FC925337

Overview
NameFC925337
Unique NameFC925337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADJ_SHEB5 (Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.588e-16
Identity = 62/204 (30.39%), Postives = 96/204 (47.06%), Query Frame = 3
Query:   93 NDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 635
            +DG+AI+T+  P   +N L       + +   +  S   ++ +VL +G    F  G DI++      A   K                  P+                + CH R+ +   KT LG+PE+ LG++PG GGTQRLPRLVG++ A++MML  K I  ++  K+GL++ VV    LL+ +   AL      KP  +SL
Sbjct:   11 DDGIAILTMDVPGETMNTLKAQFGPEISEILADIKSDSSIRGLVLISGKKDSFVAGADISMLDACKTAGDAKALSQQGHVVFNELEALTIPVVAAIHGACLGGGLELALACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKMGLVNDVVPQTILLQTAVEMALAGKRAPKPVKKSL 214          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADJ_SHEFN (Fatty acid oxidation complex subunit alpha OS=Shewanella frigidimarina (strain NCIMB 400) GN=fadJ PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.686e-16
Identity = 61/205 (29.76%), Postives = 97/205 (47.32%), Query Frame = 3
Query:   93 NDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKA-IVLTGNGGRFSGGFDIN--------------------VFQKVHGADCKKPIXXXXXXXXXXXXXXXXMGCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRS 632
            +DG+AI+T+  P   +N L       + +   E  +   +K  +V++G    F  G DI                     VF ++ G     P+                + CH R+ +   KT LG+PE+ LG++PG GGTQRLPRLVG++ A++MML  K I  ++  K+GL++ VV +  LL+ +   A       KP ++S
Sbjct:   13 DDGIAILTMDVPGETMNTLKEQFGPEISEILTEIKADSSIKGLVVISGKADSFVAGADITMLAACKNEEQAKTLSQQGHVVFAELEGLSI--PVVAAINGACLGGGLELALACHLRVCSDDKKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKMGLVNDVVPNSILLETAVELAKKGKQAAKPVVQS 215          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADJ_ENTS8 (Fatty acid oxidation complex subunit alpha OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=fadJ PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.686e-16
Identity = 47/102 (46.08%), Postives = 65/102 (63.73%), Query Frame = 3
Query:  354 MGCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL 653
            + CH+RI     KT LGLPE+ LG++PG GGTQRLPRLVG+S A+EM+L  K +   +  K GL+D VV    LL+     A ++A +R+P  R L   ++L
Sbjct:  121 LACHSRICTDDVKTLLGLPEVQLGLLPGSGGTQRLPRLVGVSTALEMILAGKQLRPRQALKAGLVDDVVPQSILLEA----AAELAKKRRPAPRRLPVRERL 218          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADB_SALSV (Fatty acid oxidation complex subunit alpha OS=Salmonella schwarzengrund (strain CVM19633) GN=fadB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.686e-16
Identity = 63/208 (30.29%), Postives = 93/208 (44.71%), Query Frame = 3
Query:   96 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF------------QKVHGA--------DCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL-------LKVSRLWALDIAARRKPWIRSL 635
            DG+A +    P  VN L    VA L    E    + D+K ++L  N   F  G DI  F            Q +H A        D   P                 +    R+A P  ++GLPE  LG++PGFGG+ R+PR++G   A+E++   K I +E+  K+GL+D VV  E+L       L+ +    LD  A+R+P +  L
Sbjct:   15 DGIAELVFDAPGSVNKLDTATVASLGQALEVLEKQHDLKGLLLRSNKAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTLAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDIGAEQALKIGLVDGVVKQEKLIDGAIAVLRQAITGDLDWRAKRQPKLEPL 222          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADJ_SHEON (Fatty acid oxidation complex subunit alpha OS=Shewanella oneidensis GN=fadJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.121e-16
Identity = 62/203 (30.54%), Postives = 94/203 (46.31%), Query Frame = 3
