FC925337

Overview
NameFC925337
Unique NameFC925337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14624 contig Ccv1_Contig14624:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADJ_SHIF8 (Fatty acid oxidation complex subunit alpha OS=Shigella flexneri serotype 5b (strain 8401) GN=fadJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.007e-18
Identity = 64/213 (30.05%), Postives = 102/213 (47.89%), Query Frame = 3
Query:   66 APRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 635
            A   T+ V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A   +                  P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    4 ASAFTLNVRLDNIAIITIDVPDEKMNTLKAEFASQVRAIIKQLRENKELRGVVFISAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEINALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEA----AVELAKKDRPSSRPL 212          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADJ_SHIBS (Fatty acid oxidation complex subunit alpha OS=Shigella boydii serotype 4 (strain Sb227) GN=fadJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.007e-18
Identity = 65/213 (30.52%), Postives = 104/213 (48.83%), Query Frame = 3
Query:   66 APRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVF---QKVHGADCKK---------------PIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 635
            A   T+ V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+    + V  A+                  P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S  +EM+L  K + +++  KLGL+D VV    LL+V    A+++A + +P  R L
Sbjct:    4 ASAFTLNVRLDNIAIITIDVPDEKMNTLKAEFASQVRAIIKQLRENKELRGVVFISAKPDNFIAGADINMIGNCKTVQEAEALARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTTLEMILTGKQLRAKQALKLGLVDDVVPHSILLEV----AVELAKKDRPSSRPL 212          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADJ_ECOHS (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O9:H4 (strain HS) GN=fadJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.007e-18
Identity = 64/213 (30.05%), Postives = 102/213 (47.89%), Query Frame = 3
Query:   66 APRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 635
            A   T+ V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A   +                  P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    4 ASAFTLNVRLDNIAIITIDVPDEKMNTLKAEFASQVRAIIKQLRENKELRGVVFISAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEA----AVELAKKDRPSSRPL 212          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADJ_ECO5E (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.541e-18
Identity = 63/209 (30.14%), Postives = 101/209 (48.33%), Query Frame = 3
Query:   78 TMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 635
            T+ V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A   +                  P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    8 TLNVRLDNIAIITIDVPGEKMNTLKAEFASQVRAIIKQLRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEA----AVELAKKDRPSSRPL 212          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADJ_ECO57 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O157:H7 GN=fadJ PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.541e-18
Identity = 63/209 (30.14%), Postives = 101/209 (48.33%), Query Frame = 3
Query:   78 TMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 635
            T+ V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A   +                  P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    8 TLNVRLDNIAIITIDVPGEKMNTLKAEFASQVRAIIKQLRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEA----AVELAKKDRPSSRPL 212          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADJ_ECOUT (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain UTI89 / UPEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 64/213 (30.05%), Postives = 102/213 (47.89%), Query Frame = 3
Query:   66 APRVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 635
            A   T+ V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A   +                  P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    4 ASAFTLNVRLDNIAIITIDVPGEKMNTLKAEFASQVRAIIKQIRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEVLARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQAVKLGLVDDVVPHSILLEA----AVELAKQDRPSSRPL 212          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADJ_ECOL5 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 64/213 (30.05%), Postives = 102/213 (47.89%), Query Frame = 3
Query:   66 APRVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 635
            A   T+ V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A   +                  P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    4 ASAFTLNVRLDNIAIITIDVPGEKMNTLKAEFASQVRAIIKQLRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEVLARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQAVKLGLVDDVVPHSILLEA----AVELAKQDRPSSRPL 212          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADJ_ECOK1 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O1:K1 / APEC GN=fadJ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 64/213 (30.05%), Postives = 102/213 (47.89%), Query Frame = 3
Query:   66 APRVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 635
            A   T+ V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A   +                  P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    4 ASAFTLNVRLDNIAIITIDVPGEKMNTLKAEFASQVRAIIKQIRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEVLARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQAVKLGLVDDVVPHSILLEA----AVELAKQDRPSSRPL 212          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADJ_ECO81 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O81 (strain ED1a) GN=fadJ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 64/213 (30.05%), Postives = 102/213 (47.89%), Query Frame = 3
Query:   66 APRVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 635
            A   T+ V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A   +                  P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    4 ASAFTLNVRLDNIAIITIDVPGEKMNTLKAEFASQVRAIIKQLRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEVLARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQAVKLGLVDDVVPHSILLEA----AVELAKQDRPSSRPL 212          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADJ_ECO45 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 64/213 (30.05%), Postives = 102/213 (47.89%), Query Frame = 3
Query:   66 APRVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 635
            A   T+ V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A   +                  P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    4 ASAFTLNVRLDNIAIITIDVPGEKMNTLKAEFASQVRAIIKQIRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEVLARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQAVKLGLVDDVVPHSILLEA----AVELAKQDRPSSRPL 212          
The following BLAST results are available for this feature:
BLAST of FC925337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
FADJ_SHIF85.007e-1830.05Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADJ_SHIBS5.007e-1830.52Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADJ_ECOHS5.007e-1830.05Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECO5E8.541e-1830.14Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECO578.541e-1830.14Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECOUT1.115e-1730.05Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECOL51.115e-1730.05Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECOK11.115e-1730.05Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECO811.115e-1730.05Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECO451.115e-1730.05Fatty acid oxidation complex subunit alpha OS=Esch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YH20FM1 TF Citrus clementina cDNA clone KN0AAP8YH20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925337 ID=FC925337; Name=FC925337; organism=Citrus clementina; type=EST; length=672bp
TTCGGATTGATATTAAAATCTCCACTAAAAGAAATAATTGATAATAATAA
CAGTAAGCCATGGCAGCACCGCGAGTGACGATGGAAGTCGGAAACGACGG
CGTTGCGATCATCACTTTGATTAATCCTCCCGTGAACGCCTTAGCTATTC
CAATTGTTGCCGGATTGAAGGACAAGTTTGAGGAGGCCACGAGCCGAGAC
GACGTTAAGGCTATTGTTCTGACTGGCAATGGTGGAAGGTTTTCTGGCGG
TTTCGACATAAATGTTTTTCAGAAGGTTCACGGGGCTGATTGCAAGAAGC
CCATTGTTGCAGCTGTGGAGGGGTTAGCCCTTGGAGGTGGCTTAGAATTG
GCAATGGGATGCCATGCACGTATTGCTGCTCCAAAGACTCAACTTGGCTT
GCCTGAGCTGACACTAGGGGTAATTCCAGGTTTTGGAGGCACACAACGTC
TACCAAGGCTGGTGGGCCTCTCAAAGGCTATTGAAATGATGCTGTTATCT
AAATCAATCACGTCTGAGGAGGGCTGGAAGCTGGGTCTAATTGATGCTGT
TGTGACTTCTGAAGAGTTGCTGAAAGTATCTCGACTCTGGGCTTTAGACA
TTGCAGCAAGGCGCAAACCATGGATACGTTCCCTTCACAGGACAGACAAA
CTTGGTTCTCTTTCTGAAGCAA
back to top