FC925328

Overview
NameFC925328
Unique NameFC925328
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length528
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL37A_METS3 (50S ribosomal protein L37Ae OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.864e-13
Identity = 33/82 (40.24%), Postives = 46/82 (56.10%), Query Frame = 3
Query:   90 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRL 335
            TKK GI G++G RYG   ++ +K +E +    + C  C +  VKR+A GIW C+ CG V  GGAY   T  A +    IR +
Sbjct:    4 TKKVGITGRFGARYGRKAKRSVKMIEENMKKNHVCPRCDRPYVKRQAAGIWKCRKCGAVFTGGAYVPETPMAKSAARNIRNV 85          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL37A_METVS (50S ribosomal protein L37Ae OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.046e-13
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 3
Query:   90 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 341
            TKK G  G++G RYG  +R +++ +E+ Q+ +Y C  C    +KR    IW C  CG   AGGAYT  T +   V   IRR+ E
Sbjct:    7 TKKIGSAGRFGPRYGRKIRVRLRDVEIKQNKEYKCPVCAFPKLKRAGTSIWVCDKCGAKIAGGAYTPETGAGKVVTKAIRRVIE 90          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL37A_METM7 (50S ribosomal protein L37Ae OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.591e-13
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 3
Query:   90 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 341
            TKK G  G++G+RYG  +R +++ +E+ Q  +Y C  C    +KR    IW C  CG   AGGAYT  T +   V   IRR+ E
Sbjct:    7 TKKIGSAGRFGSRYGRKIRVRLRDVEIKQKKEYKCPVCAFPKLKRVGTSIWVCDKCGAKIAGGAYTPETGAGKVVTKAIRRVIE 90          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL37A_METM6 (50S ribosomal protein L37Ae OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.591e-13
Identity = 34/84 (40.48%), Postives = 47/84 (55.95%), Query Frame = 3
Query:   90 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 341
            TKK G  G++G+RYG  +R +++ +E+ Q  +Y C  C    +KR    IW C  CG   AGGAYT  T +   V   IRR+ E
Sbjct:    7 TKKIGSAGRFGSRYGRKIRVRLRDVEIKQKKEYKCPVCAFPKLKRVGTSIWVCDKCGAKIAGGAYTPETGAGKVVTKAIRRVIE 90          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL37A_THESM (50S ribosomal protein L37Ae OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.271e-12
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 3
Query:   90 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAY 284
            TKK G  G++G RYG  +R+++  +E     K+ C  CG+ AV+R + GIW C+ CG   AGGAY
Sbjct:    4 TKKVGSAGRFGPRYGLKIRRRVAAVEEKMRQKHTCPVCGRKAVRRISTGIWQCQKCGATFAGGAY 68          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL37A_METST (50S ribosomal protein L37Ae OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.579e-12
Identity = 30/80 (37.50%), Postives = 43/80 (53.75%), Query Frame = 3
Query:   96 KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRL 335
            K G  G++G RYG   ++ +K +E   H+K+ C  C +  VKR   GIW C+ CG V  GGAY   T      +  I+R+
Sbjct:    6 KVGSTGRFGARYGRKAKRTVKDIEDKMHAKHVCPKCDRPGVKRTHAGIWKCRKCGAVFTGGAYIPTTPMGKVAKRNIKRI 85          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL37A_ARCFU (50S ribosomal protein L37Ae OS=Archaeoglobus fulgidus GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.579e-12
Identity = 33/79 (41.77%), Postives = 43/79 (54.43%), Query Frame = 3
Query:   90 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTI 326
            TKK    G++G RYG  +R+   ++E  Q  KY C+ CGK AVKR   GIW C+ CG   AGG Y   T     V  ++
