FC925342

Overview
NameFC925342
Unique NameFC925342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig467 contig Ccv1_Contig467:108..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX1_ARATH (Phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic OS=Arabidopsis thaliana GN=GPX1 PE=1 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 1.067e-51
Identity = 93/126 (73.81%), Postives = 107/126 (84.92%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            S+CGLT+SNY+ELS LY+KYK QG EILAFPCNQFG QEPG N +I++FACTRFKAEFPIFDKVDVNG + AP+Y+ LKS+ GG  G  IKWNF KFL+DK+G VVERY PTTSP  IEKDI+KLL
Sbjct:  109 SRCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGFQEPGSNSEIKQFACTRFKAEFPIFDKVDVNGPSTAPIYEFLKSNAGGFLGGLIKWNFEKFLIDKKGKVVERYPPTTSPFQIEKDIQKLL 234          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX7_ARATH (Putative glutathione peroxidase 7, chloroplastic OS=Arabidopsis thaliana GN=GPX7 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.820e-51
Identity = 94/125 (75.20%), Postives = 105/125 (84.00%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKL 377
            S+CGLT+SNY+ELSQLY+KYKNQG EILAFPCNQFG QEPG N +I++FACTRFKAEFPIFDKVDVNG + AP+YK LKS+ GG  GD IKWNF KFLVDK+G VVERY PTTSP  IE    KL
Sbjct:  106 SRCGLTSSNYSELSQLYEKYKNQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPSTAPIYKFLKSNAGGFLGDIIKWNFEKFLVDKKGKVVERYPPTTSPFQIEVPNSKL 230          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX8_ARATH (Probable glutathione peroxidase 8 OS=Arabidopsis thaliana GN=GPX8 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.055e-51
Identity = 88/126 (69.84%), Postives = 111/126 (88.10%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            S+CG+TNSNYTEL++LY++YK++GLEILAFPCNQFG +EPG N+QI +F CTRFK+EFPIF+K++VNG+NA+PLYK LK  K G+FGD I+WNF+KFLVDK G  V+RY PTTSPL++E DIK LL
Sbjct:   39 SKCGMTNSNYTELNELYNRYKDKGLEILAFPCNQFGDEEPGTNDQITDFVCTRFKSEFPIFNKIEVNGENASPLYKFLKKGKWGIFGDDIQWNFAKFLVDKNGQAVQRYYPTTSPLTLEHDIKNLL 164          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX3_ARATH (Probable glutathione peroxidase 3, mitochondrial OS=Arabidopsis thaliana GN=GPX3 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.628e-50
Identity = 91/126 (72.22%), Postives = 105/126 (83.33%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            S+CGLT+ NY E++ LY KYK QG EILAFPCNQFG+QEPG N +I+E  C  FKAEFPIFDK++VNG N  PLY  LK  KGGLFGD+IKWNF+KFLVD++GNVV+RYAPTTSPL IEKDI KLL
Sbjct:   78 SKCGLTHGNYKEMNILYAKYKTQGFEILAFPCNQFGSQEPGSNMEIKETVCNIFKAEFPIFDKIEVNGKNTCPLYNFLKEQKGGLFGDAIKWNFAKFLVDRQGNVVDRYAPTTSPLEIEKDIVKLL 203          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX2_ARATH (Probable glutathione peroxidase 2 OS=Arabidopsis thaliana GN=GPX2 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.104e-48
Identity = 89/126 (70.63%), Postives = 106/126 (84.13%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            S+CGLT++NY EL+ LY+KYK QGLEILAFPCNQF  QEPG+NE+IQ+  CTRFKAEFPIFDKVDVNG N APLYK+LK+ KGGL  D+IKWNF+KFLV  +G V++RY+P TSPL  EKDI+  L
Sbjct:   39 SKCGLTDANYKELNVLYEKYKEQGLEILAFPCNQFLGQEPGNNEEIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLLIDAIKWNFTKFLVSPDGKVLQRYSPRTSPLQFEKDIQTAL 164          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX1_HELAN (Glutathione peroxidase 1 OS=Helianthus annuus GN=GPXHA-1 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.059e-47
Identity = 84/126 (66.67%), Postives = 106/126 (84.13%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            S+CGLTN++Y EL+Q+Y KYK +G EILAFPCNQFG QEPG NE+I +F CT+FK+EFPIFDK+DVNG+NAAP+Y+ LK+   G+ G  I+WNFSKFLVDK G  V+ Y PTTSPL++E+DI+KLL
Sbjct:   39 SKCGLTNNSYDELNQIYLKYKEKGFEILAFPCNQFGQQEPGTNEEIVDFVCTKFKSEFPIFDKIDVNGENAAPVYEFLKTGFYGILGGDIQWNFSKFLVDKNGQPVDCYYPTTSPLTVERDIQKLL 164          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX5_ARATH (Probable glutathione peroxidase 5 OS=Arabidopsis thaliana GN=GPX5 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.650e-44
