FC925337

Overview
NameFC925337
Unique NameFC925337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14624 contig Ccv1_Contig14624:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADB_ECOBW (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain K12 / BW2952) GN=fadB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 59/208 (28.37%), Postives = 95/208 (45.67%), Query Frame = 3
Query:   96 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF------------QKVHGA--------DCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL-------WALDIAARRKPWIRSL 635
            DG+A +    P  VN L    VA L +       + D+K ++L  N   F  G DI  F            Q +H A        D   P                 +    R+A P  ++GLPE  LG++PGFGG+ R+PR++G   A+E++   K + +++  K+GL+D VV +E+L++ ++          LD  A+R+P +  L
Sbjct:   15 DGIAELVFDAPGSVNKLDTATVASLGEAIGVLEQQSDLKGLLLRSNKAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTIAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDVGADQALKIGLVDGVVKAEKLVEGAKAVLRQAINGDLDWKAKRQPKLEPL 222          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADB_ECO8A (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O8 (strain IAI1) GN=fadB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 59/208 (28.37%), Postives = 95/208 (45.67%), Query Frame = 3
Query:   96 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF------------QKVHGA--------DCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL-------WALDIAARRKPWIRSL 635
            DG+A +    P  VN L    VA L +       + D+K ++L  N   F  G DI  F            Q +H A        D   P                 +    R+A P  ++GLPE  LG++PGFGG+ R+PR++G   A+E++   K + +++  K+GL+D VV +E+L++ ++          LD  A+R+P +  L
Sbjct:   15 DGIAELVFDAPGSVNKLDTATVASLGEAIGVLEQQSDLKGLLLRSNKAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTIAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDVGADQALKIGLVDGVVKAEKLVEGAKAVLRQAINGDLDWKAKRQPKLEPL 222          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADB_ECO55 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain 55989 / EAEC) GN=fadB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 59/208 (28.37%), Postives = 95/208 (45.67%), Query Frame = 3
Query:   96 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF------------QKVHGA--------DCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL-------WALDIAARRKPWIRSL 635
            DG+A +    P  VN L    VA L +       + D+K ++L  N   F  G DI  F            Q +H A        D   P                 +    R+A P  ++GLPE  LG++PGFGG+ R+PR++G   A+E++   K + +++  K+GL+D VV +E+L++ ++          LD  A+R+P +  L
Sbjct:   15 DGIAELVFDAPGSVNKLDTATVASLGEAIGVLEQQSDLKGLLLRSNKAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTIAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDVGADQALKIGLVDGVVKAEKLVEGAKAVLRQAINGDLDWKAKRQPKLEPL 222          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADB_ECO45 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=fadB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 60/208 (28.85%), Postives = 94/208 (45.19%), Query Frame = 3
Query:   96 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF------------QKVHGA--------DCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL-------LKVSRLWALDIAARRKPWIRSL 635
            DG+A +    P  VN L    VA L +       + D+K ++L  N   F  G DI  F            Q +H A        D   P                 +    R+A P  ++GLPE  LG++PGFGG+ R+PR++G   A+E++   K + +++  K+GL+D VV +E+L       L+ +    LD  A+R+P +  L
Sbjct:   15 DGIAELVFDTPGSVNKLDTATVASLGEAIGVLEQQSDLKGLLLRSNKAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTIAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDVGADQALKIGLVDGVVKAEKLVEGAIAILRQAINGDLDWKAKRQPKLEPL 222          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADJ_SALPK (Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi A (strain AKU_12601) GN=fadJ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 60/208 (28.85%), Postives = 96/208 (46.15%), Query Frame = 3
Query:   81 MEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 635
            + V  D VA++ +  P   VN L     A ++   ++      ++ +V ++     F  G DIN+      A   +                  P+                + CH RI     KT LGLPE+ LG++PG GGTQRLPRLVG+S A++M+L+ K + + +  K GL+D VV    LL+     A+++A + +   R+L
Sbjct:    9 LNVRLDNVAVVAIDVPGEKVNTLKAEFAAQVRAILKQIRENKALQGVVFISAKADNFIAGADINIIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILIGKQLRARQALKAGLVDDVVPQTILLEA----AVELAKKERLAQRTL 212          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADJ_SALPA (Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi A GN=fadJ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 60/208 (28.85%), Postives = 96/208 (46.15%), Query Frame = 3
Query:   81 MEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSGGFDINVFQKVHGADCKK------------------PIXXXXXXXXXXXXXXXXMGCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 635
            + V  D VA++ +  P   VN L     A ++   ++      ++ +V ++     F  G DIN+      A   +                  P+                + CH RI     KT LGLPE+ LG++PG GGTQRLPRLVG+S A++M+L+ K + + +  K GL+D VV    LL+     A+++A + +   R+L
Sbjct:    9 LNVRLDNVAVVAIDVPGEKVNTLKAEFAAQVRAILKQIRENKALQGVVFISAKADNFIAGADINIIGHCQNAQEAETLARQGQQLMAEIQALPVPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILIGKQLRARQALKAGLVDDVVPQTILLEA----AVELAKKERLAQRTL 212          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADB_KLEP3 (Fatty acid oxidation complex subunit alpha OS=Klebsiella pneumoniae (strain 342) GN=fadB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 61/208 (29.33%), Postives = 94/208 (45.19%), Query Frame = 3
