FC925320

Overview
NameFC925320
Unique NameFC925320
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3793 contig Ccv1_Contig3793:2..411. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME32_ARATH (Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.232e-37
Identity = 69/132 (52.27%), Postives = 96/132 (72.73%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            +   GDG+  T ITGN +++DG  T  +AT ++ G  F+A++I F+N+AGPEKHQAVA+R D D+ +FY C+M GYQDTLY H+ RQ++R+C ITGT+DFIFGD +A FQ+C I  ++ L N    +TA GR
Sbjct:  265 IMMVGDGIDATVITGNRSFIDGWTTFRSATFAVSGRGFIARDITFQNTAGPEKHQAVAIRSDTDLGVFYRCAMRGYQDTLYAHSMRQFFRECIITGTVDFIFGDATAVFQSCQIKAKQGLPNQKNSITAQGR 396          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 1.232e-37
Identity = 73/133 (54.89%), Postives = 95/133 (71.43%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGRN 405
            + F GDG  KT ITG+ N VDG+ T H+ATV+ +GE F+A++I F+N+AGP KHQAVALRV +D S FY C M  YQDTLY H+ RQ++  C ITGT+DFIFG+ +A  Q+C I  R+P      +VTA GR+
Sbjct:  327 IMFLGDGRGKTIITGSRNVVDGSTTFHSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFGNAAAVLQDCDINARRPNSGQKNMVTAQGRS 459          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME40_ARATH (Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=PME40 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.609e-37
Identity = 69/132 (52.27%), Postives = 90/132 (68.18%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            + F GDG+ +T I  N +Y DG    H+ATV + G  F+AK++ F N AGPEKHQAVALR  +D+S +Y CS + YQDT+Y H+ +Q+YR+C I GT+DFIFGD S  FQNC +  R+P  N   I TA GR
Sbjct:  258 IMFIGDGIGRTVIKANRSYADGWTAFHSATVGVRGSGFIAKDLSFVNYAGPEKHQAVALRSSSDLSAYYRCSFESYQDTIYVHSHKQFYRECDIYGTVDFIFGDASVVFQNCSLYARRPNPNQKIIYTAQGR 389          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME41_ARATH (Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 2.745e-37
Identity = 69/132 (52.27%), Postives = 95/132 (71.97%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            +   GDG+ +T +TGN N VDG  T ++AT ++    F+A N+ F N+AGPEKHQAVA+R  AD+SIFY+CS + YQDTLYTH+ RQ+YR+C I GT+DFIFG+ +  FQ+C +  R+P+ N    +TA GR
Sbjct:  312 LMMIGDGINRTVVTGNRNVVDGWTTFNSATFAVTSPNFVAVNMTFRNTAGPEKHQAVAMRSSADLSIFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQDCNLYPRQPMQNQFNAITAQGR 443          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME6_ARATH (Probable pectinesterase/pectinesterase inhibitor 6 OS=Arabidopsis thaliana GN=PME6 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.585e-37
Identity = 72/132 (54.55%), Postives = 89/132 (67.42%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            V   GDG+  T +TGN N  DGT T  +AT ++ G  F+A+ I FEN+AGPEKHQAVALR  +D S+FY CS  GYQDTLY H+ RQ+ R+C I GT+DFIFGD +A  QNC I  RKP+      +TA  R
Sbjct:  303 VMVIGDGIDSTIVTGNRNVQDGTTTFRSATFAVSGNGFIAQGITFENTAGPEKHQAVALRSSSDFSVFYACSFKGYQDTLYLHSSRQFLRNCNIYGTVDFIFGDATAILQNCNIYARKPMSGQKNTITAQSR 434          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME22_SOLLC (Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2.2 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.585e-37
Identity = 71/133 (53.38%), Postives = 96/133 (72.18%), Query Frame = 1
Query:    4 RVFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            ++   GDGM+ T ITGNLN VDG+ T H+AT++ +G+ F+ ++I  +N+AGP KHQAVALRV AD S+   C +D YQDTLY H++RQ+YRD  +TGTIDFIFG+ +  FQ C ++ RKP      +VTA GR
Sbjct:  287 KLMIVGDGMHATIITGNLNVVDGSTTFHSATLAAVGKGFILQDICIQNTAGPAKHQAVALRVGADKSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTIDFIFGNAAVVFQKCKLVARKPGKYQQNMVTAQGR 419          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME22_ARATH (Putative pectinesterase/pectinesterase inhibitor 22 OS=Arabidopsis thaliana GN=PME22 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.585e-37
