNRQMKRYNVPFLTFINKLDRMGSNP 183          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_HUMAN (Elongation factor G, mitochondrial OS=Homo sapiens GN=GFM1 PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 1.580e-59
Identity = 109/140 (77.86%), Postives = 129/140 (92.14%), Query Frame = 2
Query:  200 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADP 619
            E++RNIGISAHIDSGKTTLTER+L+YTGRI ++HEV+G+DGVGA MDSM+LER++GITIQSAAT   WKD  INIIDTPGHVDFT+EVERALRVLDGA+LVLC+VGGVQ Q++TV+RQM+RY VP L FINKLDRMG++P
Sbjct:   44 EKIRNIGISAHIDSGKTTLTERVLYYTGRIAKMHEVKGKDGVGAVMDSMELERQRGITIQSAATYTMWKDVNINIIDTPGHVDFTIEVERALRVLDGAVLVLCAVGGVQCQTMTVNRQMKRYNVPFLTFINKLDRMGSNP 183          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_MOUSE (Elongation factor G, mitochondrial OS=Mus musculus GN=Gfm1 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.521e-59
Identity = 109/140 (77.86%), Postives = 127/140 (90.71%), Query Frame = 2
Query:  200 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADP 619
            E++RNIGISAHIDSGKTTLTER+L+YTGRI  +HEV+G+DGVGA MDSM+LER++GITIQSAAT   WKD  INIIDTPGHVDFT+EVERALRVLDGA+LVLC+VGGVQ Q++TV RQM+RY VP L FINKLDRMG++P
Sbjct:   45 EKIRNIGISAHIDSGKTTLTERVLYYTGRIATMHEVKGKDGVGAVMDSMELERQRGITIQSAATYTMWKDININIIDTPGHVDFTIEVERALRVLDGAVLVLCAVGGVQCQTMTVSRQMKRYNVPFLTFINKLDRMGSNP 184          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_RAT (Elongation factor G, mitochondrial OS=Rattus norvegicus GN=Gfm1 PE=1 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 7.844e-59
Identity = 108/140 (77.14%), Postives = 127/140 (90.71%), Query Frame = 2
Query:  200 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADP 619
            E++RNIGISAHIDSGKTTLTER+L+YTGRI  +HEV+G+DGVGA MDSM+LER++GITIQSAAT   W+D  INIIDTPGHVDFT+EVERALRVLDGA+LVLC+VGGVQ Q++TV RQM+RY VP L FINKLDRMG++P
Sbjct:   45 EKIRNIGISAHIDSGKTTLTERVLYYTGRIATMHEVKGKDGVGAVMDSMELERQRGITIQSAATYTMWRDVNINIIDTPGHVDFTIEVERALRVLDGAVLVLCAVGGVQCQTMTVSRQMKRYNVPFLTFINKLDRMGSNP 184          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_CHAGB (Elongation factor G, mitochondrial OS=Chaetomium globosum GN=MEF1 PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.893e-58
Identity = 107/151 (70.86%), Postives = 130/151 (86.09%), Query Frame = 2
Query:  197 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--------YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWK 625
            +  +RNIGI+AHIDSGKTT++ERILFYTGR   IHEVRGRDGVGAKMDSM+LERE+GITIQSAAT   WK         Y  N+IDTPGH+DFT+EVERA+RVLDGA++VLC+V GVQSQ+ITVDRQM+RY VPR++F+NK+DRMG++P+K
Sbjct:   96 LSMVRNIGIAAHIDSGKTTVSERILFYTGRTKAIHEVRGRDGVGAKMDSMELERERGITIQSAATFADWKKVENGVEETYHFNLIDTPGHIDFTIEVERAMRVLDGAVMVLCAVSGVQSQTITVDRQMKRYNVPRISFVNKMDRMGSNPFK 246          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_RHOBA (Elongation factor G OS=Rhodopirellula baltica GN=fusA PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.523e-57
Identity = 110/145 (75.86%), Postives = 130/145 (89.66%), Query Frame = 2
Query:  194 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 628
            ++E++RNIGISAHIDSGKTTL+ERILFY+GRIH+I +VRG  G GA MD M+LE+E+GITI SAATS     Y IN+IDTPGHVDFTVEVER+LRVLDGA+LVLCSVGGVQSQSITVDRQM+RY++PRLAFINK+DR GA+P +V
