FC925329

Overview
NameFC925329
Unique NameFC925329
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length615
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14623 contig Ccv1_Contig14623:1..615. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925329 vs. ExPASy Swiss-Prot
Match: FER1_ANASO (Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=petF PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.102e-34
Identity = 71/98 (72.45%), Postives = 81/98 (82.65%), Query Frame = 2
Query:  203 MATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 490
            MAT+KV LI    G + EI  PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQS+QSFLDDDQI  G+VLTC AYPTSDV I+THKEE+L
Sbjct:    1 MATFKVTLINEAEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of FC925329 vs. ExPASy Swiss-Prot
Match: FER1_CYACA (Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.439e-34
Identity = 70/98 (71.43%), Postives = 82/98 (83.67%), Query Frame = 2
Query:  203 MATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 490
            M +YKVKL     G + EINCP+D +ILDAAEE G+DLPYSCRAGACS+C GK++SGTVDQS+QSFLDD+QI EGFVLTC AYPTS+ TI TH+EE L
Sbjct:    1 MTSYKVKLTNEKEGIDVEINCPNDQYILDAAEEQGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDEQIKEGFVLTCVAYPTSNCTILTHQEEAL 98          
BLAST of FC925329 vs. ExPASy Swiss-Prot
Match: FER1_ANAVT (Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petF1 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.439e-34
Identity = 71/98 (72.45%), Postives = 81/98 (82.65%), Query Frame = 2
Query:  203 MATYKVKLITP--GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 490
            MAT+KV LI    G    I+ PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQS+QSFLDDDQI  G+VLTC AYPTSDVTI+THKEE+L
Sbjct:    1 MATFKVTLINEAEGTSNTIDVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVTIQTHKEEDL 98          
BLAST of FC925329 vs. ExPASy Swiss-Prot
Match: FER2_PHYES (Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.186e-34
Identity = 64/96 (66.67%), Postives = 81/96 (84.38%), Query Frame = 2
Query:  206 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELA 493
            A+YKV  +TP G + I CP D+++LDAAE+ GLDLPYSCRAGACSSC GKV +G+V+Q + SFLD++Q+  G+VLTC AYPTSDVTIETHKEE+L+
Sbjct:    2 ASYKVTFVTPSGTKTITCPADTYVLDAAEDTGLDLPYSCRAGACSSCAGKVTAGSVNQEDGSFLDEEQMEAGWVLTCVAYPTSDVTIETHKEEDLS 97          
BLAST of FC925329 vs. ExPASy Swiss-Prot
Match: FER_SYNLI (Ferredoxin OS=Synechococcus lividus PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 7.140e-34
Identity = 67/96 (69.79%), Postives = 78/96 (81.25%), Query Frame = 2
Query:  203 MATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 490
            MATYKV L+ P GE  I+ P+D +ILD AEE GLDLP+SCRAGACS+C GK++ G VDQS+QSFLDDDQI +GFVLTC AYP SD  I TH+EEEL
Sbjct:    1 MATYKVTLVRPDGETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTHQEEEL 96          
BLAST of FC925329 vs. ExPASy Swiss-Prot
Match: FER_PANGI (Ferredoxin OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.140e-34
Identity = 66/93 (70.97%), Postives = 76/93 (81.72%), Query Frame = 2
Query:  212 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 490
            YKVKL+TP GE+E  CPDD +ILD AEE G+DLPYSCRAG+CSSC GKVVSG VD S+ SFL+DD +  G+VLTC AY  SDV IETHKEEE+
Sbjct:    4 YKVKLLTPEGEKEFECPDDVYILDNAEEIGIDLPYSCRAGSCSSCAGKVVSGKVDNSDNSFLNDDNMDAGYVLTCHAYANSDVVIETHKEEEV 96          
BLAST of FC925329 vs. ExPASy Swiss-Prot
Match: FER_MARPO (Ferredoxin OS=Marchantia polymorpha PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.140e-34
Identity = 67/94 (71.28%), Postives = 79/94 (84.04%), Query Frame = 2