Query:   96 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF------------QKVHGA--------DCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL-------LKVSRLWALDIAARRKPWIRSL 635
            DG+A +    P  VN L    VA L    +    ++D+K ++L      F  G DI  F            Q +H A        D   P                 +    R+A P  ++GLPE  LG++PGFGG+ RLPRL+G   A+E++   K + +++  K+GL+D VV +E+L       L+ +    LD  A+R+P +  L
Sbjct:   15 DGIAELVFDAPGSVNKLDTATVASLGHALDVLEKQNDLKGLLLRSEKAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTISAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIAAGKDVGADQALKIGLVDGVVAAEKLRDGALAILRQAINGDLDWKAKRQPKLEPL 222          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADB_ECOSM (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=fadB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 61/218 (27.98%), Postives = 99/218 (45.41%), Query Frame = 3
Query:   96 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF------------QKVHGA--------DCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL-------LKVSRLWALDIAARRKPWIRSLHRTDKLGSLS 665
            DG+A +    P  VN L    VA L +       + D+K ++L  N   F  G DI  F            Q +H A        D   P                 +    R+A P  ++GLPE  LG++PGFGG+ R+PR++G   A+E++   K + +++  K+GL+D VV +E+L       L+ +    LD  A+R+P +  L  ++   ++S
Sbjct:   15 DGIAELVFDAPGSVNKLDTATVASLGEAIGVLEQQSDLKGLLLRSNKAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTIAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDVGADQALKIGLVDGVVKAEKLIEGAMAILRQAINGDLDWKAKRQPKLEPLKLSEIEATMS 232          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: FADB_CITK8 (Fatty acid oxidation complex subunit alpha OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=fadB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 61/208 (29.33%), Postives = 93/208 (44.71%), Query Frame = 3
Query:   96 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF------------QKVHGA--------DCKKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL-------LKVSRLWALDIAARRKPWIRSL 635
            DG+A +    P  VN L    VA L    +    + D+K ++L  N   F  G DI  F            Q +H A        D   P                 +    R+  P  ++GLPE  LG++PGFGG+ R+PR++G   A+E++   K I +E+  K+GL+D VV  E+L       L+ +   +LD  A+R+P +  L
Sbjct:   15 DGIAELVFDAPGSVNKLDTATVASLGQALDVLEKQTDLKGLLLRSNKAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTLSAINGYALGGGCECVLATDYRLVTPDLRIGLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDIGAEQALKIGLVDGVVKPEKLLDGAIAVLRQAIDGSLDWKAKRQPKLEPL 222          
BLAST of FC925337 vs. ExPASy Swiss-Prot
Match: ECHA8_MYCTU (Probable enoyl-CoA hydratase echA8 OS=Mycobacterium tuberculosis GN=echA8 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 55/184 (29.89%), Postives = 87/184 (47.28%), Query Frame = 3
Query:  102 VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGADC---------------KKPIXXXXXXXXXXXXXXXXMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA 605
            V IITL  P  +NAL   ++  +     E     D+ AI++TG+   F+ G DI     +  AD                + P                 M C   IAA   + G PE+ LGV+PG GG+QRL R +G +KA++++L  +++ + E  + GL+  VV +++LL  +R  A  I+
Sbjct:   14 VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTIS 197          
The following BLAST results are available for this feature:
BLAST of FC925337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
FADB_ECOBW3.038e-1528.37Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADB_ECO8A3.038e-1528.37Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADB_ECO553.038e-1528.37Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADB_ECO453.038e-1528.85Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_SALPK3.967e-1528.85Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALPA3.967e-1528.85Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADB_KLEP33.967e-1529.33Fatty acid oxidation complex subunit alpha OS=Kleb... [more]
FADB_ECOSM3.967e-1527.98Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADB_CITK83.967e-1529.33Fatty acid oxidation complex subunit alpha OS=Citr... [more]
ECHA8_MYCTU3.967e-1529.89Probable enoyl-CoA hydratase echA8 OS=Mycobacteriu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH20FM1 TF Citrus clementina cDNA clone KN0AAP8YH20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925337 ID=FC925337; Name=FC925337; organism=Citrus clementina; type=EST; length=672bp
TTCGGATTGATATTAAAATCTCCACTAAAAGAAATAATTGATAATAATAA
CAGTAAGCCATGGCAGCACCGCGAGTGACGATGGAAGTCGGAAACGACGG
CGTTGCGATCATCACTTTGATTAATCCTCCCGTGAACGCCTTAGCTATTC
CAATTGTTGCCGGATTGAAGGACAAGTTTGAGGAGGCCACGAGCCGAGAC
GACGTTAAGGCTATTGTTCTGACTGGCAATGGTGGAAGGTTTTCTGGCGG
TTTCGACATAAATGTTTTTCAGAAGGTTCACGGGGCTGATTGCAAGAAGC
CCATTGTTGCAGCTGTGGAGGGGTTAGCCCTTGGAGGTGGCTTAGAATTG
GCAATGGGATGCCATGCACGTATTGCTGCTCCAAAGACTCAACTTGGCTT
GCCTGAGCTGACACTAGGGGTAATTCCAGGTTTTGGAGGCACACAACGTC
TACCAAGGCTGGTGGGCCTCTCAAAGGCTATTGAAATGATGCTGTTATCT
AAATCAATCACGTCTGAGGAGGGCTGGAAGCTGGGTCTAATTGATGCTGT
TGTGACTTCTGAAGAGTTGCTGAAAGTATCTCGACTCTGGGCTTTAGACA
TTGCAGCAAGGCGCAAACCATGGATACGTTCCCTTCACAGGACAGACAAA
CTTGGTTCTCTTTCTGAAGCAA
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