FC925337

Overview
NameFC925337
Unique NameFC925337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14624 contig Ccv1_Contig14624:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADJ_ECOLC (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=fadJ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.903e-17
Identity = 63/213 (29.58%), Postives = 101/213 (47.42%), Query Frame = 3
Query:   66 APRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 635
            A   T+ V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A   +                  P+                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++  + +P  R L
Sbjct:    4 ASAFTLNVRLDNIAIITIDVPDEKMNTLKAEFASQVRAIIKQLRENKELRGVVFISAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEA----AVELVKQDRPSSRPL 212          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: ECHM_DICDI (Probable enoyl-CoA hydratase, mitochondrial OS=Dictyostelium discoideum GN=echs1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.485e-17
Identity = 62/185 (33.51%), Postives = 89/185 (48.11%), Query Frame = 3
Query:  102 VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGADC---------------KKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 608
            V ++TL  P  +NAL+  +++ +    +      DV +I++TG+   F+ G DI   +KV   D                +KPI                M C   IA  K   G PE+ LG IPG GGTQRL R +G SKA+E++L   ++T+ E  K GL+  VV  EELL  +   A  IA+
Sbjct:   34 VGLVTLNRPKSLNALSDGLISEINSAVKLFQEDKDVGSIIITGSEKAFAAGADIKEMEKVTLPDAYNNDLLAQWHDLTKIRKPIIAAVNGYALGGGCELAMMCDIIIAGEKAVFGQPEIKLGTIPGCGGTQRLIRAIGKSKAMELVLTGNNLTAVEAEKAGLVSKVVPVEELLTEATKMAEKIAS 218          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADJ_SHEHH (Fatty acid oxidation complex subunit alpha OS=Shewanella halifaxensis (strain HAW-EB4) GN=fadJ PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.245e-17
Identity = 60/191 (31.41%), Postives = 93/191 (48.69%), Query Frame = 3
Query:   93 NDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGA-DCKK-----------------PIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWAL 596
            +DG+AI+T+  P   +N L       + D   E  +   +K +VL +G    F  G DI++      A D K+                 P+                + CH R+ +  PKT +G+PE+ LG++PG GGTQRLPRLVG++ A++MML  K +  ++  K+GL+D  V    LL+ +   AL
Sbjct:   13 DDGIAILTMDVPGETMNTLRSEFGPEISDVLAEIKADTSIKGLVLVSGKKDSFVAGADISMLDACETATDAKQLSQQGHVVFNELESLPIPVVAAINGACLGGGLELALACHKRVCSLNPKTMMGVPEVQLGLLPGGGGTQRLPRLVGVTTALDMMLTGKQLRPKQALKMGLVDDAVPESILLRTAVEMAL 203          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADJ_ECOLI (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain K12) GN=fadJ PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 61/211 (28.91%), Postives = 102/211 (48.34%), Query Frame = 3
Query:   78 TMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVF--------------------QKVHGADCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 635
            T+ V  D +A+IT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+                      ++H    +  +                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    8 TLNVRLDNIAVITIDVPGEKMNTLKAEFASQVRAIIKQLRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEIHALPIQ--VIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEA----AVELAKKERPSSRPL 212          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADJ_ECODH (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain K12 / DH10B) GN=fadJ PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 61/211 (28.91%), Postives = 102/211 (48.34%), Query Frame = 3
Query:   78 TMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVF--------------------QKVHGADCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 635
            T+ V  D +A+IT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+                      ++H    +  +                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    8 TLNVRLDNIAVITIDVPGEKMNTLKAEFASQVRAIIKQLRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEIHALPIQ--VIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEA----AVELAKKERPSSRPL 212          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADJ_ECOBW (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain K12 / BW2952) GN=fadJ PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 61/211 (28.91%), Postives = 102/211 (48.34%), Query Frame = 3
Query:   78 TMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVF--------------------QKVHGADCKKPIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 635
            T+ V  D +A+IT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+                      ++H    +  +                + CH R+    PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    8 TLNVRLDNIAVITIDVPGEKMNTLKAEFASQVRAIIKQLRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEIHALPIQ--VIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEA----AVELAKKERPSSRPL 212          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADJ_ECO7I (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.239e-17