Query:   96 DGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 635
            DG+AI+T+  P   +N L       + +   E      ++ +VL +G    F  G DI++      A   K                  P+                + CH R+ +   KT LG+PE+ LG++PG GGTQRLPRLVG++ A++MML  K I  ++  K+GL++ VV    LL+ +   AL      KP  +SL
Sbjct:   14 DGIAILTMDVPGETMNTLKAEFGPEISEILSEIKRDSSIRGLVLISGKKDSFVAGADISMLDACQTAGDAKALSQQGHVVFNELEALNIPVVAAIHGACLGGGLELALACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKMGLVNDVVPQTILLQTAVEMALAGKQIAKPVKKSL 216          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADJ_SERP5 (Fatty acid oxidation complex subunit alpha OS=Serratia proteamaculans (strain 568) GN=fadJ PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.121e-16
Identity = 65/213 (30.52%), Postives = 95/213 (44.60%), Query Frame = 3
Query:   63 AAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAD-----CKK-------------PIXXXXXXXXXXXXXXXXMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL-----KVSRLWALDIAARRKPW 623
            +A ++T+   N GV  I +    VN L    V  + D    A     ++ +V+ +G    F  G DI +      A       KK             P+                + CH R+ +   KT LGLPE+ LG++PG GGTQRLPRL+G SKA++M+L  K I + +  +LGL+D  V    LL     +V + W    + R  PW
Sbjct:    9 SAFQLTIRPDNIGVITIDVPGEKVNTLKAEFVEQVNDVLIRAQQHPALEGLVIVSGKPDSFIAGADITMIAACTTAKEAETLAKKGQSTLAQIAAFQVPVVAAIHGACLGGGLELALACHGRVCSLDDKTALGLPEVQLGLLPGSGGTQRLPRLIGASKALDMILTGKHIRARQALRLGLVDDAVPQSILLQTAIERVKQGWQ---SRRELPW 218          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADB_SALTY (Fatty acid oxidation complex subunit alpha OS=Salmonella typhimurium GN=fadB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.121e-16
Identity = 63/208 (30.29%), Postives = 92/208 (44.23%), Query Frame = 3
Query:   96 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF------------QKVHGA--------DCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL-------LKVSRLWALDIAARRKPWIRSL 635
            DG+A +    P  VN L    VA L    E    + D+K ++L  N   F  G DI  F            Q +H A        D   P                 +    R+A P  ++GLPE  LG++PGFGG+ RLPR++G   A+E++   K + +E   K+GL+D VV  E+L       L+ +    LD  A+R+P +  L
Sbjct:   15 DGIAELVFDAPGSVNKLDTATVASLGQALEVLEKQHDLKGLLLRSNKAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTLAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRLPRMLGADSALEIIAAGKDVGAEHALKIGLVDGVVKQEKLIEGAIAVLRQAITGDLDWRAKRQPKLEPL 222          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADB_SALTI (Fatty acid oxidation complex subunit alpha OS=Salmonella typhi GN=fadB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.121e-16
Identity = 63/208 (30.29%), Postives = 92/208 (44.23%), Query Frame = 3
Query:   96 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF------------QKVHGA--------DCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL-------LKVSRLWALDIAARRKPWIRSL 635
            DG+A +    P  VN L    VA L    E    + D+K ++L  N   F  G DI  F            Q +H A        D   P                 +    R+A P  ++GLPE  LG++PGFGG+ RLPR++G   A+E++   K + +E   K+GL+D VV  E+L       L+ +    LD  A+R+P +  L
Sbjct:   15 DGIAELVFDAPGSVNKLDTATVASLGQALEVLEKQHDLKGLLLRSNKAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTLAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRLPRMLGADSALEIIAAGKDVGAEHALKIGLVDGVVKQEKLIEGAIAVLRQAITGDLDWRAKRQPKLEPL 222          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADB_SALPK (Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi A (strain AKU_12601) GN=fadB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.121e-16
