FC925328

Overview
NameFC925328
Unique NameFC925328
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length528
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL37A_OSTOS (60S ribosomal protein L37a OS=Ostertagia ostertagi GN=rpl-37a PE=3 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 1.561e-30
Identity = 61/91 (67.03%), Postives = 70/91 (76.92%), Query Frame = 3
Query:   78 MTKTTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 350
            M K TKK GIVGKYGTRYGASLRK +KKME++QHS+Y C FCGK A++R AVGIW C  C K  AGGAY   T +A TVRST+RRLR+  E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKMEITQHSRYTCPFCGKDAMRRGAVGIWNCSKCKKTVAGGAYVYGTVAAATVRSTVRRLRDLKE 91          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL43_YEAST (60S ribosomal protein L43 OS=Saccharomyces cerevisiae GN=RPL43A PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 2.663e-30
Identity = 60/92 (65.22%), Postives = 71/92 (77.17%), Query Frame = 3
Query:   78 MTKTTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 353
            M K TKK GI GKYG RYG+SLR+Q+KK+E+ QH++Y C FCGK  VKR A GIW C  C K  AGGAYT++TA+A TVRSTIRRLRE  E+
Sbjct:    1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAAATVRSTIRRLREMVEA 92          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL43_CANGA (60S ribosomal protein L43 OS=Candida glabrata GN=RPL43 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.479e-30
Identity = 59/92 (64.13%), Postives = 71/92 (77.17%), Query Frame = 3
Query:   78 MTKTTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 353
            M K TKK GI GKYG RYG+SLR+Q+KK+EV QH++Y C FCGK  V+R A GIW C  C K  AGGAYT++TA+A TVRSTIRRLR+  E+
Sbjct:    1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKTVRRGAAGIWSCHSCKKTVAGGAYTVSTAAAATVRSTIRRLRDMVEA 92          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL37A_SCHMA (60S ribosomal protein L37a (Fragment) OS=Schistosoma mansoni PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.934e-30
Identity = 61/90 (67.78%), Postives = 71/90 (78.89%), Query Frame = 3
Query:   84 KTTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 353
            K TKK GIVGKYG RYGASLRK IKK+E+SQH+KY C FCGK ++KRKA GIW CK C KV AGGAY  +T +A T+R+ IRRLR+  ES
Sbjct:    2 KRTKKVGIVGKYGVRYGASLRKTIKKIEISQHAKYNCNFCGKDSLKRKAAGIWECKACKKVVAGGAYVCSTTAATTIRAAIRRLRDAHES 91          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL37A_DROME (60S ribosomal protein L37a OS=Drosophila melanogaster GN=RpL37A PE=1 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.012e-29
Identity = 59/91 (64.84%), Postives = 70/91 (76.92%), Query Frame = 3
Query:   78 MTKTTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 350
            M K TKK GIVGKYGTRYGASLRK +KKME++QHSKY C FCGK ++KR  VGIW CK C +  AGGA+  +T +A +VRS +RRLRE  E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKMEITQHSKYTCSFCGKDSMKRAVVGIWSCKRCKRTVAGGAWVYSTTAAASVRSAVRRLRETKE 91          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL37A_MYXGL (60S ribosomal protein L37a (Fragment) OS=Myxine glutinosa GN=rpl37a PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.461e-28
Identity = 58/83 (69.88%), Postives = 68/83 (81.93%), Query Frame = 3
Query:  102 GIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 350
            GIVGKYGTRYGASLRK +KK+E++QHSKY C FCGK  +KR+AVGIW C  C K  AGGA+T NT+SAVTV+S IRRLRE  +
Sbjct:    2 GIVGKYGTRYGASLRKMVKKIEITQHSKYTCTFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTSSAVTVKSAIRRLREMKD 84          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL43B_SCHPO (60S ribosomal protein L43-B OS=Schizosaccharomyces pombe GN=rpl43b PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.252e-28
Identity = 58/93 (62.37%), Postives = 69/93 (74.19%), Query Frame = 3
Query:   78 MTKTTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGC--KDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 350