Identity = 63/213 (29.58%), Postives = 101/213 (47.42%), Query Frame = 3
Query:   66 APRVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 635
            A   T+ V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A   +                  P+                + CH R+     KT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    4 ASAFTLNVRLDNIAIITIDVPGEKMNTLKAEFASQVRAIIKQLRENKELRGVVFISAKPDNFIAGADINMIGNCKTAQEAEVLARQGQQLMAEIHALPVPVIAAIHGACLGGGLELALACHGRVCTDDAKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPQSILLEA----AVELAKQDRPSSRPL 212          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADJ_SHESW (Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain W3-18-1) GN=fadJ PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 64/204 (31.37%), Postives = 97/204 (47.55%), Query Frame = 3
Query:   93 NDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 635
            +DG+AI+T+  P   +N L       + +   E  S   ++ +VL +G    F  G DI++      A   K                  P+                + CH R+ +   KT LG+PE+ LG++PG GGTQRLPRLVG++ A++MML  K I S++  K+GL++ VV    LL+ +   AL      KP  +SL
Sbjct:   11 DDGIAILTMDVPGETMNTLKAQFGPEISEILAEIKSDPHIRGLVLISGKKDSFVAGADISMLDACKTAGDAKALSQQGHVVFNELEALKIPVVAAIHGACLGGGLELALACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRSKQALKMGLVNDVVPQTILLQTAVEMALTGKRAPKPVKKSL 214          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADJ_ECOSM (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17
Identity = 63/213 (29.58%), Postives = 101/213 (47.42%), Query Frame = 3
Query:   66 APRVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 635
            A   T+ V  D +AIIT+  P   +N L     + ++   ++     +++ +V ++     F  G DIN+      A   +                  P+                + CH R+     KT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L  K + +++  KLGL+D VV    LL+     A+++A + +P  R L
Sbjct:    4 ASAFTLNVRLDNIAIITIDVPGEKMNTLKAEFASQVRAIIKQLRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEVLARQGQQLMAEIHALPVPVIAAIHGACLGGGLELALACHGRVCTDDAKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPQSILLEA----AVELAKQDRPSSRPL 212          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADJ_KLEP3 (Fatty acid oxidation complex subunit alpha OS=Klebsiella pneumoniae (strain 342) GN=fadJ PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.230e-17
Identity = 61/210 (29.05%), Postives = 99/210 (47.14%), Query Frame = 3
Query:   81 MEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDIN--------------------VFQKVHGADCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 635
            +EV  D +A+IT+  P   +N L       ++    +      V+ +V ++     F  G DIN                    +  ++HG     P+                + CH RI +   KT+LGLPE+ LG++PG GGTQRLPRL+G+S A++MML  + + + +  K GL+D VV    LL+     A+++A + +P  R +
Sbjct:    9 LEVRADKIAVITIDAPGEKMNTLKAEFGNQVRGLIRQVRDDKSVRGVVFISAKTDNFIAGADINMIARCRSAQEAEALARQGQQIMAEIHGLSI--PVIAAIHGACLGGGLELALACHGRICSDDEKTRLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMMLTGRQLRARQALKAGLVDEVVPQAILLQA----AVELALKGRPASRDM 212          
The following BLAST results are available for this feature:
BLAST of FC925337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
FADJ_ECOLC1.903e-1729.58Fatty acid oxidation complex subunit alpha OS=Esch... [more]
ECHM_DICDI2.485e-1733.51Probable enoyl-CoA hydratase, mitochondrial OS=Dic... [more]
FADJ_SHEHH3.245e-1731.41Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_ECOLI4.239e-1728.91Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECODH4.239e-1728.91Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECOBW4.239e-1728.91Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECO7I4.239e-1729.58Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_SHESW5.536e-1731.37Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_ECOSM5.536e-1729.58Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_KLEP37.230e-1729.05Fatty acid oxidation complex subunit alpha OS=Kleb... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH20FM1 TF Citrus clementina cDNA clone KN0AAP8YH20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925337 ID=FC925337; Name=FC925337; organism=Citrus clementina; type=EST; length=672bp
TTCGGATTGATATTAAAATCTCCACTAAAAGAAATAATTGATAATAATAA
CAGTAAGCCATGGCAGCACCGCGAGTGACGATGGAAGTCGGAAACGACGG
CGTTGCGATCATCACTTTGATTAATCCTCCCGTGAACGCCTTAGCTATTC
CAATTGTTGCCGGATTGAAGGACAAGTTTGAGGAGGCCACGAGCCGAGAC
GACGTTAAGGCTATTGTTCTGACTGGCAATGGTGGAAGGTTTTCTGGCGG
TTTCGACATAAATGTTTTTCAGAAGGTTCACGGGGCTGATTGCAAGAAGC
CCATTGTTGCAGCTGTGGAGGGGTTAGCCCTTGGAGGTGGCTTAGAATTG
GCAATGGGATGCCATGCACGTATTGCTGCTCCAAAGACTCAACTTGGCTT
GCCTGAGCTGACACTAGGGGTAATTCCAGGTTTTGGAGGCACACAACGTC
TACCAAGGCTGGTGGGCCTCTCAAAGGCTATTGAAATGATGCTGTTATCT
AAATCAATCACGTCTGAGGAGGGCTGGAAGCTGGGTCTAATTGATGCTGT
TGTGACTTCTGAAGAGTTGCTGAAAGTATCTCGACTCTGGGCTTTAGACA
TTGCAGCAAGGCGCAAACCATGGATACGTTCCCTTCACAGGACAGACAAA
CTTGGTTCTCTTTCTGAAGCAA
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