Identity = 81/126 (64.29%), Postives = 100/126 (79.37%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            S+CG T SNYT+L++LY KYK+QG  +LAFPCNQF +QEPG +E+  +FACTRFKAE+P+F KV VNG NAAP+YK LKS K    G  IKWNF+KFLV K+G V++RY  T SPLSI+KDI+K L
Sbjct:   44 SKCGFTESNYTQLTELYRKYKDQGFVVLAFPCNQFLSQEPGTSEEAHQFACTRFKAEYPVFQKVRVNGQNAAPVYKFLKSKKPSFLGSRIKWNFTKFLVGKDGQVIDRYGTTVSPLSIQKDIEKAL 169          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX4_ARATH (Probable glutathione peroxidase 4 OS=Arabidopsis thaliana GN=GPX4 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.112e-43
Identity = 81/127 (63.78%), Postives = 99/127 (77.95%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 383
            S+CG T +NYT+L++LY KYK+Q  EILAFPCNQF  QEPG +++  EFAC RFKAE+P+F KV VNG NAAP+YK LK+SK    G  IKWNF+KFLV K+G V++RY    +PLSIEKDIKK LE
Sbjct:   42 SKCGFTETNYTQLTELYRKYKDQDFEILAFPCNQFLYQEPGTSQEAHEFACERFKAEYPVFQKVRVNGQNAAPIYKFLKASKPTFLGSRIKWNFTKFLVGKDGLVIDRYGTMVTPLSIEKDIKKALE 168          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX2_CAEEL (Probable glutathione peroxidase R05H10.5 OS=Caenorhabditis elegans GN=R05H10.5 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.726e-39
Identity = 73/127 (57.48%), Postives = 92/127 (72.44%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 383
            SQCGLTNSNY +  +L D YK  GLE+LAFPCNQFG QEP     I  F   +FK E  +F K+DVNGDN APLYK LK  KGG   D+IKWNF+KFLV ++G+V++R++PTT P  ++KDI+  L+
Sbjct:   34 SQCGLTNSNYNQFKELLDVYKKDGLEVLAFPCNQFGGQEPSCEIDIAAFVADKFKFEPTLFQKIDVNGDNTAPLYKFLKQEKGGFLVDAIKWNFTKFLVGRDGHVIKRFSPTTEPKDMKKDIEAALQ 160          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX1_CAEEL (Probable glutathione peroxidase F26E4.12 OS=Caenorhabditis elegans GN=F26E4.12 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.073e-39
Identity = 72/126 (57.14%), Postives = 91/126 (72.22%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            SQCGLTN NYT+L +L D YK  GLE+LAFPCNQF  QEP     IQ F   +FK E  +F K+DVNGD  +PL+K LK+ KGG   D+IKWNF+KFLV ++G +++R+ PTT P  +EKDIK+ L
Sbjct:   34 SQCGLTNKNYTQLKELLDVYKKDGLEVLAFPCNQFAGQEPSCEIDIQAFVADKFKFEPTLFQKIDVNGDKQSPLFKFLKNEKGGFMFDAIKWNFTKFLVGRDGKIIKRFGPTTDPKDMEKDIKEAL 159          
The following BLAST results are available for this feature:
BLAST of FC925342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
GPX1_ARATH1.067e-5173.81Phospholipid hydroperoxide glutathione peroxidase ... [more]
GPX7_ARATH1.820e-5175.20Putative glutathione peroxidase 7, chloroplastic O... [more]
GPX8_ARATH4.055e-5169.84Probable glutathione peroxidase 8 OS=Arabidopsis t... [more]
GPX3_ARATH2.628e-5072.22Probable glutathione peroxidase 3, mitochondrial O... [more]
GPX2_ARATH1.104e-4870.63Probable glutathione peroxidase 2 OS=Arabidopsis t... [more]
GPX1_HELAN6.059e-4766.67Glutathione peroxidase 1 OS=Helianthus annuus GN=G... [more]
GPX5_ARATH1.650e-4464.29Probable glutathione peroxidase 5 OS=Arabidopsis t... [more]
GPX4_ARATH3.112e-4363.78Probable glutathione peroxidase 4 OS=Arabidopsis t... [more]
GPX2_CAEEL2.726e-3957.48Probable glutathione peroxidase R05H10.5 OS=Caenor... [more]
GPX1_CAEEL6.073e-3957.14Probable glutathione peroxidase F26E4.12 OS=Caenor... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH23FM1 TF Citrus clementina cDNA clone KN0AAP8YH23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925342 ID=FC925342; Name=FC925342; organism=Citrus clementina; type=EST; length=635bp
CATCACAGTGTGGCTTGACCAATTCAAACTACACTGAGCTGAGTCAGTTG
TACGACAAGTACAAGAATCAAGGCTTGGAGATTCTGGCCTTTCCTTGTAA
TCAGTTTGGAGCTCAAGAGCCAGGAGACAATGAACAGATTCAAGAATTTG
CATGCACTCGCTTTAAGGCTGAGTTTCCCATATTTGATAAGGTTGATGTT
AATGGTGATAATGCTGCTCCTTTATACAAGCATCTGAAATCCAGCAAAGG
TGGACTTTTTGGAGACAGCATCAAGTGGAACTTTTCCAAGTTCTTGGTGG
ATAAGGAGGGGAATGTTGTTGAGCGTTATGCCCCCACCACTAGCCCTCTG
AGCATTGAGAAGGATATAAAGAAACTTCTGGAGACTGCTTAACCGCTGCT
ACAACTTGCATGATCAGCTTCTTGCTAATAAAACTAGAGTATCATGCTGT
AGAAGCACTCTGGTGGAAATATATGTTTAGCTTTGTCTCAATATCTGTAG
ACATATAATGAAGTTTCCTAATGTCGAAATAAATTCAGTTGATAAGTGCT
TGGTTTGTATGTAATGAATGTTCCCAGTTTTTGTAATTCAAAATAAAAGG
TGCTTGGTGAGACTCTAAAAAAAAAAAAAAAAAAA
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