FC925320

Overview
NameFC925320
Unique NameFC925320
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3793 contig Ccv1_Contig3793:2..411. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.553e-31
Identity = 64/132 (48.48%), Postives = 86/132 (65.15%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            + F GDG   T IT + N  DG+ T H+ATV  +    +A++I F+N+AG  KHQAVAL V +D+S FY C M  YQDTLY H+ RQ++  C + GT+DFIFG+ +A FQ+C I  R+P      +VTA GR
Sbjct:  323 IMFMGDGKSNTIITASRNVQDGSTTFHSATVVRVAGKVLARDITFQNTAGASKHQAVALCVGSDLSAFYRCDMLAYQDTLYVHSNRQFFVQCLVAGTVDFIFGNGAAVFQDCDIHARRPGSGQKNMVTAQGR 454          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME4_ARATH (Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.553e-31
Identity = 65/136 (47.79%), Postives = 89/136 (65.44%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYV--DGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGRNV 408
            +F FGDG  KT I+ N +     GT T  +ATV +  E FMAK +GF+N+AGP  HQA A+RV+ D ++ +NC  DGYQDTLY +  RQ+YR+C ++GT+DFIFG  +   QN +I+VRK     +  VTA G  +
Sbjct:  327 IFMFGDGARKTVISYNRSVALSRGTTTSLSATVQVESEGFMAKWMGFKNTAGPMGHQAAAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNCVVSGTVDFIFGKSATVIQNTLIVVRKGSKGQYNTVTADGNEL 462          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME35_ARATH (Probable pectinesterase/pectinesterase inhibitor 35 OS=Arabidopsis thaliana GN=PME35 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.553e-31
Identity = 67/133 (50.38%), Postives = 92/133 (69.17%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGRN 405
            V   GDG  KT I G+ +   G  T  +ATV+ +G+ F+A++I F NSAGP   QAVALRV +D S+ Y CS+DGYQD+LYT +KRQ+YR+  ITGT+DFIFG+ +  FQ+C ++ RK   + +  VTA GR+
Sbjct:  278 VMLVGDGKGKTVIVGSRSNRGGWNTYQSATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDRSVVYRCSIDGYQDSLYTLSKRQFYRETDITGTVDFIFGNSAVVFQSCNLVSRKGSSDQN-YVTAQGRS 409          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME38_ARATH (Putative pectinesterase/pectinesterase inhibitor 38 OS=Arabidopsis thaliana GN=PME38 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.459e-30
Identity = 65/132 (49.24%), Postives = 88/132 (66.67%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            +   GDG+ KT ITG+ +   G  T  +AT    G+ F+ ++I   N+AGPE HQAVALR ++DMS+FY CS++GYQDTLY H+ RQ++R+C I GT+DFIFG+ +A  QNC I  R P  N    +TA  R
Sbjct:  217 IMITGDGIGKTIITGDKSKGRGFSTYKSATFVAEGDGFVGRDITIRNTAGPENHQAVALRSNSDMSVFYRCSIEGYQDTLYVHSGRQFFRECDIYGTVDFIFGNAAAVLQNCRIFARNP-PNGVNTITAQSR 347          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME64_ARATH (Probable pectinesterase/pectinesterase inhibitor 64 OS=Arabidopsis thaliana GN=PME64 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 7.241e-30
Identity = 66/138 (47.83%), Postives = 89/138 (64.49%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGNLNYVD-GTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIV-----RKPLDNHHCIVTAHGR 402
            V F GDGM KT ITG+LN    G  T  +ATV +LG+ FMA+++  EN+AG + HQAVA R D+D S+  NC   G QDTLY H+ RQ+Y+ C I G +DFIFG+ +A FQ+C I++     +      +  +TAHGR
Sbjct:  342 VVFIGDGMGKTVITGSLNVGQPGMTTFESATVGVLGDGFMARDLTIENTAGADAHQAVAFRSDSDFSVLENCEFLGNQDTLYAHSLRQFYKQCRIQGNVDFIFGNSAAVFQDCDILIASKHSKLEQGGANNAITAHGR 479          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME5_ARATH (Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.613e-29
Identity = 65/133 (48.87%), Postives = 86/133 (64.66%), Query Frame = 1
Query:    7 VFFFGDGMYKTRITGN--LNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHG 399
            +F FGDG  KT I+ N  +    GT T  + TV +  E FMAK IGF+N+AGP  HQAVA+RV+ D ++ +NC  DGYQDTLY +  RQ+YR+  ++GT+DFIFG  +   QN +I+VRK        VTA G
Sbjct:  334 IFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLIVVRKGNKGQFNTVTADG 466          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME37_ARATH (Probable pectinesterase/pectinesterase inhibitor VGDH2 OS=Arabidopsis thaliana GN=VGDH2 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 3.594e-29
Identity = 65/133 (48.87%), Postives = 86/133 (64.66%), Query Frame = 1
