FC925341

Overview
NameFC925341
Unique NameFC925341
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7036 contig Ccv1_Contig7036:106..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925341 vs. ExPASy Swiss-Prot
Match: ADH4_HUMAN (Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE=1 SV=4)

HSP 1 Score: 233.032 bits (593), Expect = 1.027e-60
Identity = 115/212 (54.25%), Postives = 152/212 (71.70%), Query Frame = 2
Query:   29 GTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMC---DLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFGLGAVGLAA 655
            GT G+VI+CKAA+AWEAGKPL IEEVEVAPP+ +EVR++I+ TSLCHTD    ++K +   FP I GHEA GIVES+G GVT+++PGD V+P++   C++C  C S  +N+C     L+       ++ D  SRF+ KGKP+YHF GTSTFS+YTV     +AKI+  A L++VC+L CG STG+GA +N AK   G T A+FGLG VGL+A
Sbjct:    2 GTKGKVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFEGLAFPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLKSPASDQQLMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGCGFSTGYGAAINNAKVTPGSTCAVFGLGGVGLSA 213          
BLAST of FC925341 vs. ExPASy Swiss-Prot
Match: ADH1B_HUMAN (Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B PE=1 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 1.027e-60
Identity = 116/208 (55.77%), Postives = 148/208 (71.15%), Query Frame = 2
Query:   32 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFGLGAVGLAA 655
            TAG+VI+CKAAV WE  KP  IE+VEVAPP+  EVR+K++   +C TD +       TPL P I GHEA GIVESVGEGVT ++PGD V+P+FT +C +C  C + ESN C    +   RG +  DG  RF+ +GKPI+HF+GTSTFS+YTV     VAKI+ A+PL+KVC++ CG STG+G+ VNVAK   G T A+FGLG VGL+A
Sbjct:    3 TAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVTPL-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPRGTL-QDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSA 208          
BLAST of FC925341 vs. ExPASy Swiss-Prot
Match: ADH1_RABIT (Alcohol dehydrogenase 1 OS=Oryctolagus cuniculus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.341e-60
Identity = 114/207 (55.07%), Postives = 150/207 (72.46%), Query Frame = 2
Query:   32 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFGLGAVGLA 652
            TAG+VI+CKAAV W+  KP  IEEVEVAPP+ +EVR+K++ T +C +D +        PL P I GHEA GIVES+GEGVT ++PGD V+P+FT +C +C  C   ESN C +  +   +G+++ DG SRF+ KGKPI+HF+GTSTFS+YTV     VAKI+ AAPL+KVC++ CG STG+G+ V VAK   G T A+FGLG VGL+
Sbjct:    3 TAGKVIKCKAAVLWQLNKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHAVTGSIAVPL-PVILGHEAAGIVESIGEGVTTVKPGDKVIPLFTPQCGKCRICKHPESNFCLINDLGKPKGMLL-DGTSRFTCKGKPIHHFIGTSTFSQYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGSAVKVAKVTPGSTCAVFGLGGVGLS 207          
BLAST of FC925341 vs. ExPASy Swiss-Prot
Match: ADH1B_PAPHA (Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH1B PE=2 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 2.287e-60
Identity = 115/208 (55.29%), Postives = 147/208 (70.67%), Query Frame = 2
Query:   32 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFGLGAVGLAA 655
            TAG+VI+CKAAV WE  KP  IE+VEVAPP+  EVR+K++   +C TD +       +PL P I GHEA GIVESVGEGVT ++PGD V+P+FT +C +C  C S E N C    ++  RG +  DG  RF+ +GKPI+HFVGTSTFS+YTV     VAKI+ A+PL+KVC++ CG STG+G+ VNVAK   G   A+FGLG VGL+A
Sbjct:    3 TAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVSPL-PAILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKSPEGNYCVKNDLSNPRGTL-QDGTRRFTCRGKPIHHFVGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGSVCAVFGLGGVGLSA 208          
