FC925341

Overview
NameFC925341
Unique NameFC925341
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7036 contig Ccv1_Contig7036:106..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC925341 vs. ExPASy Swiss-Prot
Match: FRMA_ECOLI (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain K12) GN=frmA PE=1 SV=3)

HSP 1 Score: 216.468 bits (550), Expect = 9.944e-56
Identity = 101/202 (50.00%), Postives = 140/202 (69.31%), Query Frame = 2 
Query:   47 IRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFGLGAVGLA 652
            ++ +AAVA+  GKPL I E++VAPP+K EV +K+  T +CHTD +         +FP + GHE  G+V  VGEGVT ++PGDHV+P++T EC EC  C S ++N+C  +R    +G+M  DG +RFS  G+P+YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK + G +VA+FGLGA+GLA
Sbjct:    1 MKSRAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLA 201
[Close]
BLAST of FC925341 vs. ExPASy Swiss-Prot
Match: FRMA_ECOLC (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=frmA PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 9.944e-56
Identity = 101/202 (50.00%), Postives = 140/202 (69.31%), Query Frame = 2 
Query:   47 IRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFGLGAVGLA 652
            ++ +AAVA+  GKPL I E++VAPP+K EV +K+  T +CHTD +         +FP + GHE  G+V  VGEGVT ++PGDHV+P++T EC EC  C S ++N+C  +R    +G+M  DG +RFS  G+P+YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK + G +VA+FGLGA+GLA
Sbjct:    1 MKSRAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLA 201
[Close]
BLAST of FC925341 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL5 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 9.944e-56
Identity = 101/202 (50.00%), Postives = 140/202 (69.31%), Query Frame = 2 
Query:   47 IRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFGLGAVGLA 652
            ++ +AAVA+  GKPL I E++VAPP+K EV +K+  T +CHTD +         +FP + GHE  G+V  VGEGVT ++PGDHV+P++T EC EC  C S ++N+C  +R    +G+M  DG +RFS  G+P+YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK + G +VA+FGLGA+GLA
Sbjct:    1 MKSRAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLA 201
[Close]
BLAST of FC925341 vs. ExPASy Swiss-Prot
Match: FRMA_ECOK1 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=frmA PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 9.944e-56
Identity = 101/202 (50.00%), Postives = 140/202 (69.31%), Query Frame = 2 
Query:   47 IRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFGLGAVGLA 652
            ++ +AAVA+  GKPL I E++VAPP+K EV +K+  T +CHTD +         +FP + GHE  G+V  VGEGVT ++PGDHV+P++T EC EC  C S ++N+C  +R    +G+M  DG +RFS  G+P+YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK + G +VA+FGLGA+GLA
Sbjct:    1 MKSRAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLA 201
[Close]
BLAST of FC925341 vs. ExPASy Swiss-Prot
Match: FRMA_ECOHS (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=frmA PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 9.944e-56
Identity = 101/202 (50.00%), Postives = 140/202 (69.31%), Query Frame = 2 
Query:   47 IRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFGLGAVGLA 652
            ++ +AAVA+  GKPL I E++VAPP+K EV +K+  T +CHTD +         +FP + GHE  G+V  VGEGVT ++PGDHV+P++T EC EC  C S ++N+C  +R    +G+M  DG +RFS  G+P+YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK + G +VA+FGLGA+GLA
Sbjct:    1 MKSRAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLA 201
[Close]
BLAST of FC925341 vs. ExPASy Swiss-Prot
Match: FRMA_ECO57 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O157:H7 GN=frmA PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 9.944e-56
Identity = 101/202 (50.00%), Postives = 140/202 (69.31%), Query Frame = 2 
Query:   47 IRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFGLGAVGLA 652
            ++ +AAVA+  GKPL I E++VAPP+K EV +K+  T +CHTD +         +FP + GHE  G+V  VGEGVT ++PGDHV+P++T EC EC  C S ++N+C  +R    +G+M  DG +RFS  G+P+YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK + G +VA+FGLGA+GLA
Sbjct:    1 MKSRAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLA 201
[Close]
BLAST of FC925341 vs. ExPASy Swiss-Prot
Match: FRMA_ECO24 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 9.944e-56
Identity = 101/202 (50.00%), Postives = 140/202 (69.31%), Query Frame = 2 
Query:   47 IRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFGLGAVGLA 652
            ++ +AAVA+  GKPL I E++VAPP+K EV +K+  T +CHTD +         +FP + GHE  G+V  VGEGVT ++PGDHV+P++T EC EC  C S ++N+C  +R    +G+M  DG +RFS  G+P+YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK + G +VA+FGLGA+GLA
