FC925320

Overview
NameFC925320
Unique NameFC925320
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3793 contig Ccv1_Contig3793:2..411. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME45_ARATH (Putative pectinesterase/pectinesterase inhibitor 45 OS=Arabidopsis thaliana GN=PME45 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.324e-36
Identity = 73/132 (55.30%), Postives = 88/132 (66.67%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            V   GDG  KT +TGN ++     T  TAT    GE FMA+++GF N+AGPE HQAVA+RV +D S+F NC  +GYQDTLY +  RQYYR C I GT+DFIFGD +A FQNC I +RK L      VTA GR
Sbjct:  347 VTMVGDGSQKTIVTGNKSHAKKIRTFLTATFVAQGEGFMAQSMGFRNTAGPEGHQAVAIRVQSDRSVFLNCRFEGYQDTLYAYTHRQYYRSCVIIGTVDFIFGDAAAIFQNCDIFIRKGLPGQKNTVTAQGR 478          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME1_SOLLC (Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5)

HSP 1 Score: 149.058 bits (375), Expect = 6.761e-36
Identity = 69/128 (53.91%), Postives = 93/128 (72.66%), Query Frame = 1
Query:   19 GDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            GDGMY T ITG+LN VDG+ T  +AT++ +G+ F+ ++I  +N+AGP K QAVALRV ADMS+   C +D YQDTLY H++RQ+YRD  +TGT+DFIFG+ +  FQ C ++ RKP      +VTA GR
Sbjct:  288 GDGMYATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGR 415          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME13_ARATH (Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana GN=PME13 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.761e-36
Identity = 74/134 (55.22%), Postives = 88/134 (65.67%), Query Frame = 1
Query:    1 ARVFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            A +   GDG  KT +TGN ++     T  TAT    GE FMA+++GF N+AG E HQAVA+RV +D SIF NC  +GYQDTLY +  RQYYR C I GTIDFIFGD +A FQNC I +RK L      VTA GR
Sbjct:  350 ANLTMVGDGSQKTIVTGNKSHAKKIRTFLTATFVAQGEGFMAQSMGFRNTAGSEGHQAVAIRVQSDRSIFLNCRFEGYQDTLYAYTHRQYYRSCVIVGTIDFIFGDAAAIFQNCNIFIRKGLPGQKNTVTAQGR 483          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME18_ARATH (Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 8.831e-36
Identity = 71/128 (55.47%), Postives = 91/128 (71.09%), Query Frame = 1
Query:   19 GDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            GDG   T ITG+LN +DG+ T  +ATV+  G+ FMA++I F+N+AGP KHQAVALRV AD ++   C +D YQDTLYTH  RQ+YRD  ITGT+DFIFG+ +  FQNC I+ R P      ++TA GR
Sbjct:  301 GDGKDATIITGSLNVIDGSTTFRSATVAANGDGFMAQDIWFQNTAGPAKHQAVALRVSADQTVINRCRIDAYQDTLYTHTLRQFYRDSYITGTVDFIFGNSAVVFQNCDIVARNPGAGQKNMLTAQGR 428          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME59_ARATH (Probable pectinesterase/pectinesterase inhibitor 59 OS=Arabidopsis thaliana GN=PME59 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.967e-35
Identity = 70/132 (53.03%), Postives = 92/132 (69.70%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            +   GDGM  T ITG  +   G  T ++AT  I G  F+AK I F N+AGP K QAVALR  +D+SIFY CS++GYQDTL  H++RQ+YR+C I GT+DFIFG+ +A FQNC+I+ R+PL     ++TA GR
Sbjct:  274 IMLVGDGMRSTIITGGRSVQGGYTTYNSATAGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHSQRQFYRECYIYGTVDFIFGNAAAVFQNCLILPRRPLKGQANVITAQGR 405          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME60_ARATH (Probable pectinesterase/pectinesterase inhibitor 60 OS=Arabidopsis thaliana GN=PME60 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.763e-35
Identity = 70/132 (53.03%), Postives = 90/132 (68.18%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            +   GDGM  T ITG  +   G  T  +AT  I G  F+AK I F+N+AGP K QAVALR  +D+SIFY CS++GYQDTL  H++RQ+YR+C I GT+DFIFG+ +  FQNCII+ R PL     ++TA GR
Sbjct:  278 IMLVGDGMRYTIITGGRSVKGGYTTYSSATAGIEGLHFIAKGIAFQNTAGPAKGQAVALRSSSDLSIFYRCSIEGYQDTLMVHSQRQFYRECYIYGTVDFIFGNAAVVFQNCIILPRLPLKGQANVITAQGR 409          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME2_CITSI (Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.763e-35
