FC925342

Overview
NameFC925342
Unique NameFC925342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX1_PANTR (Glutathione peroxidase 1 OS=Pan troglodytes GN=GPX1 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.570e-13
Identity = 49/150 (32.67%), Postives = 72/150 (48.00%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS-------------------IKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            S  G T  +YT++++L  +   +GL +L FPCNQFG QE   NE+I       R    F+  F +F+K +VNG  A  L+  L+ +      D+                   + WNF KFLV  +G  + RY+     + IE DI+ LL
Sbjct:   45 SLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHTLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 194          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX5_CANFA (Epididymal secretory glutathione peroxidase OS=Canis familiaris GN=GPX5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.724e-13
Identity = 50/140 (35.71%), Postives = 71/140 (50.71%), Query Frame = 3
Query:    9 CGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSS---KGGLFGD------------SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 368
            CGLT + Y EL+ L ++ K  GL +L FPCNQFG Q PG+N +I       R    +   F +F+K DVNG+    ++  LK S      + G              I+WNF KFLV  +G  V R+   T   ++++DI
Sbjct:   73 CGLT-AQYPELNSLQEELKPLGLVVLGFPCNQFGKQGPGENSEILPGLKYVRPGRGYVPNFQLFEKGDVNGEKEQKVFTFLKLSCPHPSEVLGSFRHISWDPVKVHDIRWNFEKFLVGPDGVPVLRWFHRTPISTVKEDI 211          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX2_CALJA (Glutathione peroxidase 2 OS=Callithrix jacchus GN=GPX2 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.476e-13
Identity = 48/150 (32.00%), Postives = 72/150 (48.00%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            S  G T  ++T+L++L  ++  + L +L FPC+QFG QE   NE+I       R    ++  F +  K +VNG N  P++ +LK        D                    + WNF KFL+  EG    RY+ T   ++IE DIK+LL
Sbjct:   38 SLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCHQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPHDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLL 186          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX2_MACFU (Glutathione peroxidase 2 OS=Macaca fuscata fuscata GN=GPX2 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.666e-12
Identity = 48/151 (31.79%), Postives = 72/151 (47.68%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGD-------------------SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 383
            S  G T  ++T+L++L  ++  + L +L FPCNQFG QE   NE+I       R    ++  F +  K +VNG N  P++ +LK        D                    + WNF KFL+  E     RY+ T   ++IE DIK+LL+
Sbjct:   38 SLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPHDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEVEPFRRYSRTFPTINIEPDIKRLLK 187          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPXC_DIRIM (Glutathione peroxidase OS=Dirofilaria immitis PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.405e-11
Identity = 44/125 (35.20%), Postives = 61/125 (48.80%), Query Frame = 3
Query:   30 YTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQ-------IQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKS---SKGGLFGD------------SIKWNFSKFLVDKEGNVVERYAPT 338
            Y + + + +   N  L+ILAFPCNQF  QEP +N +       ++            IF KV+VNGD+  PLYK LK        + GD             I WNF KFL+DK+G+   R+ P+
Sbjct:   78 YNDFNPMLENNSNGTLKILAFPCNQFLLQEPAENHELLNGLKYVRPGNGWEPHGNMHIFGKVEVNGDDHHPLYKFLKEHCPQTVPIIGDRHQLMYNPIGTNDIIWNFEKFLIDKKGHPRYRFHPS 202          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX1_CEBAP (Glutathione peroxidase 1 OS=Cebus apella GN=GPX1 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 46/150 (30.67%), Postives = 69/150 (46.00%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS-------------------IKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            S  G T  +YT++++   +   +GL +L FPCN  G QE   NE+I       R    F+  F +F+K +VNG  A  L+  L+ +      D+                   + WNF KFLV  +G  + RY+     + IE DI+ LL
Sbjct:   45 SLUGTTVRDYTQMNEPQRRLGPRGLVVLGFPCNHSGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKGEVNGAGAHTLFAFLREALPAPSDDATALMIDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 194          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX1_CALJA (Glutathione peroxidase 1 OS=Callithrix jacchus GN=GPX1 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 46/150 (30.67%), Postives = 69/150 (46.00%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQI-QEFACTR----FKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDS-------------------IKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            S  G T  +YT++++   +   +GL +L FPCN  G QE   NE+I       R    F+  F +F+K +VNG  A  L+  L+ +      D+                   + WNF KFLV  +G  + RY+     + IE DI+ LL
Sbjct:   45 SLUGTTVRDYTQMNEPQRRLGPRGLVVLGFPCNHSGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKGEVNGAGAHTLFAFLREALPAPSDDATALMIDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 194          
The following BLAST results are available for this feature:
BLAST of FC925342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
GPX1_PANTR2.570e-1332.67Glutathione peroxidase 1 OS=Pan troglodytes GN=GPX... [more]
GPX5_CANFA5.724e-1335.71Epididymal secretory glutathione peroxidase OS=Can... [more]
GPX2_CALJA7.476e-1332.00Glutathione peroxidase 2 OS=Callithrix jacchus GN=... [more]
GPX2_MACFU1.666e-1231.79Glutathione peroxidase 2 OS=Macaca fuscata fuscata... [more]
GPXC_DIRIM2.405e-1135.20Glutathione peroxidase OS=Dirofilaria immitis PE=2... [more]
GPX1_CEBAP9.139e-1130.67Glutathione peroxidase 1 OS=Cebus apella GN=GPX1 P... [more]
GPX1_CALJA9.139e-1130.67Glutathione peroxidase 1 OS=Callithrix jacchus GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH23FM1 TF Citrus clementina cDNA clone KN0AAP8YH23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925342 ID=FC925342; Name=FC925342; organism=Citrus clementina; type=EST; length=635bp
CATCACAGTGTGGCTTGACCAATTCAAACTACACTGAGCTGAGTCAGTTG
TACGACAAGTACAAGAATCAAGGCTTGGAGATTCTGGCCTTTCCTTGTAA
TCAGTTTGGAGCTCAAGAGCCAGGAGACAATGAACAGATTCAAGAATTTG
CATGCACTCGCTTTAAGGCTGAGTTTCCCATATTTGATAAGGTTGATGTT
AATGGTGATAATGCTGCTCCTTTATACAAGCATCTGAAATCCAGCAAAGG
TGGACTTTTTGGAGACAGCATCAAGTGGAACTTTTCCAAGTTCTTGGTGG
ATAAGGAGGGGAATGTTGTTGAGCGTTATGCCCCCACCACTAGCCCTCTG
AGCATTGAGAAGGATATAAAGAAACTTCTGGAGACTGCTTAACCGCTGCT
ACAACTTGCATGATCAGCTTCTTGCTAATAAAACTAGAGTATCATGCTGT
AGAAGCACTCTGGTGGAAATATATGTTTAGCTTTGTCTCAATATCTGTAG
ACATATAATGAAGTTTCCTAATGTCGAAATAAATTCAGTTGATAAGTGCT
TGGTTTGTATGTAATGAATGTTCCCAGTTTTTGTAATTCAAAATAAAAGG
TGCTTGGTGAGACTCTAAAAAAAAAAAAAAAAAAA
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