Identity = 63/208 (30.29%), Postives = 92/208 (44.23%), Query Frame = 3
Query:   96 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF------------QKVHGA--------DCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL-------LKVSRLWALDIAARRKPWIRSL 635
            DG+A +    P  VN L    VA L    E    + D+K ++L  N   F  G DI  F            Q +H A        D   P                 +    R+A P  ++GLPE  LG++PGFGG+ RLPR++G   A+E++   K + +E   K+GL+D VV  E+L       L+ +    LD  A+R+P +  L
Sbjct:   15 DGIAELVFDAPGSVNKLDTATVASLGQALEVLEKQHDLKGLLLRSNKAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTLAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRLPRMLGADSALEIIAAGKDVGAEHALKIGLVDGVVKQEKLIEGAIAVLRQAITGDLDWRAKRQPKLEPL 222          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADB_SALPB (Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=fadB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.121e-16
Identity = 63/208 (30.29%), Postives = 92/208 (44.23%), Query Frame = 3
Query:   96 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF------------QKVHGA--------DCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL-------LKVSRLWALDIAARRKPWIRSL 635
            DG+A +    P  VN L    VA L    E    + D+K ++L  N   F  G DI  F            Q +H A        D   P                 +    R+A P  ++GLPE  LG++PGFGG+ RLPR++G   A+E++   K + +E   K+GL+D VV  E+L       L+ +    LD  A+R+P +  L
Sbjct:   15 DGIAELVFDAPGSVNKLDTATVASLGQALEVLEKQHDLKGLLLRSNKAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTLAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRLPRMLGADSALEIIAAGKDVGAEHALKIGLVDGVVKQEKLIEGAIAVLRQAITGDLDWRAKRQPKLEPL 222          
The following BLAST results are available for this feature:
BLAST of FC925337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
FADJ_SHEB53.588e-1630.39Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_SHEFN4.686e-1629.76Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_ENTS84.686e-1646.08Fatty acid oxidation complex subunit alpha OS=Ente... [more]
FADB_SALSV4.686e-1630.29Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SHEON6.121e-1630.54Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_SERP56.121e-1630.52Fatty acid oxidation complex subunit alpha OS=Serr... [more]
FADB_SALTY6.121e-1630.29Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADB_SALTI6.121e-1630.29Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADB_SALPK6.121e-1630.29Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADB_SALPB6.121e-1630.29Fatty acid oxidation complex subunit alpha OS=Salm... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH20FM1 TF Citrus clementina cDNA clone KN0AAP8YH20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925337 ID=FC925337; Name=FC925337; organism=Citrus clementina; type=EST; length=672bp
TTCGGATTGATATTAAAATCTCCACTAAAAGAAATAATTGATAATAATAA
CAGTAAGCCATGGCAGCACCGCGAGTGACGATGGAAGTCGGAAACGACGG
CGTTGCGATCATCACTTTGATTAATCCTCCCGTGAACGCCTTAGCTATTC
CAATTGTTGCCGGATTGAAGGACAAGTTTGAGGAGGCCACGAGCCGAGAC
GACGTTAAGGCTATTGTTCTGACTGGCAATGGTGGAAGGTTTTCTGGCGG
TTTCGACATAAATGTTTTTCAGAAGGTTCACGGGGCTGATTGCAAGAAGC
CCATTGTTGCAGCTGTGGAGGGGTTAGCCCTTGGAGGTGGCTTAGAATTG
GCAATGGGATGCCATGCACGTATTGCTGCTCCAAAGACTCAACTTGGCTT
GCCTGAGCTGACACTAGGGGTAATTCCAGGTTTTGGAGGCACACAACGTC
TACCAAGGCTGGTGGGCCTCTCAAAGGCTATTGAAATGATGCTGTTATCT
AAATCAATCACGTCTGAGGAGGGCTGGAAGCTGGGTCTAATTGATGCTGT
TGTGACTTCTGAAGAGTTGCTGAAAGTATCTCGACTCTGGGCTTTAGACA
TTGCAGCAAGGCGCAAACCATGGATACGTTCCCTTCACAGGACAGACAAA
CTTGGTTCTCTTTCTGAAGCAA
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