Identity = 68/132 (51.52%), Postives = 93/132 (70.45%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            + F GDG+ KT ITG+ +   G  T  +ATV+++G+ F+A++I   N+AGP  HQAVALR  +D+S+FY CS +GYQDTLY H++RQ+YR+C I GT+DFIFG+ +   QNC I  RKP  N    +TA GR
Sbjct:  251 IMFVGDGIGKTIITGSKSVGGGATTFKSATVAVVGDNFIARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGR 381          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME1_FICAW (Pectinesterase/pectinesterase inhibitor OS=Ficus awkeotsang PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.175e-34
Identity = 69/132 (52.27%), Postives = 93/132 (70.45%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            V   G+GM  T ITG+ N VDG+ T  +ATV+ +G+ F+A++I F+N+AGPEK+QAVALR+ AD ++   C +D YQDTLY H  RQ+YRD  ITGT+DFIFG+ +  FQNC +I RK +      +TA GR
Sbjct:  283 VMLVGEGMDYTIITGSRNVVDGSTTFDSATVAAVGDGFIAQDICFQNTAGPEKYQAVALRIGADETVINRCRIDAYQDTLYPHNYRQFYRDRNITGTVDFIFGNAAVVFQNCNLIPRKQMKGQENTITAQGR 414          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME12_ARATH (Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.841e-34
Identity = 67/133 (50.38%), Postives = 91/133 (68.42%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGRN 405
            +   GDG   T ITGN +  DG  T  +AT+++ GE F+A++I   N+AGPEKHQAVALRV+AD    Y C +DGYQDTLYTH+ RQ+YR+C I GTID+IFG+ +  FQ C I+ + P+     ++TA  R+
Sbjct:  288 IVLIGDGSDVTFITGNRSVGDGWTTFRSATLAVSGEGFLARDIMITNTAGPEKHQAVALRVNADFVALYRCVIDGYQDTLYTHSFRQFYRECDIYGTIDYIFGNAAVVFQGCNIVSKLPMPGQFTVITAQSRD 420          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME16_ARATH (Probable pectinesterase/pectinesterase inhibitor 16 OS=Arabidopsis thaliana GN=PME16 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.710e-34
Identity = 70/133 (52.63%), Postives = 93/133 (69.92%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGRN 405
            V   GDG  KT I G+ +   G  T  TATV+ +GE F+A+++ F N+AGP+  QAVALRV AD S+ + CS++GYQD+LYTH+KRQ+YR+  ITGT+DFIFG+ +  FQ+C I  RKPL      VTA GR+
Sbjct:  265 VMLVGDGKGKTVIVGSRSNRGGWTTYKTATVAAMGEGFIARDMTFVNNAGPKSEQAVALRVGADKSVVHRCSVEGYQDSLYTHSKRQFYRETDITGTVDFIFGNSAVVFQSCNIAARKPLPGQRNFVTAQGRS 397          
The following BLAST results are available for this feature:
BLAST of FC925320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
PME45_ARATH2.324e-3655.30Putative pectinesterase/pectinesterase inhibitor 4... [more]
PME1_SOLLC6.761e-3653.91Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9... [more]
PME13_ARATH6.761e-3655.22Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME18_ARATH8.831e-3655.47Pectinesterase/pectinesterase inhibitor 18 OS=Arab... [more]
PME59_ARATH1.967e-3553.03Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME60_ARATH9.763e-3553.03Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME2_CITSI9.763e-3551.52Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE... [more]
PME1_FICAW2.175e-3452.27Pectinesterase/pectinesterase inhibitor OS=Ficus a... [more]
PME12_ARATH2.841e-3450.38Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME16_ARATH3.710e-3452.63Probable pectinesterase/pectinesterase inhibitor 1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH13FM1 TF Citrus clementina cDNA clone KN0AAP8YH13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925320 ID=FC925320; Name=FC925320; organism=Citrus clementina; type=EST; length=410bp
GCTCGTGTGTTTTTTTTTGGTGATGGCATGTACAAGACCAGAATCACAGG
AAATTTGAACTATGTCGATGGCACACCCACGATGCATACCGCCACAGTCA
GTATTCTTGGAGAATTCTTCATGGCTAAGAACATTGGCTTTGAGAACTCA
GCAGGACCAGAGAAACATCAAGCAGTAGCCCTAAGGGTGGATGCCGATAT
GTCAATCTTCTACAACTGTTCAATGGACGGCTACCAAGACACACTCTACA
CCCACGCCAAGCGCCAGTACTACCGAGACTGCACCATCACCGGCACAATC
GACTTCATCTTCGGCGACTGCTCTGCCTTCTTTCAAAACTGCATAATCAT
CGTCCGAAAACCCCTAGACAACCATCATTGCATTGTCACTGCCCATGGCC
GCAATGTTTA
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