FC925294

Overview
NameFC925294
Unique NameFC925294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_YERPS (Elongation factor G OS=Yersinia pseudotuberculosis GN=fusA PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.639e-48
Identity = 104/169 (61.54%), Postives = 127/169 (75.15%), Query Frame = 2 
Query:  188 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-------KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVFGSGKG*AGAPPVLL 673
            K  +ER RNIGISAHID+GKTT TERILFYTG  H+I EV   DG  A MD M+ E+E+GITI SAAT+C W       + + +NIIDTPGHVDFT+EVER++RVLDGA++V C+VGGVQ QS TV RQ  +Y+VPR+AF+NK+DRMGA+  +V G  K   GA PV L
Sbjct:    4 KTPIERYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVH--DGA-ATMDWMEQEQERGITITSAATTCFWSGMAKQFEPHHVNIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLRVVGQLKSRLGANPVPL 169
[Close]
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_YERPP (Elongation factor G OS=Yersinia pestis (strain Pestoides F) GN=fusA PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.639e-48
Identity = 104/169 (61.54%), Postives = 127/169 (75.15%), Query Frame = 2 
Query:  188 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-------KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVFGSGKG*AGAPPVLL 673
            K  +ER RNIGISAHID+GKTT TERILFYTG  H+I EV   DG  A MD M+ E+E+GITI SAAT+C W       + + +NIIDTPGHVDFT+EVER++RVLDGA++V C+VGGVQ QS TV RQ  +Y+VPR+AF+NK+DRMGA+  +V G  K   GA PV L
Sbjct:    4 KTPIERYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVH--DGA-ATMDWMEQEQERGITITSAATTCFWSGMAKQFEPHHVNIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLRVVGQLKSRLGANPVPL 169
[Close]
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_YERPN (Elongation factor G OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fusA PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.639e-48
Identity = 104/169 (61.54%), Postives = 127/169 (75.15%), Query Frame = 2 
Query:  188 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-------KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVFGSGKG*AGAPPVLL 673
            K  +ER RNIGISAHID+GKTT TERILFYTG  H+I EV   DG  A MD M+ E+E+GITI SAAT+C W       + + +NIIDTPGHVDFT+EVER++RVLDGA++V C+VGGVQ QS TV RQ  +Y+VPR+AF+NK+DRMGA+  +V G  K   GA PV L
Sbjct:    4 KTPIERYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVH--DGA-ATMDWMEQEQERGITITSAATTCFWSGMAKQFEPHHVNIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLRVVGQLKSRLGANPVPL 169
[Close]
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_YERPG (Elongation factor G OS=Yersinia pestis bv. Antiqua (strain Angola) GN=fusA PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.639e-48
Identity = 104/169 (61.54%), Postives = 127/169 (75.15%), Query Frame = 2 
Query:  188 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-------KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVFGSGKG*AGAPPVLL 673
            K  +ER RNIGISAHID+GKTT TERILFYTG  H+I EV   DG  A MD M+ E+E+GITI SAAT+C W       + + +NIIDTPGHVDFT+EVER++RVLDGA++V C+VGGVQ QS TV RQ  +Y+VPR+AF+NK+DRMGA+  +V G  K   GA PV L
Sbjct:    4 KTPIERYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVH--DGA-ATMDWMEQEQERGITITSAATTCFWSGMAKQFEPHHVNIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLRVVGQLKSRLGANPVPL 169
[Close]
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_YERPE (Elongation factor G OS=Yersinia pestis GN=fusA PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.639e-48
Identity = 104/169 (61.54%), Postives = 127/169 (75.15%), Query Frame = 2 
Query:  188 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-------KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVFGSGKG*AGAPPVLL 673
            K  +ER RNIGISAHID+GKTT TERILFYTG  H+I EV   DG  A MD M+ E+E+GITI SAAT+C W       + + +NIIDTPGHVDFT+EVER++RVLDGA++V C+VGGVQ QS TV RQ  +Y+VPR+AF+NK+DRMGA+  +V G  K   GA PV L
Sbjct:    4 KTPIERYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVH--DGA-ATMDWMEQEQERGITITSAATTCFWSGMAKQFEPHHVNIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLRVVGQLKSRLGANPVPL 169
[Close]
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_YERPB (Elongation factor G OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=fusA PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.639e-48
Identity = 104/169 (61.54%), Postives = 127/169 (75.15%), Query Frame = 2 
Query:  188 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-------KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVFGSGKG*AGAPPVLL 673
            K  +ER RNIGISAHID+GKTT TERILFYTG  H+I EV   DG  A MD M+ E+E+GITI SAAT+C W       + + +NIIDTPGHVDFT+EVER++RVLDGA++V C+VGGVQ QS TV RQ  +Y+VPR+AF+NK+DRMGA+  +V G  K   GA PV L
Sbjct:    4 KTPIERYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVH--DGA-ATMDWMEQEQERGITITSAATTCFWSGMAKQFEPHHVNIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLRVVGQLKSRLGANPVPL 169
[Close]
