FC925294

Overview
NameFC925294
Unique NameFC925294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_WOLSU (Elongation factor G OS=Wolinella succinogenes GN=fusA PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.314e-49
Identity = 97/147 (65.99%), Postives = 119/147 (80.95%), Query Frame = 2
Query:  188 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 628
            K  + R+RNIGI+AHID+GKTT TERILFYTG  H++ EV   DG  A MD M+ E+E+GITI SAAT+C WKDYQ+NIIDTPGHVDFT+EVER++RVLDGA+ V CSVGGVQ QS TV RQ  +Y VPR+ F+NK+DR+GA+ + V
Sbjct:    4 KIPLNRIRNIGIAAHIDAGKTTTTERILFYTGVSHKVGEVH--DGA-ATMDWMEQEKERGITITSAATTCFWKDYQVNIIDTPGHVDFTIEVERSMRVLDGAVAVFCSVGGVQPQSETVWRQANKYGVPRMVFVNKMDRIGANFYNV 147          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_SYMTH (Elongation factor G OS=Symbiobacterium thermophilum GN=fusA PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.314e-49
Identity = 101/158 (63.92%), Postives = 125/158 (79.11%), Query Frame = 2
Query:  194 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVFGSGKG*AGAPPV 667
            S++RLRNIGI AHID+GKTT TERILFYTGR H++ E    +G  A MD M  E+E+GITIQSAAT+C+WKD++INIIDTPGHVDFTVEVER+LRVLDGA+ V C+ GGV+ QS TV RQ  +Y VPRLA++NK+D +GAD ++V    +   GA PV
Sbjct:    6 SLDRLRNIGIMAHIDAGKTTTTERILFYTGRTHKLGETH--EGA-ATMDFMVQEQERGITIQSAATTCSWKDHRINIIDTPGHVDFTVEVERSLRVLDGAVAVFCAKGGVEPQSETVWRQADKYGVPRLAYVNKMDTIGADFFRVIRMMEERLGARPV 160          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_NITSB (Elongation factor G OS=Nitratiruptor sp. (strain SB155-2) GN=fusA PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.314e-49
Identity = 97/147 (65.99%), Postives = 120/147 (81.63%), Query Frame = 2
Query:  188 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKV 628
            K  +E++RNIGI+AHID+GKTT TERIL+YTG  H+I EV   +G  A MD MD E+E+GITI SAAT+C WKD+QINIIDTPGHVDFT+EVER++RVLDGA+ V C+VGGVQ QS TV RQ  +Y VPR+ F+NK+DR+GAD + V
Sbjct:    4 KTPIEKVRNIGIAAHIDAGKTTTTERILYYTGISHKIGEVH--EGA-ATMDWMDQEKERGITITSAATTCFWKDHQINIIDTPGHVDFTIEVERSMRVLDGAVAVFCAVGGVQPQSETVWRQANKYHVPRIVFVNKMDRIGADFYNV 147          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_PELTS (Elongation factor G OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=fusA PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.359e-49
Identity = 103/159 (64.78%), Postives = 123/159 (77.36%), Query Frame = 2
Query:  197 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVFGSGKG*AGAPPVLL 673
            +E+ RNIGI AHID+GKTT TERILFYTGR+H+I EV   +G  A MD M  E+E+GITI SAATSC W+D QINIIDTPGHVDFTVEVER+LRVLDGA+ V CSVGGV+ QS TV RQ  +Y VPR+A+INK+DR+GAD  +     +   GA PV +
Sbjct:    7 LEKTRNIGIMAHIDAGKTTTTERILFYTGRVHKIGEVH--EGT-ATMDWMAQEQERGITITSAATSCRWRDCQINIIDTPGHVDFTVEVERSLRVLDGAVAVFCSVGGVEPQSETVWRQADKYGVPRIAYINKMDRVGADFHRGIQMIRERLGANPVAI 162          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_CARHZ (Elongation factor G OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=fusA PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.611e-49
