FC925320

Overview
NameFC925320
Unique NameFC925320
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3793 contig Ccv1_Contig3793:2..411. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME42_ARATH (Probable pectinesterase/pectinesterase inhibitor 42 OS=Arabidopsis thaliana GN=PME42 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.042e-28
Identity = 61/128 (47.66%), Postives = 81/128 (63.28%), Query Frame = 1
Query:   19 GDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            GDG   T ITGNL+  +   T +TAT +  G+ F+  ++ F N+ GP K  AVALRV  DMS+ Y C ++GYQD LY H  RQ+YR+C ITGT+DFI G+ +A FQ C I+ R+P       +TA  R
Sbjct:  270 GDGQDSTIITGNLSASNVRRTFYTATFASNGKGFIGVDMCFRNTVGPAKGPAVALRVSGDMSVIYRCRVEGYQDALYPHIDRQFYRECFITGTVDFICGNAAAVFQFCQIVARQPNMGQSNFITAQSR 397          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME_BRANA (Probable pectinesterase/pectinesterase inhibitor OS=Brassica napus GN=BP19 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.189e-28
Identity = 64/133 (48.12%), Postives = 84/133 (63.16%), Query Frame = 1
Query:    7 VFFFGDGMYKTRIT--GNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHG 399
            VF FGDG  +T IT   ++    GT T  + TV +  E FMAK IGF+N+AGP  HQAVA RV+ D ++ +NC  DGYQDTLY +  RQ+YR+  ++GT+DFIFG  +   QN +I+ RK        VTA G
Sbjct:  323 VFMFGDGATQTIITFDRSVGLSPGTTTSLSGTVQVESEGFMAKWIGFQNTAGPLGHQAVAFRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLILCRKGSPGQTNHVTADG 455          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME_BRACM (Pectinesterase/pectinesterase inhibitor (Fragment) OS=Brassica campestris PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.180e-26
Identity = 62/134 (46.27%), Postives = 84/134 (62.69%), Query Frame = 1
Query:    7 VFFFGDGMYKTRIT--GNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            VF FGDG  +T IT   ++    GT T  + TV +  E FMAK IGF+N+AGP  +QAVA RV+ D ++ +NC  DGYQDTLY +  RQ+YR+  ++GT+DFI G  +   QN +I+ RK        VTA G+
Sbjct:  310 VFMFGDGATQTIITFDRSVGLSPGTTTSLSGTVQVESEGFMAKWIGFQNTAGPLGNQAVAFRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFINGKSATVIQNSLILCRKGSPGQTNHVTADGK 443          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME31_ARATH (Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.369e-20
Identity = 49/95 (51.58%), Postives = 63/95 (66.32%), Query Frame = 1
Query:   64 VDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCII 348
            V GT T    +V + GE F+A+NI FENSA     QAVA+RV AD   FYNC   G+QDTLY H  +QY +DC I G++DFIFG+ +A  ++C I
Sbjct:   86 VIGTGTFGCGSVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHHGKQYLKDCYIEGSVDFIFGNSTALLEHCHI 180          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME57_ARATH (Putative pectinesterase 57 OS=Arabidopsis thaliana GN=PME57 PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.854e-18
Identity = 47/110 (42.73%), Postives = 65/110 (59.09%), Query Frame = 1
Query:   22 DGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSAGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIII 351
            DG   T IT NL+  +   T +TAT +  G+ F+  ++ F N+  P K   V LRV+ DMSI Y C ++ YQD LY H  RQ YR+  +  T+DFI G+ +A FQ C I+
Sbjct:  133 DGQDSTIITFNLSSSNSKRTFNTATFASNGDGFIRVDMCFRNTTWPVKGPVVTLRVNGDMSIIYRCRVEEYQDALYPHKNRQCYREYFLMDTVDFICGNAAAVFQFCQIV 242          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME53_ARATH (Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.854e-18
Identity = 55/140 (39.29%), Postives = 77/140 (55.00%), Query Frame = 1
Query:   19 GDGMYKTRI----TGNLNYVDGTP--TMHTATVSILGEFFMAKNIGFENSA-----GPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGRN 405
            G+G  KT +    T       G P  T ++A+ ++   FF+AKNI F N+      G    QAVALRV AD + F+ C M G QDTLY H  R YY+DC I G++DFIFG+  + ++ C +     + +    VTA GR+
Sbjct:  140 GEGAEKTTVEWGDTAQTPDSKGNPMGTYNSASFAVNSPFFVAKNITFRNTTPVPLPGAVGKQAVALRVSADNAAFFGCRMLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLYEGCHV---HAIADKLGAVTAQGRS 276          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME8_ARATH (Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.850e-17