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_YERPA (Elongation factor G OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fusA PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.639e-48
Identity = 104/169 (61.54%), Postives = 127/169 (75.15%), Query Frame = 2 
Query:  188 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-------KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVFGSGKG*AGAPPVLL 673
            K  +ER RNIGISAHID+GKTT TERILFYTG  H+I EV   DG  A MD M+ E+E+GITI SAAT+C W       + + +NIIDTPGHVDFT+EVER++RVLDGA++V C+VGGVQ QS TV RQ  +Y+VPR+AF+NK+DRMGA+  +V G  K   GA PV L
Sbjct:    4 KTPIERYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVH--DGA-ATMDWMEQEQERGITITSAATTCFWSGMAKQFEPHHVNIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLRVVGQLKSRLGANPVPL 169
[Close]
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_YERP3 (Elongation factor G OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fusA PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.639e-48
Identity = 104/169 (61.54%), Postives = 127/169 (75.15%), Query Frame = 2 
Query:  188 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-------KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVFGSGKG*AGAPPVLL 673
            K  +ER RNIGISAHID+GKTT TERILFYTG  H+I EV   DG  A MD M+ E+E+GITI SAAT+C W       + + +NIIDTPGHVDFT+EVER++RVLDGA++V C+VGGVQ QS TV RQ  +Y+VPR+AF+NK+DRMGA+  +V G  K   GA PV L
Sbjct:    4 KTPIERYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVH--DGA-ATMDWMEQEQERGITITSAATTCFWSGMAKQFEPHHVNIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLRVVGQLKSRLGANPVPL 169
[Close]
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_THET2 (Elongation factor G OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=fusA PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.639e-48
Identity = 99/159 (62.26%), Postives = 125/159 (78.62%), Query Frame = 2 
Query:  197 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVFGSGKG*AGAPPVLL 673
            ++RLRNIGI+AHID+GKTT TERIL+YTGRIH+I EV   +G  A MD M+ ERE+GITI +A T+C WKD++INIIDTPGHVDFT+EVER++RVLDGAI+V  S  GV+ QS TV RQ  +Y VPR+AF NK+D+ GAD W V  + +   GA PV++
Sbjct:    9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH--EGA-ATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYHVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVM 164
[Close]
BLAST of FC925294 vs. ExPASy Swiss-Prot
Match: EFG_HELPS (Elongation factor G OS=Helicobacter pylori (strain Shi470) GN=fusA PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.141e-48
Identity = 100/160 (62.50%), Postives = 123/160 (76.88%), Query Frame = 2 
Query:  188 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVFGSGKG*AGAPPV 667
            K  + R+RNIGI+AHID+GKTT +ERILFYTG  H+I EV   DG  A MD M+ E+E+GITI SAAT+C WKD+QIN+IDTPGHVDFT+EVER++RVLDGA+ V CSVGGVQ QS TV RQ  +Y VPR+ F+NK+DR+GA+ + V    K    A PV
Sbjct:    4 KTPLNRIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVH--DGA-ATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYSVENQIKQRLKANPV 160
The following BLAST results are available for this feature:
BLAST of FC925294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFG_YERPS1.639e-4861.54Elongation factor G OS=Yersinia pseudotuberculosis... [more]
EFG_YERPP1.639e-4861.54Elongation factor G OS=Yersinia pestis (strain Pes... [more]
EFG_YERPN1.639e-4861.54Elongation factor G OS=Yersinia pestis bv. Antiqua... [more]
EFG_YERPG1.639e-4861.54Elongation factor G OS=Yersinia pestis bv. Antiqua... [more]
EFG_YERPE1.639e-4861.54Elongation factor G OS=Yersinia pestis GN=fusA PE=... [more]
EFG_YERPB1.639e-4861.54Elongation factor G OS=Yersinia pseudotuberculosis... [more]
EFG_YERPA1.639e-4861.54Elongation factor G OS=Yersinia pestis bv. Antiqua... [more]
EFG_YERP31.639e-4861.54Elongation factor G OS=Yersinia pseudotuberculosis... [more]
EFG_THET21.639e-4862.26Elongation factor G OS=Thermus thermophilus (strai... [more]
EFG_HELPS2.141e-4862.50Elongation factor G OS=Helicobacter pylori (strain... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP3YF17FM1 TF Citrus clementina cDNA clone KN0AAP3YF17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925294 ID=FC925294; Name=FC925294; organism=Citrus clementina; type=EST; length=679bp
ATTCCCACGATCTCCAGCACCACGTCTCCTCTACACTCTCTTCTCCTCTT
CGAGAACGACACCGACCAAATCCTCACCCCAATCTCCGTCTGCAGCCCTC
CTCCAAGGAAACTTCCACCTCCAATCGCGGCAGTTCTCGGCGGGAGGAAA
CCTCGCACGTGCGAAGGATGATAAGGAGCCATGGTGGAAGGAATCAATGG
AGCGGCTCCGAAATATCGGAATCTCGGCACATATCGATTCCGGAAAAACT
ACACTAACCGAGCGAATTCTGTTTTACACTGGACGGATTCACGAGATTCA
CGAGGTTCGAGGGCGAGACGGCGTCGGCGCCAAAATGGATTCTATGGATT
TGGAGCGTGAGAAAGGTATCACAATTCAGTCAGCCGCCACTAGCTGTGCT
TGGAAGGATTACCAGATTAATATAATTGACACTCCTGGACACGTAGACTT
CACAGTTGAAGTAGAAAGGGCTTTGCGAGTTCTTGATGGCGCAATTCTTG
TGCTTTGTAGTGTTGGTGGCGTGCAAAGTCAATCAATTACCGTTGACCGG
CAAATGAGGAGATACGAGGTGCCAAGACTGGCTTTCATTAACAAACTTGA
TAGAATGGGAGCTGATCCATGGAAAGTTTTTGGATCAGGCAAGGGCTAAG
CTGGCGCACCACCTGTGCTGCTGTGCAAG
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