Identity = 100/157 (63.69%), Postives = 125/157 (79.62%), Query Frame = 2
Query:  197 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVFGSGKG*AGAPPV 667
            +ER RNIGI AHID+GKTT TERILFYTG++H++ EV   DG  A MD M  E+E+GITI SAAT+C WK+++INIIDTPGHVDFTVEVER+LRVLDGA+ + C+VGGV+ QS TV RQ  +Y VPR+A++NK+DRMGA+ ++V    K   GA PV
Sbjct:    7 LERTRNIGIMAHIDAGKTTTTERILFYTGKVHKMGEVH--DGA-ATMDWMVQEQERGITITSAATTCFWKNHRINIIDTPGHVDFTVEVERSLRVLDGAVAIFCAVGGVEPQSETVWRQADKYGVPRIAYVNKMDRMGANFFEVVRQIKERLGANPV 160          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_THETH (Elongation factor G OS=Thermus thermophilus GN=fusA PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.255e-48
Identity = 99/159 (62.26%), Postives = 126/159 (79.25%), Query Frame = 2
Query:  197 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVFGSGKG*AGAPPVLL 673
            ++RLRNIGI+AHID+GKTT TERIL+YTGRIH+I EV   +G  A MD M+ ERE+GITI +A T+C WKD++INIIDTPGHVDFT+EVER++RVLDGAI+V  S  GV+ QS TV RQ  +Y+VPR+AF NK+D+ GAD W V  + +   GA PV++
Sbjct:    9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH--EGA-ATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVM 164          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_THET8 (Elongation factor G OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=fusA PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.255e-48
Identity = 99/159 (62.26%), Postives = 126/159 (79.25%), Query Frame = 2
Query:  197 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVFGSGKG*AGAPPVLL 673
            ++RLRNIGI+AHID+GKTT TERIL+YTGRIH+I EV   +G  A MD M+ ERE+GITI +A T+C WKD++INIIDTPGHVDFT+EVER++RVLDGAI+V  S  GV+ QS TV RQ  +Y+VPR+AF NK+D+ GAD W V  + +   GA PV++
Sbjct:    9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH--EGA-ATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVM 164          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_SYNP6 (Elongation factor G OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=fusA PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.255e-48
Identity = 96/146 (65.75%), Postives = 119/146 (81.51%), Query Frame = 2
Query:  197 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVFG 634
            +E++RNIGI+AHID+GKTT TERILFY+G +H+I EV   DG  A  D M+ ERE+GITI +AA S +WKDY++NIIDTPGHVDFT+EVER++RVLDG + V CSVGGVQ QS TV RQ  RY VPR+ F+NK+DR GAD +KV+G
Sbjct:    7 LEKVRNIGIAAHIDAGKTTTTERILFYSGVVHKIGEVH--DG-NAVTDWMEQERERGITITAAAISTSWKDYRVNIIDTPGHVDFTIEVERSMRVLDGVVAVFCSVGGVQPQSETVWRQADRYSVPRIVFVNKMDRTGADFFKVYG 149          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_SYNE7 (Elongation factor G OS=Synechococcus elongatus (strain PCC 7942) GN=fusA PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.255e-48
Identity = 96/146 (65.75%), Postives = 119/146 (81.51%), Query Frame = 2
Query:  197 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVFG 634
            +E++RNIGI+AHID+GKTT TERILFY+G +H+I EV   DG  A  D M+ ERE+GITI +AA S +WKDY++NIIDTPGHVDFT+EVER++RVLDG + V CSVGGVQ QS TV RQ  RY VPR+ F+NK+DR GAD +KV+G