Sbjct:    1 MKSRAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLA 201
[Close]
BLAST of FC925341 vs. ExPASy Swiss-Prot
Match: FADH_YEAST (S-(hydroxymethyl)glutathione dehydrogenase OS=Saccharomyces cerevisiae GN=SFA1 PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.299e-55
Identity = 105/210 (50.00%), Postives = 143/210 (68.10%), Query Frame = 2 
Query:   26 SGTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRF-SIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFGLGAVGLA 652
            + T G+ I+C AAVA++A KPL +EE+ V  P+ +EVR+KI +T++CHTD Y         LFP + GHE  GIVESVG+ V  ++PGDHV+ ++T EC +C  C S ++N+C  +R    +GVM  DG +RF + KG+ IYHF+G STFSEYTV     V  I+P APLD  C+L CG++TGFGA +  A  +KG TVA+FG G VGL+
Sbjct:    3 AATVGKPIKCIAAVAYDAKKPLSVEEITVDAPKAHEVRIKIEYTAVCHTDAYTLSGSDPEGLFPCVLGHEGAGIVESVGDDVITVKPGDHVIALYTAECGKCKFCTSGKTNLCGAVRATQGKGVM-PDGTTRFHNAKGEDIYHFMGCSTFSEYTVVADVSVVAIDPKAPLDAACLLGCGVTTGFGAALKTANVQKGDTVAVFGCGTVGLS 211
[Close]
BLAST of FC925341 vs. ExPASy Swiss-Prot
Match: FRMA_PASPI (S-(hydroxymethyl)glutathione dehydrogenase OS=Pasteurella piscicida GN=frmA PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.893e-55
Identity = 102/202 (50.50%), Postives = 139/202 (68.81%), Query Frame = 2 
Query:   47 IRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFGLGAVGLA 652
            ++ +AAVA+  G PL I E++VAPP+K EV +KI  T +CHTD Y         LFP + GHE  G+V  VGEGVT ++PGDHV+P++T EC EC  C S ++N+C  +R    +GVM  D  SRF + G+P+YH++G STFSEYTV     +AKINP A  ++VC+L CG++TG GA  N AK ++G +VA+FGLG +GLA
Sbjct:    1 MKSRAAVAFGPGLPLEIVEIDVAPPKKGEVLVKISHTGVCHTDAYTLSGDDPEGLFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECDFCTSGKTNLCVAVRETQGKGVM-PDATSRFFVNGQPLYHYMGCSTFSEYTVVAEVSLAKINPQANAEQVCLLGCGVTTGIGAVHNTAKVQEGDSVAVFGLGGIGLA 201
[Close]
BLAST of FC925341 vs. ExPASy Swiss-Prot
Match: FRMA_SYNY3 (S-(hydroxymethyl)glutathione dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=frmA PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.779e-55
Identity = 104/202 (51.49%), Postives = 138/202 (68.32%), Query Frame = 2 
Query:   47 IRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQTVAIFGLGAVGLA 652
            ++ +AAVA+E GKPL I E++VAPPQ+ EV +KI  T +CHTD +         LFP + GHE  GIV  VGEGVT +Q GDHV+P++T EC +C  C S ++N+C  +R    +GVM  DG SRFS  G+ +YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK + G +VA+FGLG +GLA
Sbjct:    1 MKSRAAVAFEVGKPLQIVEIDVAPPQQGEVLVKITHTGVCHTDAFTLSGDDPEGLFPVVLGHEGAGIVVEVGEGVTSVQLGDHVIPLYTAECGKCLFCRSGKTNLCVAVRATQGKGVM-PDGTSRFSYNGQSLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGGIGLA 201
The following BLAST results are available for this feature:
BLAST of FC925341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
FRMA_ECOLI9.944e-5650.00S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOLC9.944e-5650.00S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOL59.944e-5650.00S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOK19.944e-5650.00S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOHS9.944e-5650.00S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO579.944e-5650.00S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO249.944e-5650.00S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FADH_YEAST1.299e-5550.00S-(hydroxymethyl)glutathione dehydrogenase OS=Sacc... [more]
FRMA_PASPI2.893e-5550.50S-(hydroxymethyl)glutathione dehydrogenase OS=Past... [more]
FRMA_SYNY33.779e-5551.49S-(hydroxymethyl)glutathione dehydrogenase OS=Syne... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH22FM1 TF Citrus clementina cDNA clone KN0AAP8YH22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925341 ID=FC925341; Name=FC925341; organism=Citrus clementina; type=EST; length=659bp
AGTATCATCATTCATCATCAATATGTCTGGCACAGCTGGTCAAGTTATTC
GCTGCAAAGCGGCGGTGGCATGGGAGGCGGGGAAGCCACTAGTGATTGAA
GAAGTGGAGGTGGCTCCACCACAGAAAAATGAAGTTCGATTGAAGATCCT
CTTCACCTCTTTATGCCATACTGATGTTTACTTCTGGGAAGCCAAAGGAC
AAACACCTCTCTTTCCTCGCATTTTTGGTCATGAAGCTGGAGGGATTGTA
GAAAGTGTAGGGGAGGGGGTAACTGATCTCCAACCAGGAGACCATGTTCT
TCCTGTATTCACAGGAGAGTGCAAGGAATGTCCTCACTGTCATTCAGAGG
AAAGCAATATGTGTGACCTCCTCCGGATCAATACTGACAGGGGTGTTATG
ATTAATGATGGTCAGTCAAGGTTCTCGATTAAGGGGAAGCCAATTTACCA
TTTTGTGGGCACTTCTACCTTCAGTGAATACACTGTTACCCACGTCGGTT
GTGTTGCTAAGATCAATCCTGCTGCCCCTCTTGACAAAGTTTGTGTACTC
AGCTGCGGAATCTCCACAGGTTTTGGGGCTACTGTTAATGTTGCCAAACC
GAAAAAGGGCCAGACTGTTGCCATTTTTGGATTGGGTGCAGTTGGCCTTG
CTGCTGCCG
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