FC925337

Overview
NameFC925337
Unique NameFC925337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14624 contig Ccv1_Contig14624:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADB_SHEPA (Fatty acid oxidation complex subunit alpha OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=fadB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 36/85 (42.35%), Postives = 47/85 (55.29%), Query Frame = 3
Query:  369 RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPW 623
            RIA    ++GLPE  LG+IPGFGGT RLPR++G   A+E +   K    E   K+G IDAVV  E+L   +     D    +  W
Sbjct:  127 RIADTTARIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITSGKDQRPEAALKVGAIDAVVAPEQLKPAALKMLKDALIEKLDW 211          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADB_PSEU5 (Fatty acid oxidation complex subunit alpha OS=Pseudomonas stutzeri (strain A1501) GN=fadB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 38/101 (37.62%), Postives = 58/101 (57.43%), Query Frame = 3
Query:  354 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE-------ELLKVSRLWALDIAARRKPWIRSL 635
            M    R+ +   ++GLPE+ LG+ PGFGGT RLPRL+G+  A+E +   K   +E+  K+  +DAVV  E       +L+K +    LD  A+R+P +  L
Sbjct:  123 MAADYRVMSTTAKVGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVHAVDAVVAPEKLQEAALDLVKRAISGELDYKAKRQPKLDKL 223          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADB_PSE14 (Fatty acid oxidation complex subunit alpha OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=fadB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 3
Query:  369 RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 611
            R+ +   ++GLPE+ LG+ PGFGGT RLPR++G   AIE +   K  ++E+  K+G +DAVV  E+L    +  ALD+  R
Sbjct:  128 RVISSSARIGLPEVKLGLYPGFGGTVRLPRIIGADNAIEWIASGKESSAEDALKVGAVDAVVAPEKL----QAAALDLIQR 204          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADB_AERS4 (Fatty acid oxidation complex subunit alpha OS=Aeromonas salmonicida (strain A449) GN=fadB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 51/197 (25.89%), Postives = 79/197 (40.10%), Query Frame = 3
Query:   96 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA--------------------DCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPW 623
            +G+A +    P  VN L    +  L +       + D+K ++LT     F  G DI  F ++                       D   P                 +    R+A    ++GLPE  LG++PGFGGT RLPR++G   A+E +   K   +++  K+G IDAVV  + L   +     D  A +  W
Sbjct:   15 NGIAELRFDAPGSVNKLDRATLLSLSEAIAALQQQADLKGLILTSGKDAFIVGADITEFLELFDLPQEDLLGWLKKANDIFSAIEDLPVPTLSAIKGHALGGGCETILSTDFRLADTSAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWITTGKDYRADDALKVGAIDAVVAPDALHSAAVQMMKDAIAGKLNW 211          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADB_AERHH (Fatty acid oxidation complex subunit alpha OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 51/204 (25.00%), Postives = 80/204 (39.22%), Query Frame = 3
Query:   75 VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA--------------------DCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPW 623
            +T+    DG+A +    P  VN L    +  L +         ++K ++LT     F  G DI  F ++                       D   P                 +    R+A    ++GLPE  LG++PGFGGT RLPR++G   A+E +   K   +++  K+G IDAVV  + L   +     D    +  W
Sbjct:    8 LTVSYLEDGIAELRFDAPGSVNKLDRATLLSLSEAIAALQQERELKGLILTSGKDAFIVGADITEFLELFDLPQADLLGWLKKANDIFSAIEDLPVPTLSAIKGHALGGGCETILSTDFRLADTSAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWITTGKDYRADDALKVGAIDAVVAPDALQSAAVQMIKDAVKGKLDW 211          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADB_PSESM (Fatty acid oxidation complex subunit alpha OS=Pseudomonas syringae pv. tomato GN=fadB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 34/81 (41.98%), Postives = 53/81 (65.43%), Query Frame = 3
Query:  369 RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 611
            R+ +   ++GLPE+ LG+ PGFGGT RLPR++G   AIE +   K  ++E+  K+G++DA+V  E+L    +  ALD+  R
Sbjct:  128 RVISSSARVGLPEVKLGLYPGFGGTVRLPRIIGADNAIEWIASGKENSAEDALKVGVVDAIVAPEKL----QAAALDLIQR 204          
The following BLAST results are available for this feature:
BLAST of FC925337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
FADB_SHEPA1.560e-1142.35Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_PSEU51.560e-1137.62Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_PSE141.560e-1143.21Fatty acid oxidation complex subunit alpha OS=Pseu... [more]
FADB_AERS41.560e-1125.89Fatty acid oxidation complex subunit alpha OS=Aero... [more]
FADB_AERHH1.560e-1125.00Fatty acid oxidation complex subunit alpha OS=Aero... [more]
FADB_PSESM2.038e-1141.98Fatty acid oxidation complex subunit alpha OS=Pseu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH20FM1 TF Citrus clementina cDNA clone KN0AAP8YH20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925337 ID=FC925337; Name=FC925337; organism=Citrus clementina; type=EST; length=672bp
TTCGGATTGATATTAAAATCTCCACTAAAAGAAATAATTGATAATAATAA
CAGTAAGCCATGGCAGCACCGCGAGTGACGATGGAAGTCGGAAACGACGG
CGTTGCGATCATCACTTTGATTAATCCTCCCGTGAACGCCTTAGCTATTC
CAATTGTTGCCGGATTGAAGGACAAGTTTGAGGAGGCCACGAGCCGAGAC
GACGTTAAGGCTATTGTTCTGACTGGCAATGGTGGAAGGTTTTCTGGCGG
TTTCGACATAAATGTTTTTCAGAAGGTTCACGGGGCTGATTGCAAGAAGC
CCATTGTTGCAGCTGTGGAGGGGTTAGCCCTTGGAGGTGGCTTAGAATTG
GCAATGGGATGCCATGCACGTATTGCTGCTCCAAAGACTCAACTTGGCTT
GCCTGAGCTGACACTAGGGGTAATTCCAGGTTTTGGAGGCACACAACGTC
TACCAAGGCTGGTGGGCCTCTCAAAGGCTATTGAAATGATGCTGTTATCT
AAATCAATCACGTCTGAGGAGGGCTGGAAGCTGGGTCTAATTGATGCTGT
TGTGACTTCTGAAGAGTTGCTGAAAGTATCTCGACTCTGGGCTTTAGACA
TTGCAGCAAGGCGCAAACCATGGATACGTTCCCTTCACAGGACAGACAAA
CTTGGTTCTCTTTCTGAAGCAA
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