FC925341

Overview
NameFC925341
Unique NameFC925341
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7036 contig Ccv1_Contig7036:106..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925341 vs. ExPASy Swiss-Prot
Match: FADH_METMR (S-(hydroxymethyl)glutathione dehydrogenase OS=Methylobacter marinus GN=fdh PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 55/170 (32.35%), Postives = 75/170 (44.12%), Query Frame = 2
Query:  140 LKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTD--RGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFGLGAV 643
            +KI  T++C +D++ ++    T     I GHE  G V  VG  VT L+ GD V+  FT  C  C  C     + CD    N D  R  M +     F           G + +       VG + KI    P DKV  LS    TG+ A  N A+ + G TVA++G G V
Sbjct:   30 VKITATAICGSDLHLYDGYMPTMESGDILGHEPMGEVVEVGSEVTSLKTGDRVVVPFTISCGHCFFCEKTLYSCCDTSNPNADMARKAMGHSPAGIFGYSHMLGGFAGGQAEYLRVPYADVGPI-KITSDLPDDKVLFLSDIFPTGYMAAEN-AQIEPGDTVAVWGCGPV 197          
BLAST of FC925341 vs. ExPASy Swiss-Prot
Match: CADH7_ARATH (Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis thaliana GN=CAD7 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 45/178 (25.28%), Postives = 72/178 (40.45%), Query Frame = 2
Query:  125 KNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFGLGAVGLAA 655
            + +VR K+LF  +CHTD+   + +     +P + GHE  G+V  VG  V     GD V +    G C+ C  C+  + N C  +        ++  G   F          +    +S++ V     + +I    PLD    L C   T +         K G  + + GLG +G  A
Sbjct:   33 EKDVRFKVLFCGICHTDLSMAKNEWGLTTYPLVPGHEIVGVVTEVGAKVKKFNAGDKVGVGYMAGSCRSCDSCNDGDENYCPKM--------ILTSGAKNFD-------DTMTHGGYSDHMVCAEDFIIRIPDNLPLDGAAPLLCAGVTVYSPMKYHGLDKPGMHIGVVGLGGLGHVA 195          
BLAST of FC925341 vs. ExPASy Swiss-Prot
Match: ADHC_MYCTU (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium tuberculosis GN=adhC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 55/197 (27.92%), Postives = 80/197 (40.61%), Query Frame = 2
Query:   59 AAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFGLGAVG 646
            A  A  A +PL    +    P  ++V + I F  +CH+D++  +A+   P +P + GHE  G+V +VG  VT  + GD V +  F   C+EC  C       C     N     +  DGQ                  +SE  V     V +I    PLD    L C   T + + +          VAI GLG +G
Sbjct:    6 AYAAMSATEPLTKTTITRRDPGPHDVAIDIKFAGICHSDIHTVKAEWGQPNYPVVPGHEIAGVVTAVGSEVTKYRQGDRVGVGCFVDSCRECNSCTRGIEQYCK-PGANFTYNSIGKDGQPT-------------QGGYSEAIVVDENYVLRIPDVLPLDVAAPLLCAGITLY-SPLRHWNAGANTRVAIIGLGGLG 187          
BLAST of FC925341 vs. ExPASy Swiss-Prot
Match: ADHC_MYCBO (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium bovis GN=adhC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 55/197 (27.92%), Postives = 80/197 (40.61%), Query Frame = 2
Query:   59 AAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFGLGAVG 646
            A  A  A +PL    +    P  ++V + I F  +CH+D++  +A+   P +P + GHE  G+V +VG  VT  + GD V +  F   C+EC  C       C     N     +  DGQ                  +SE  V     V +I    PLD    L C   T + + +          VAI GLG +G
Sbjct:    6 AYAAMSATEPLTKTTITRRDPGPHDVAIDIKFAGICHSDIHTVKAEWGQPNYPVVPGHEIAGVVTAVGSEVTKYRQGDRVGVGCFVDSCRECNSCTRGIEQYCK-PGANFTYNSIGKDGQPT-------------QGGYSEAIVVDENYVLRIPDVLPLDVAAPLLCAGITLY-SPLRHWNAGANTRVAIIGLGGLG 187          
BLAST of FC925341 vs. ExPASy Swiss-Prot
Match: CADH9_ARATH (Probable cinnamyl alcohol dehydrogenase 9 OS=Arabidopsis thaliana GN=CAD9 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 47/178 (26.40%), Postives = 76/178 (42.70%), Query Frame = 2
Query:  125 KNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHV-LPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFGLGAVGLAA 655
            +N+V +KILF  +CHTD++  +       +P + GHE  GI   VG+ VT  + GD V + V +G C+ C  C  +  N C   +++     + +DG   +               +SE  V     V +     P D    L C   T +         + G+ + + GLG +G  A
Sbjct:   37 ENDVTVKILFCGVCHTDLHTIKNDWGYSYYPVVPGHEIVGIATKVGKNVTKFKEGDRVGVGVISGSCQSCESCDQDLENYCP--QMSFTYNAIGSDGTKNY-------------GGYSENIVVDQRFVLRFPENLPSDSGAPLLCAGITVYSPMKYYGMTEAGKHLGVAGLGGLGHVA 199          
The following BLAST results are available for this feature:
BLAST of FC925341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
FADH_METMR7.461e-1132.35S-(hydroxymethyl)glutathione dehydrogenase OS=Meth... [more]
CADH7_ARATH7.461e-1125.28Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis th... [more]
ADHC_MYCTU7.461e-1127.92NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
ADHC_MYCBO7.461e-1127.92NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
CADH9_ARATH9.744e-1126.40Probable cinnamyl alcohol dehydrogenase 9 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH22FM1 TF Citrus clementina cDNA clone KN0AAP8YH22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925341 ID=FC925341; Name=FC925341; organism=Citrus clementina; type=EST; length=659bp
AGTATCATCATTCATCATCAATATGTCTGGCACAGCTGGTCAAGTTATTC
GCTGCAAAGCGGCGGTGGCATGGGAGGCGGGGAAGCCACTAGTGATTGAA
GAAGTGGAGGTGGCTCCACCACAGAAAAATGAAGTTCGATTGAAGATCCT
CTTCACCTCTTTATGCCATACTGATGTTTACTTCTGGGAAGCCAAAGGAC
AAACACCTCTCTTTCCTCGCATTTTTGGTCATGAAGCTGGAGGGATTGTA
GAAAGTGTAGGGGAGGGGGTAACTGATCTCCAACCAGGAGACCATGTTCT
TCCTGTATTCACAGGAGAGTGCAAGGAATGTCCTCACTGTCATTCAGAGG
AAAGCAATATGTGTGACCTCCTCCGGATCAATACTGACAGGGGTGTTATG
ATTAATGATGGTCAGTCAAGGTTCTCGATTAAGGGGAAGCCAATTTACCA
TTTTGTGGGCACTTCTACCTTCAGTGAATACACTGTTACCCACGTCGGTT
GTGTTGCTAAGATCAATCCTGCTGCCCCTCTTGACAAAGTTTGTGTACTC
AGCTGCGGAATCTCCACAGGTTTTGGGGCTACTGTTAATGTTGCCAAACC
GAAAAAGGGCCAGACTGTTGCCATTTTTGGATTGGGTGCAGTTGGCCTTG
CTGCTGCCG
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