Query:    7 VFFFGDGMYKTRIT--GNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHG 399
            +F FGDG  +T IT   ++    GT T  + TV +  E FMAK IGF+N+AGP  HQAVALRV+ D ++ +NC  DGYQDTLY +  RQ+YR+  ++GT+DFIFG  +   QN +I+VRK        VTA G
Sbjct:  327 IFMFGDGATQTIITFDRSVKLSPGTTTSLSGTVQVESEGFMAKWIGFKNTAGPLGHQAVALRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLILVRKGSPGQSNYVTADG 459          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME54_ARATH (Probable pectinesterase/pectinesterase inhibitor 54 OS=Arabidopsis thaliana GN=PME54 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.693e-29
Identity = 61/129 (47.29%), Postives = 88/129 (68.22%), Query Frame = 1
Query:   19 GDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLD-NHHCIVTAHGR 402
            G+G   T I G+ +   GT    TAT+++ G+ F+A++IG +N AGP  HQA+AL + +D S+ Y CS+ GYQDTLY  A RQ+YR+C I GTIDFIFG+ +A FQ+C I +R+P     + ++ A+GR
Sbjct:  252 GNGKDLTVIVGDDSATGGTSVPDTATMTVTGDGFIARDIGIKNIAGPRGHQAIALSITSDQSVLYRCSISGYQDTLYAAALRQFYRECDIYGTIDFIFGNAAAVFQSCNIFLRRPHGVKAYNVILANGR 380          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME30_ARATH (Probable pectinesterase 30 OS=Arabidopsis thaliana GN=PME30 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.693e-29
Identity = 63/128 (49.22%), Postives = 83/128 (64.84%), Query Frame = 1
Query:   19 GDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            GDG   T ITGNL+  +   T +TATV+  G  F+  ++ F N+AGP K  AVALRV  DMS+ Y C ++GYQD LY H+ RQ+YR+C ITGT+DFI G+  A FQ C I+ R+P      ++TA  R
Sbjct:  243 GDGQDLTIITGNLSASNVRRTYNTATVASNGNGFIGVDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRVEGYQDALYPHSDRQFYRECFITGTVDFICGNAVAVFQFCQIVARQPKMGQSNVITAQSR 370          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME19_ARATH (Probable pectinesterase/pectinesterase inhibitor 19 OS=Arabidopsis thaliana GN=PME19 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.783e-28
Identity = 62/128 (48.44%), Postives = 82/128 (64.06%), Query Frame = 1
Query:   19 GDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            GDG   T IT NL+  +   T +TATV+  G  F+  ++ F N+AGP K  AVALRV  DMS+ Y C ++GYQD LY H+ RQ+YR+C ITGT+DFI G+  A FQ C I+ R+P      ++TA  R
Sbjct:  270 GDGQDLTIITSNLSASNVRRTFNTATVASNGNGFIGVDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRVEGYQDALYPHSDRQFYRECFITGTVDFICGNAVAVFQFCQIVARQPKMGQSNVITAQSR 397          
The following BLAST results are available for this feature:
BLAST of FC925320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
PMEU1_SOLLC8.553e-3148.48Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME4_ARATH8.553e-3147.79Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 P... [more]
PME35_ARATH8.553e-3150.38Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME38_ARATH1.459e-3049.24Putative pectinesterase/pectinesterase inhibitor 3... [more]
PME64_ARATH7.241e-3047.83Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME5_ARATH1.613e-2948.87Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 P... [more]
PME37_ARATH3.594e-2948.87Probable pectinesterase/pectinesterase inhibitor V... [more]
PME54_ARATH4.693e-2947.29Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME30_ARATH4.693e-2949.22Probable pectinesterase 30 OS=Arabidopsis thaliana... [more]
PME19_ARATH1.783e-2848.44Probable pectinesterase/pectinesterase inhibitor 1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH13FM1 TF Citrus clementina cDNA clone KN0AAP8YH13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925320 ID=FC925320; Name=FC925320; organism=Citrus clementina; type=EST; length=410bp
GCTCGTGTGTTTTTTTTTGGTGATGGCATGTACAAGACCAGAATCACAGG
AAATTTGAACTATGTCGATGGCACACCCACGATGCATACCGCCACAGTCA
GTATTCTTGGAGAATTCTTCATGGCTAAGAACATTGGCTTTGAGAACTCA
GCAGGACCAGAGAAACATCAAGCAGTAGCCCTAAGGGTGGATGCCGATAT
GTCAATCTTCTACAACTGTTCAATGGACGGCTACCAAGACACACTCTACA
CCCACGCCAAGCGCCAGTACTACCGAGACTGCACCATCACCGGCACAATC
GACTTCATCTTCGGCGACTGCTCTGCCTTCTTTCAAAACTGCATAATCAT
CGTCCGAAAACCCCTAGACAACCATCATTGCATTGTCACTGCCCATGGCC
GCAATGTTTA
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