Identity = 73/132 (55.30%), Postives = 93/132 (70.45%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            +   GDG+ +T ITG+ N++ G  T  TATV++ G  F+AK+I F N+AGP+  QAVALRVD+D S FY CS++GYQDTLY H+ RQ+YRDC I GTIDFIFG+ +A  QNC I  R PL      +TA GR
Sbjct:  291 IMLVGDGIGQTIITGDRNFMQGLTTFRTATVAVSGRGFIAKDITFRNTAGPQNRQAVALRVDSDQSAFYRCSVEGYQDTLYAHSLRQFYRDCEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGR 422          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME21_SOLLC (Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 4.682e-37
Identity = 71/132 (53.79%), Postives = 95/132 (71.97%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            +   GDGMY T ITG+LN VDG+ T H+AT++ +G+ F+ ++I  +N+AGP KHQAVALRV AD S+   C +D YQDTLY H++RQ+YRD  +TGTIDFIFG+ +  FQ C ++ RKP      +VTA GR
Sbjct:  288 LMIIGDGMYATIITGSLNVVDGSTTFHSATLAAVGKGFILQDICIQNTAGPAKHQAVALRVGADKSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTIDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGR 419          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 6.115e-37
Identity = 71/132 (53.79%), Postives = 93/132 (70.45%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            + F GDG  +T ITG+ N VDG+ T H+ATV+ +GE F+A++I F+N+AGP KHQAVALRV +D S FYNC M  YQDTLY H+ RQ++  C I GT+DFIFG+ +   Q+C I  R+P      +VTA GR
Sbjct:  332 IMFMGDGRTRTIITGSRNVVDGSTTFHSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYNCDMLAYQDTLYVHSNRQFFVKCLIAGTVDFIFGNAAVVLQDCDIHARRPNSGQKNMVTAQGR 463          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME_ACTDE (Pectinesterase OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.324e-36
Identity = 72/133 (54.14%), Postives = 91/133 (68.42%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGRN 405
            + F GDG+ KT I GN + VDG  T  ++TV+++G  F+A+ I FEN AGP KHQAVALR  AD S FY CS  GYQDTLY H+ RQ+Y +C + GTIDFIFG+ +A  Q C +  RKP +N   I TA GR+
Sbjct:   60 LMFIGDGIGKTWIKGNRSVVDGWTTFRSSTVAVVGTGFIARGISFENYAGPSKHQAVALRSGADFSAFYQCSFVGYQDTLYVHSLRQFYSECDVYGTIDFIFGNAAAVLQKCNLYARKPNENQKNIFTAQGRD 192          
The following BLAST results are available for this feature:
BLAST of FC925320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
PME32_ARATH1.232e-3752.27Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME2_ARATH1.232e-3754.89Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME40_ARATH1.609e-3752.27Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME41_ARATH2.745e-3752.27Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME6_ARATH3.585e-3754.55Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME22_SOLLC3.585e-3753.38Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2... [more]
PME22_ARATH3.585e-3755.30Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME21_SOLLC4.682e-3753.79Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2... [more]
PME3_ARATH6.115e-3753.79Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME_ACTDE2.324e-3654.14Pectinesterase OS=Actinidia deliciosa PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH13FM1 TF Citrus clementina cDNA clone KN0AAP8YH13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925320 ID=FC925320; Name=FC925320; organism=Citrus clementina; type=EST; length=410bp
GCTCGTGTGTTTTTTTTTGGTGATGGCATGTACAAGACCAGAATCACAGG
AAATTTGAACTATGTCGATGGCACACCCACGATGCATACCGCCACAGTCA
GTATTCTTGGAGAATTCTTCATGGCTAAGAACATTGGCTTTGAGAACTCA
GCAGGACCAGAGAAACATCAAGCAGTAGCCCTAAGGGTGGATGCCGATAT
GTCAATCTTCTACAACTGTTCAATGGACGGCTACCAAGACACACTCTACA
CCCACGCCAAGCGCCAGTACTACCGAGACTGCACCATCACCGGCACAATC
GACTTCATCTTCGGCGACTGCTCTGCCTTCTTTCAAAACTGCATAATCAT
CGTCCGAAAACCCCTAGACAACCATCATTGCATTGTCACTGCCCATGGCC
GCAATGTTTA
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