Sbjct:    7 LEKVRNIGIAAHIDAGKTTTTERILFYSGVVHKIGEVH--DG-NAVTDWMEQERERGITITAAAISTSWKDYRVNIIDTPGHVDFTIEVERSMRVLDGVVAVFCSVGGVQPQSETVWRQADRYSVPRIVFVNKMDRTGADFFKVYG 149          
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_YERPY (Elongation factor G OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=fusA PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.639e-48
Identity = 104/169 (61.54%), Postives = 127/169 (75.15%), Query Frame = 2
Query:  188 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-------KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVFGSGKG*AGAPPVLL 673
            K  +ER RNIGISAHID+GKTT TERILFYTG  H+I EV   DG  A MD M+ E+E+GITI SAAT+C W       + + +NIIDTPGHVDFT+EVER++RVLDGA++V C+VGGVQ QS TV RQ  +Y+VPR+AF+NK+DRMGA+  +V G  K   GA PV L
Sbjct:    4 KTPIERYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVH--DGA-ATMDWMEQEQERGITITSAATTCFWSGMAKQFEPHHVNIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLRVVGQLKSRLGANPVPL 169          
The following BLAST results are available for this feature:
BLAST of FC925294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFG_WOLSU4.314e-4965.99Elongation factor G OS=Wolinella succinogenes GN=f... [more]
EFG_SYMTH4.314e-4963.92Elongation factor G OS=Symbiobacterium thermophilu... [more]
EFG_NITSB4.314e-4965.99Elongation factor G OS=Nitratiruptor sp. (strain S... [more]
EFG_PELTS7.359e-4964.78Elongation factor G OS=Pelotomaculum thermopropion... [more]
EFG_CARHZ9.611e-4963.69Elongation factor G OS=Carboxydothermus hydrogenof... [more]
EFG_THETH1.255e-4862.26Elongation factor G OS=Thermus thermophilus GN=fus... [more]
EFG_THET81.255e-4862.26Elongation factor G OS=Thermus thermophilus (strai... [more]
EFG_SYNP61.255e-4865.75Elongation factor G OS=Synechococcus sp. (strain A... [more]
EFG_SYNE71.255e-4865.75Elongation factor G OS=Synechococcus elongatus (st... [more]
EFG_YERPY1.639e-4861.54Elongation factor G OS=Yersinia pseudotuberculosis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YF17FM1 TF Citrus clementina cDNA clone KN0AAP3YF17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925294 ID=FC925294; Name=FC925294; organism=Citrus clementina; type=EST; length=679bp
ATTCCCACGATCTCCAGCACCACGTCTCCTCTACACTCTCTTCTCCTCTT
CGAGAACGACACCGACCAAATCCTCACCCCAATCTCCGTCTGCAGCCCTC
CTCCAAGGAAACTTCCACCTCCAATCGCGGCAGTTCTCGGCGGGAGGAAA
CCTCGCACGTGCGAAGGATGATAAGGAGCCATGGTGGAAGGAATCAATGG
AGCGGCTCCGAAATATCGGAATCTCGGCACATATCGATTCCGGAAAAACT
ACACTAACCGAGCGAATTCTGTTTTACACTGGACGGATTCACGAGATTCA
CGAGGTTCGAGGGCGAGACGGCGTCGGCGCCAAAATGGATTCTATGGATT
TGGAGCGTGAGAAAGGTATCACAATTCAGTCAGCCGCCACTAGCTGTGCT
TGGAAGGATTACCAGATTAATATAATTGACACTCCTGGACACGTAGACTT
CACAGTTGAAGTAGAAAGGGCTTTGCGAGTTCTTGATGGCGCAATTCTTG
TGCTTTGTAGTGTTGGTGGCGTGCAAAGTCAATCAATTACCGTTGACCGG
CAAATGAGGAGATACGAGGTGCCAAGACTGGCTTTCATTAACAAACTTGA
TAGAATGGGAGCTGATCCATGGAAAGTTTTTGGATCAGGCAAGGGCTAAG
CTGGCGCACCACCTGTGCTGCTGTGCAAG
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