Identity = 49/116 (42.24%), Postives = 62/116 (53.45%), Query Frame = 1
Query:   19 GDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSA-----GPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIII 351
            G G   T I  N        T + ATV + G  F+AKNI F N A     G    QAVA+R+  D S F  C   G QDTL+    R Y++DC I G+IDFIFG+  + +Q+C II
Sbjct:  145 GQGFDITAIAWNDTAYSANGTFYCATVQVFGSQFVAKNISFMNVAPIPKPGDVGAQAVAIRIAGDESAFVGCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNAKSLYQDCRII 260          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME14_ARATH (Putative pectinesterase 14 OS=Arabidopsis thaliana GN=PME14 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.857e-15
Identity = 48/134 (35.82%), Postives = 71/134 (52.99%), Query Frame = 1
Query:   19 GDGMYKTRITGNLNYVDGTPTMHTATVSILGEFFMAKNIGFENSA-----GPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGRN 405
            G G  +T I  N        T  + +V++ GE F A NI F+N+A     G    QAVAL+V  D + FY C   G QDTL     R +++ C I G+IDFIFG+  + +++C +      +   CI TA+G++
Sbjct:   96 GMGYSRTSIEWNNTTASSNGTFSSFSVAVFGEKFTAYNISFKNTAPAPNPGAVDAQAVALKVVGDKAAFYGCGFYGNQDTLLDQEGRHFFKGCFIEGSIDFIFGNGRSLYEDCTLHSIAKENTIGCI-TANGKD 228          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME68_ARATH (Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.579e-15
Identity = 42/113 (37.17%), Postives = 64/113 (56.64%), Query Frame = 1
Query:   79 TMHTATVSILGEFFMAKNIGFENSA-----GPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCIIIVRKPLDNHHCIVTAHGR 402
            T  TA+V++   +F A+NI F N+A     G +  QAVA R+  D + F  C   G QDTL   A R Y+++C I G+IDFIFG+  + +++C +     + +    + AHGR
Sbjct:  141 TYQTASVTVYANYFTARNISFTNTAPAPLPGMQGWQAVAFRISGDKAFFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCEL---HSIASRFGSIAAHGR 250          
BLAST of FC925320 vs. ExPASy Swiss-Prot
Match: PME62_ARATH (Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.914e-14
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 1
Query:   79 TMHTATVSILGEFFMAKNIGFENS----AGPEKHQAVALRVDADMSIFYNCSMDGYQDTLYTHAKRQYYRDCTITGTIDFIFGDCSAFFQNCII 348
            T  TA+VSI  +FF A  I FEN+    AG +  QAVALR+  D ++FY   + G QDTL+      Y+  C I G +DFIFG+  + +Q+C I
Sbjct:  164 TYRTASVSIESDFFCATAITFENTVVAEAGEQGRQAVALRIIGDKAVFYRVRVLGSQDTLFDDNGSHYFYQCYIQGNVDFIFGNAKSLYQDCDI 257          
The following BLAST results are available for this feature:
BLAST of FC925320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
PME42_ARATH3.042e-2847.66Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME_BRANA5.189e-2848.12Probable pectinesterase/pectinesterase inhibitor O... [more]
PME_BRACM2.180e-2646.27Pectinesterase/pectinesterase inhibitor (Fragment)... [more]
PME31_ARATH1.369e-2051.58Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31... [more]
PME57_ARATH2.854e-1842.73Putative pectinesterase 57 OS=Arabidopsis thaliana... [more]
PME53_ARATH2.854e-1839.29Probable pectinesterase 53 OS=Arabidopsis thaliana... [more]
PME8_ARATH1.850e-1742.24Probable pectinesterase 8 OS=Arabidopsis thaliana ... [more]
PME14_ARATH3.857e-1535.82Putative pectinesterase 14 OS=Arabidopsis thaliana... [more]
PME68_ARATH6.579e-1537.17Probable pectinesterase 68 OS=Arabidopsis thaliana... [more]
PME62_ARATH1.914e-1443.62Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH13FM1 TF Citrus clementina cDNA clone KN0AAP8YH13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925320 ID=FC925320; Name=FC925320; organism=Citrus clementina; type=EST; length=410bp
GCTCGTGTGTTTTTTTTTGGTGATGGCATGTACAAGACCAGAATCACAGG
AAATTTGAACTATGTCGATGGCACACCCACGATGCATACCGCCACAGTCA
GTATTCTTGGAGAATTCTTCATGGCTAAGAACATTGGCTTTGAGAACTCA
GCAGGACCAGAGAAACATCAAGCAGTAGCCCTAAGGGTGGATGCCGATAT
GTCAATCTTCTACAACTGTTCAATGGACGGCTACCAAGACACACTCTACA
CCCACGCCAAGCGCCAGTACTACCGAGACTGCACCATCACCGGCACAATC
GACTTCATCTTCGGCGACTGCTCTGCCTTCTTTCAAAACTGCATAATCAT
CGTCCGAAAACCCCTAGACAACCATCATTGCATTGTCACTGCCCATGGCC
GCAATGTTTA
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