Sbjct:    4 TKKVRSAGRFGPRYGLRVRRTWLEIEAVQRQKYVCKKCGKKAVKRSGTGIWECRHCGYKFAGGCYQPVTPGGKIVEKSV 82          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL37A_THEON (50S ribosomal protein L37Ae OS=Thermococcus onnurineus (strain NA1) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.287e-12
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 3
Query:   90 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAY 284
            T K G  G++G RYG  +R+++  +E     K+ C  CG+ AV+R + GIW C+ CG   AGGAY
Sbjct:    4 TTKVGSAGRFGPRYGLKIRRRVAAVEAKMKQKHICPVCGRKAVRRISTGIWQCQKCGATFAGGAY 68          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL37A_THEGJ (50S ribosomal protein L37Ae OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.287e-12
Identity = 29/79 (36.71%), Postives = 44/79 (55.70%), Query Frame = 3
Query:   90 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTI 326
            T K G  G++G RYG  +R+++  +E     K+ C  CG+ AV+R + GIW C+ CG   AGGAY   T +    +  +
Sbjct:    4 TVKVGSAGRFGPRYGLKIRRRVAAVEARMKQKHVCPVCGRKAVRRISTGIWQCQKCGATFAGGAYLPTTPAGKVAKRVV 82          
BLAST of FC925328 vs. ExPASy Swiss-Prot
Match: RL37A_PYRKO (50S ribosomal protein L37Ae OS=Pyrococcus kodakaraensis GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.287e-12
Identity = 33/79 (41.77%), Postives = 45/79 (56.96%), Query Frame = 3
Query:   90 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNT-ASAVTVRST 323
            T K G  G++G RYG  +R+++  +E     K+ C  CG+ AV+R + GIW C+ CG   AGGAY   T A  V  R T
Sbjct:    4 TTKVGSAGRFGPRYGLKIRRRVAAVEARMKQKHVCPVCGRKAVRRISTGIWQCQKCGATFAGGAYLPTTPAGKVAKRVT 82          
The following BLAST results are available for this feature:
BLAST of FC925328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RL37A_METS33.864e-1340.2450S ribosomal protein L37Ae OS=Methanobrevibacter ... [more]
RL37A_METVS5.046e-1340.4850S ribosomal protein L37Ae OS=Methanococcus vanni... [more]
RL37A_METM76.591e-1340.4850S ribosomal protein L37Ae OS=Methanococcus marip... [more]
RL37A_METM66.591e-1340.4850S ribosomal protein L37Ae OS=Methanococcus marip... [more]
RL37A_THESM3.271e-1244.6250S ribosomal protein L37Ae OS=Thermococcus sibiri... [more]
RL37A_METST5.579e-1237.5050S ribosomal protein L37Ae OS=Methanosphaera stad... [more]
RL37A_ARCFU5.579e-1241.7750S ribosomal protein L37Ae OS=Archaeoglobus fulgi... [more]
RL37A_THEON7.287e-1243.0850S ribosomal protein L37Ae OS=Thermococcus onnuri... [more]
RL37A_THEGJ7.287e-1236.7150S ribosomal protein L37Ae OS=Thermococcus gammat... [more]
RL37A_PYRKO7.287e-1241.7750S ribosomal protein L37Ae OS=Pyrococcus kodakara... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YC15FM1 TF Citrus clementina cDNA clone KN0AAP11YC15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925328 ID=FC925328; Name=FC925328; organism=Citrus clementina; type=EST; length=528bp
GCTCGGCTACCCTTATCTCTCTCTATTCTCAGCAGCAGCAAGTGCGATTT
TTAGAGTTTCTGGTCTGCTTCTGCAAAATGACAAAGACGACCAAGAAGGC
AGGAATTGTTGGGAAGTATGGTACCCGTTATGGTGCCAGTCTGCGTAAGC
AGATTAAGAAGATGGAGGTCAGTCAACACAGCAAGTACTTCTGTGAATTC
TGTGGGAAGTATGCTGTGAAGAGGAAGGCTGTGGGAATCTGGGGTTGCAA
AGACTGTGGCAAGGTGAAAGCTGGAGGTGCTTACACTTTGAATACTGCTA
GTGCTGTGACCGTGAGGAGTACAATTCGGAGGCTGAGGGAACAGACCGAG
AGTTAATTTTGTTGCCAATCTATCTTTTTTTTCCTTTATTTGTGATAGGA
GTAATTCCTGGGGCAGGATTGTCTAAAACAATTTCTACGCTTGGATATAT
GGTTTAAAAAGTTTTGAATTTGAATCCCCTTATTAAACAGATTTGATGGA
CTTTTAGTTTAAAAAAAAAAAAAAAAAA
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