Sbjct:    2 NLEKVRNIGISAHIDSGKTTLSERILFYSGRIHKIEDVRG-GGDGATMDHMELEKERGITITSAATSVTHNGYHINLIDTPGHVDFTVEVERSLRVLDGAVLVLCSVGGVQSQSITVDRQMKRYQIPRLAFINKMDRTGANPRRV 145          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_CAEEL (Elongation factor G, mitochondrial OS=Caenorhabditis elegans GN=F29C12.4 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.060e-55
Identity = 106/143 (74.13%), Postives = 121/143 (84.62%), Query Frame = 2
Query:  197 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWK 625
            +ER+RNIGISAHIDSGKTT+TERIL+Y GRI  +HEVRG+D VGA MD MDLER++GITIQSAAT   W    INIIDTPGHVDFTVEVERALRVLDGA+LVLC VGGVQSQ+ TV+RQ+ RY VP + F+NK+DR GA P K
Sbjct:   41 IERIRNIGISAHIDSGKTTVTERILYYAGRIDSMHEVRGKDDVGATMDFMDLERQRGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCGVGGVQSQTFTVNRQLARYNVPFICFVNKMDRNGATPLK 183          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFGM_CAEBR (Elongation factor G, mitochondrial OS=Caenorhabditis briggsae GN=CBG02783 PE=3 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.362e-55
Identity = 105/143 (73.43%), Postives = 121/143 (84.62%), Query Frame = 2
Query:  197 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWK 625
            +ER+RNIGISAHIDSGKTT+TERIL+Y GRI  +HEVRG+D VGA MD M+LER++GITIQSAAT   W    INIIDTPGHVDFTVEVERALRVLDGA+LVLC VGGVQSQ+ TV+RQ+ RY VP + F+NK+DR GA P K
Sbjct:   40 IERIRNIGISAHIDSGKTTVTERILYYAGRIDSMHEVRGKDDVGATMDFMELERQRGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCGVGGVQSQTFTVNRQLARYNVPFICFVNKMDRNGASPLK 182          
The following BLAST results are available for this feature:
BLAST of FC925294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFG1_BORBU1.210e-5978.87Elongation factor G 1 OS=Borrelia burgdorferi GN=f... [more]
EFG1_BORAP1.210e-5978.87Elongation factor G 1 OS=Borrelia afzelii (strain ... [more]
EFGM_PONAB1.580e-5977.86Elongation factor G, mitochondrial OS=Pongo abelii... [more]
EFGM_HUMAN1.580e-5977.86Elongation factor G, mitochondrial OS=Homo sapiens... [more]
EFGM_MOUSE3.521e-5977.86Elongation factor G, mitochondrial OS=Mus musculus... [more]
EFGM_RAT7.844e-5977.14Elongation factor G, mitochondrial OS=Rattus norve... [more]
EFGM_CHAGB3.893e-5870.86Elongation factor G, mitochondrial OS=Chaetomium g... [more]
EFG_RHOBA2.523e-5775.86Elongation factor G OS=Rhodopirellula baltica GN=f... [more]
EFGM_CAEEL1.060e-5574.13Elongation factor G, mitochondrial OS=Caenorhabdit... [more]
EFGM_CAEBR2.362e-5573.43Elongation factor G, mitochondrial OS=Caenorhabdit... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YF17FM1 TF Citrus clementina cDNA clone KN0AAP3YF17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925294 ID=FC925294; Name=FC925294; organism=Citrus clementina; type=EST; length=679bp
ATTCCCACGATCTCCAGCACCACGTCTCCTCTACACTCTCTTCTCCTCTT
CGAGAACGACACCGACCAAATCCTCACCCCAATCTCCGTCTGCAGCCCTC
CTCCAAGGAAACTTCCACCTCCAATCGCGGCAGTTCTCGGCGGGAGGAAA
CCTCGCACGTGCGAAGGATGATAAGGAGCCATGGTGGAAGGAATCAATGG
AGCGGCTCCGAAATATCGGAATCTCGGCACATATCGATTCCGGAAAAACT
ACACTAACCGAGCGAATTCTGTTTTACACTGGACGGATTCACGAGATTCA
CGAGGTTCGAGGGCGAGACGGCGTCGGCGCCAAAATGGATTCTATGGATT
TGGAGCGTGAGAAAGGTATCACAATTCAGTCAGCCGCCACTAGCTGTGCT
TGGAAGGATTACCAGATTAATATAATTGACACTCCTGGACACGTAGACTT
CACAGTTGAAGTAGAAAGGGCTTTGCGAGTTCTTGATGGCGCAATTCTTG
TGCTTTGTAGTGTTGGTGGCGTGCAAAGTCAATCAATTACCGTTGACCGG
CAAATGAGGAGATACGAGGTGCCAAGACTGGCTTTCATTAACAAACTTGA
TAGAATGGGAGCTGATCCATGGAAAGTTTTTGGATCAGGCAAGGGCTAAG
CTGGCGCACCACCTGTGCTGCTGTGCAAG
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