            MTK TKK G+ GKYG RYGASLR+ ++K+EV QHS+Y C FCG+  VKR A GIW C  K C K  AGGA+T+ TA+A + RSTIRRLRE  E
Sbjct:    1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGKGCSKTLAGGAWTVTTAAATSARSTIRRLREMVE 93          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL43A_SCHPO (60S ribosomal protein L43-A OS=Schizosaccharomyces pombe GN=rpl43a PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.252e-28
Identity = 59/93 (63.44%), Postives = 70/93 (75.27%), Query Frame = 3
Query:   78 MTKTTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGC--KDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 350
            MTK TKK G+ GKYG RYGASLR+ ++K+EV QHS+Y C FCG+  VKR A GIW C  K C KV AGGA+T+ TA+A + RSTIRRLRE  E
Sbjct:    1 MTKRTKKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGKGCKKVLAGGAWTVTTAAATSARSTIRRLREMVE 93          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL37A_PLAF7 (60S ribosomal protein L37a OS=Plasmodium falciparum (isolate 3D7) GN=RPL37A PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.616e-27
Identity = 56/91 (61.54%), Postives = 69/91 (75.82%), Query Frame = 3
Query:   78 MTKTTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 350
            M++ TKK G+ GKYGTRYG+SLRKQIKK+E+ QH+KY C FCGK A KR  VGIW CK C +   GGA++L T +AV  +STI RLR+Q E
Sbjct:    1 MSRRTKKVGLTGKYGTRYGSSLRKQIKKIELMQHAKYLCTFCGKTATKRTCVGIWKCKKCKRKVCGGAWSLTTPAAVAAKSTIIRLRKQKE 91          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL37L_HUMAN (Putative 60S ribosomal protein L37a-like OS=Homo sapiens GN=RPL37L PE=5 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.325e-21
Identity = 52/89 (58.43%), Postives = 63/89 (70.79%), Query Frame = 3
Query:   78 MTKTTKKAG-IVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 341
            M K TKK G IV KY T +GASL K +K++E+SQH+KY C FCGK  +KR+AV I  C  C K  AG A+T NT SAV V+S IRRL+E
Sbjct:    1 MAKCTKKVGGIVSKYRTHHGASLWKMVKEIEISQHTKYTCSFCGKTKMKRRAVKIRHCNSCMKTVAGSAWTYNTTSAVMVKSAIRRLKE 89          
The following BLAST results are available for this feature:
BLAST of FC925328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RL37A_OSTOS1.561e-3067.0360S ribosomal protein L37a OS=Ostertagia ostertagi... [more]
RL43_YEAST2.663e-3065.2260S ribosomal protein L43 OS=Saccharomyces cerevis... [more]
RL43_CANGA3.479e-3064.1360S ribosomal protein L43 OS=Candida glabrata GN=R... [more]
RL37A_SCHMA5.934e-3067.7860S ribosomal protein L37a (Fragment) OS=Schistoso... [more]
RL37A_DROME1.012e-2964.8460S ribosomal protein L37a OS=Drosophila melanogas... [more]
RL37A_MYXGL1.461e-2869.8860S ribosomal protein L37a (Fragment) OS=Myxine gl... [more]
RL43B_SCHPO4.252e-2862.3760S ribosomal protein L43-B OS=Schizosaccharomyces... [more]
RL43A_SCHPO4.252e-2863.4460S ribosomal protein L43-A OS=Schizosaccharomyces... [more]
RL37A_PLAF71.616e-2761.5460S ribosomal protein L37a OS=Plasmodium falciparu... [more]
RL37L_HUMAN1.325e-2158.43Putative 60S ribosomal protein L37a-like OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YC15FM1 TF Citrus clementina cDNA clone KN0AAP11YC15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925328 ID=FC925328; Name=FC925328; organism=Citrus clementina; type=EST; length=528bp
GCTCGGCTACCCTTATCTCTCTCTATTCTCAGCAGCAGCAAGTGCGATTT
TTAGAGTTTCTGGTCTGCTTCTGCAAAATGACAAAGACGACCAAGAAGGC
AGGAATTGTTGGGAAGTATGGTACCCGTTATGGTGCCAGTCTGCGTAAGC
AGATTAAGAAGATGGAGGTCAGTCAACACAGCAAGTACTTCTGTGAATTC
TGTGGGAAGTATGCTGTGAAGAGGAAGGCTGTGGGAATCTGGGGTTGCAA
AGACTGTGGCAAGGTGAAAGCTGGAGGTGCTTACACTTTGAATACTGCTA
GTGCTGTGACCGTGAGGAGTACAATTCGGAGGCTGAGGGAACAGACCGAG
AGTTAATTTTGTTGCCAATCTATCTTTTTTTTCCTTTATTTGTGATAGGA
GTAATTCCTGGGGCAGGATTGTCTAAAACAATTTCTACGCTTGGATATAT
GGTTTAAAAAGTTTTGAATTTGAATCCCCTTATTAAACAGATTTGATGGA
CTTTTAGTTTAAAAAAAAAAAAAAAAAA
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