Query:  209 TYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 490
            T+KV L TP G+  I+  DD +ILDAAEEAGL LPYSCRAGACSSC GKV +G VDQS++SFLDDDQ+ EG+VLTC AYPTSD+TI+TH+EE L
Sbjct:    1 TFKVTLNTPTGQSVIDVEDDEYILDAAEEAGLSLPYSCRAGACSSCAGKVTAGEVDQSDESFLDDDQMDEGYVLTCIAYPTSDLTIDTHQEEAL 94          
BLAST of FC925329 vs. ExPASy Swiss-Prot
Match: FER2_DUNSA (Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.140e-34
Identity = 68/93 (73.12%), Postives = 76/93 (81.72%), Query Frame = 2
Query:  212 YKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 490
            YKV L TP G++ I    D++ILDAAEEAGLDLPYSCRAGACSSC GKV +GT+DQS+QSFLDDDQ G GFVLTC AY TSD TI TH+EE L
Sbjct:    2 YKVTLKTPSGDQTIEVSPDAYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTIDQSDQSFLDDDQQGRGFVLTCVAYATSDCTISTHQEESL 94          
BLAST of FC925329 vs. ExPASy Swiss-Prot
Match: FER1_NOSMU (Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 7.140e-34
Identity = 71/98 (72.45%), Postives = 82/98 (83.67%), Query Frame = 2
Query:  203 MAT-YKVKLITPGGEEE-INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 490
            MAT YKV L+   G E  I+ PDD +ILD AE+ GLDLPYSCRAGACS+C GK+VSGTVDQS+QSFLDDDQI +G+VLTC AYPTSD+ IETHKEE+L
Sbjct:    1 MATVYKVTLVDQEGTETTIDVPDDEYILDIAEDQGLDLPYSCRAGACSTCAGKIVSGTVDQSDQSFLDDDQIEKGYVLTCVAYPTSDLKIETHKEEDL 98          
BLAST of FC925329 vs. ExPASy Swiss-Prot
Match: FER2_PHYAM (Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.325e-34
Identity = 64/95 (67.37%), Postives = 79/95 (83.16%), Query Frame = 2
Query:  206 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 490
            A+YKV  +TP G   I CP D+++LDAAEE+GLDLPYSCRAGACSSC GKV +G V+Q + SFL+++Q+  G+VLTC AYPTSDVTIETHKEE+L
Sbjct:    2 ASYKVTFVTPSGTNTITCPADTYVLDAAEESGLDLPYSCRAGACSSCAGKVTAGAVNQEDGSFLEEEQMEAGWVLTCVAYPTSDVTIETHKEEDL 96          
The following BLAST results are available for this feature:
BLAST of FC925329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER1_ANASO1.102e-3472.45Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=... [more]
FER1_CYACA1.439e-3471.43Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=... [more]
FER1_ANAVT1.439e-3472.45Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 2... [more]
FER2_PHYES4.186e-3466.67Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1[more]
FER_SYNLI7.140e-3469.79Ferredoxin OS=Synechococcus lividus PE=1 SV=2[more]
FER_PANGI7.140e-3470.97Ferredoxin OS=Panax ginseng PE=1 SV=1[more]
FER_MARPO7.140e-3471.28Ferredoxin OS=Marchantia polymorpha PE=1 SV=1[more]
FER2_DUNSA7.140e-3473.12Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1[more]
FER1_NOSMU7.140e-3472.45Ferredoxin-1 OS=Nostoc muscorum PE=1 SV=2[more]
FER2_PHYAM9.325e-3467.37Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH17FM1 TF Citrus clementina cDNA clone KN0AAP8YH17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925329 ID=FC925329; Name=FC925329; organism=Citrus clementina; type=EST; length=615bp
CTTTATCTTGTCATACTCAAAACCAAAAACTCAACTGTCCCTTCCTTGAG
CAAGAGCAGCAACAATGGCCACCCTCTCAAGCGCCATGGTCAGCACCTCA
TTCATCAGAAGCAAGCCTACAGCGACCAGCCTCAAAGCCATGCCTAACAT
GGGTCAGGCTATATTTGGCCTCAAAGCCAACAGAGGTGGCCGTGTTGTAG
CCATGGCTACATACAAAGTCAAGCTCATTACACCTGGGGGAGAGGAAGAA
ATCAACTGTCCTGATGACTCGTTTATTCTTGATGCTGCTGAAGAAGCTGG
GCTTGATCTTCCGTACTCATGCAGGGCTGGGGCTTGCTCTTCCTGTACTG
GGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCAAAGCTTTCTGGAT
GATGATCAAATTGGAGAAGGTTTTGTTCTCACTTGTGCTGCTTATCCAAC
AAGTGATGTTACTATAGAGACTCACAAGGAAGAGGAGCTCGCTGGTTAAT
AATGTGCTCTTGATATCTCATTATTATCTTCTCTTTTATGTGTTGTGTTT
TGTCTGATTATTTTAATGCTTTGAAAGGGATATTGAGTAATTTGAGAAAA
AAAAAAAAAAAAAAA
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