BLAST of FC925341 vs. ExPASy Swiss-Prot
Match: ADH1_ALLMI (Alcohol dehydrogenase 1 OS=Alligator mississippiensis PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 6.655e-60
Identity = 113/207 (54.59%), Postives = 145/207 (70.05%), Query Frame = 2
Query:   32 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFGLGAVGLA 652
            TAG+VI+CKAA+ WE  KP  IEE+EVAPP+ +EVR+KIL T +C +D +        PL P I GHEA G+VES GEGVT L+PGD V+P+F  +C EC  C     N+C    + +  G+M  DG SRF+ KGK I+HF+GTSTF+EYTV H   VA+I+ AAPL+KVC++ CG STG+GA V  AK + G T A+FGLG VGL+
Sbjct:    2 TAGKVIKCKAAITWEIKKPFSIEEIEVAPPKAHEVRIKILATGICRSDDHVTAGLLTMPL-PMILGHEAAGVVESTGEGVTSLKPGDKVIPLFVPQCGECMPCLKSNGNLCIRNDLGSPSGLMA-DGTSRFTCKGKDIHHFIGTSTFTEYTVVHETAVARIDAAAPLEKVCLIGCGFSTGYGAAVKDAKVEPGSTCAVFGLGGVGLS 206          
BLAST of FC925341 vs. ExPASy Swiss-Prot
Match: ADH1E_HORSE (Alcohol dehydrogenase E chain OS=Equus caballus PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 8.692e-60
Identity = 115/207 (55.56%), Postives = 149/207 (71.98%), Query Frame = 2
Query:   32 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFGLGAVGLA 652
            TAG+VI+CKAAV WE  KP  IEEVEVAPP+ +EVR+K++ T +C +D +       TPL P I GHEA GIVES+GEGVT ++PGD V+P+FT +C +C  C   E N C    ++  RG M  DG SRF+ +GKPI+HF+GTSTFS+YTV     VAKI+ A+PL+KVC++ CG STG+G+ V VAK  +G T A+FGLG VGL+
Sbjct:    3 TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPL-PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTM-QDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLS 207          
BLAST of FC925341 vs. ExPASy Swiss-Prot
Match: ADH1G_HUMAN (Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C PE=1 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 2.529e-59
Identity = 114/207 (55.07%), Postives = 145/207 (70.05%), Query Frame = 2
Query:   32 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFGLGAVGLA 652
            TAG+VI+CKAAV WE  KP  IEEVEVAPP+ +EVR+K++   +C +D +       TPL P I GHEA GIVESVGEGVT ++PGD V+P+FT +C +C  C + ESN C    +   RG +  DG  RF+  GKPI+HFVG STFS+YTV     VAKI+ A+PL+KVC++ CG STG+G+ V VAK   G T A+FGLG VGL+
Sbjct:    3 TAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDEHVVSGNLVTPL-PVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKNDLGNPRGTL-QDGTRRFTCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTPGSTCAVFGLGGVGLS 207          
BLAST of FC925341 vs. ExPASy Swiss-Prot
Match: ADH1_STRCA (Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH1 PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.303e-59
Identity = 115/207 (55.56%), Postives = 145/207 (70.05%), Query Frame = 2
Query:   32 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFGLGAVGLA 652
            TAG+VI+CKAAV WE  KP  IEEVEVAPP+ +EVR+KI+ T +C +D +        P FP I GHEA G+VESVGEGVT ++PGD V+P+F  +C EC  C S + N+C    I     +M  DG SRF+ KGK I+HF GTSTF+EYTV H   VAKI+ AAPL+KVC++ CG STG+GA +  AK + G T A+FGLG VGL+
Sbjct:    2 TAGKVIKCKAAVLWEPKKPFSIEEVEVAPPKAHEVRVKIIATGICRSDDHVISGVLVMP-FPIILGHEAAGVVESVGEGVTSVKPGDKVIPLFVPQCGECSVCLSTKGNLCRKNDIGPASALM-PDGTSRFTCKGKAIHHFAGTSTFTEYTVLHETAVAKIDAAAPLEKVCLIGCGFSTGYGAALQTAKVEPGSTCAVFGLGGVGLS 206          
BLAST of FC925341 vs. ExPASy Swiss-Prot
Match: ADH1_COTJA (Alcohol dehydrogenase 1 OS=Coturnix coturnix japonica GN=ADH1 PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.314e-59
Identity = 111/207 (53.62%), Postives = 147/207 (71.01%), Query Frame = 2
Query:   32 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFGLGAVGLA 652
            TAG+VI+CKAAV WEA KP  +EEVEVAPP+ +EVR+KI+ T +C +D +        P FP I GHEA G+VESVGE VT L+PGD V+P+F  +C EC  C S + N+C    +++    ++ DG +RF+ KGK I+HF+GTSTF+EYTV H    AKI+ AAPL+KVC++ CG STG+GA +  AK + G T A+FGLG VGL+
Sbjct:    2 TAGKVIKCKAAVLWEANKPFSLEEVEVAPPKAHEVRIKIVATGICRSDDHVVTGALAMP-FPVILGHEAAGVVESVGEKVTLLKPGDAVIPLFVPQCGECRSCLSTKGNLCIKNDLSSSPTGLMADGTTRFTCKGKAIHHFIGTSTFTEYTVVHETAAAKIDSAAPLEKVCLIGCGFSTGYGAVLQTAKVEPGSTCAVFGLGGVGLS 207          
BLAST of FC925341 vs. ExPASy Swiss-Prot
Match: ADH1_CHICK (Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 4.314e-59
Identity = 110/207 (53.14%), Postives = 146/207 (70.53%), Query Frame = 2
Query:   32 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFGLGAVGLA 652
            T G+VI+CKAAV WEA KP  +EEVEVAPP+ +EVR+KI+ T +C +D +        P FP I GHEA G++ESVGE VT L+PGD V+P+F  +C EC  C S + N+C    +++    ++ DG +RF+ KGK I+HFVGTSTF+EYTV H    AKI+ AAPL+KVC++ CG STG+GA +  AK + G T A+FGLG VGL+
Sbjct:    3 TVGKVIKCKAAVLWEANKPFSLEEVEVAPPKAHEVRIKIVATGICRSDDHVVTGALAMP-FPIILGHEAAGVIESVGEKVTSLKPGDAVIPLFVPQCGECRSCLSTKGNLCIKNDLSSSPTGLMADGTTRFTCKGKAIHHFVGTSTFTEYTVVHETAAAKIDSAAPLEKVCLIGCGFSTGYGAVLQTAKVEAGSTCAVFGLGGVGLS 208          
The following BLAST results are available for this feature:
BLAST of FC925341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
ADH4_HUMAN1.027e-6054.25Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE... [more]
ADH1B_HUMAN1.027e-6055.77Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B ... [more]
ADH1_RABIT1.341e-6055.07Alcohol dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]
ADH1B_PAPHA2.287e-6055.29Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH... [more]
ADH1_ALLMI6.655e-6054.59Alcohol dehydrogenase 1 OS=Alligator mississippien... [more]
ADH1E_HORSE8.692e-6055.56Alcohol dehydrogenase E chain OS=Equus caballus PE... [more]
ADH1G_HUMAN2.529e-5955.07Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C ... [more]
ADH1_STRCA3.303e-5955.56Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH... [more]
ADH1_COTJA4.314e-5953.62Alcohol dehydrogenase 1 OS=Coturnix coturnix japon... [more]
ADH1_CHICK4.314e-5953.14Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH22FM1 TF Citrus clementina cDNA clone KN0AAP8YH22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925341 ID=FC925341; Name=FC925341; organism=Citrus clementina; type=EST; length=659bp
AGTATCATCATTCATCATCAATATGTCTGGCACAGCTGGTCAAGTTATTC
GCTGCAAAGCGGCGGTGGCATGGGAGGCGGGGAAGCCACTAGTGATTGAA
GAAGTGGAGGTGGCTCCACCACAGAAAAATGAAGTTCGATTGAAGATCCT
CTTCACCTCTTTATGCCATACTGATGTTTACTTCTGGGAAGCCAAAGGAC
AAACACCTCTCTTTCCTCGCATTTTTGGTCATGAAGCTGGAGGGATTGTA
GAAAGTGTAGGGGAGGGGGTAACTGATCTCCAACCAGGAGACCATGTTCT
TCCTGTATTCACAGGAGAGTGCAAGGAATGTCCTCACTGTCATTCAGAGG
AAAGCAATATGTGTGACCTCCTCCGGATCAATACTGACAGGGGTGTTATG
ATTAATGATGGTCAGTCAAGGTTCTCGATTAAGGGGAAGCCAATTTACCA
TTTTGTGGGCACTTCTACCTTCAGTGAATACACTGTTACCCACGTCGGTT
GTGTTGCTAAGATCAATCCTGCTGCCCCTCTTGACAAAGTTTGTGTACTC
AGCTGCGGAATCTCCACAGGTTTTGGGGCTACTGTTAATGTTGCCAAACC
GAAAAAGGGCCAGACTGTTGCCATTTTTGGATTGGGTGCAGTTGGCCTTG
CTGCTGCCG
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