FC925342

Overview
NameFC925342
Unique NameFC925342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig467 contig Ccv1_Contig467:108..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: BSAA_BACHD (Glutathione peroxidase homolog bsaA OS=Bacillus halodurans GN=bsaA PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.119e-35
Identity = 70/126 (55.56%), Postives = 92/126 (73.02%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            S+CGLT   Y EL  LY+ YK+QG  +L FP NQF  QEPGD+ +I  F    +   FPIF+KV VNG  A PL+++L S +GGLF + IKWNF+KFL+D+ GNVV+RYAP+TSP+ I+ DI++LL
Sbjct:   33 SKCGLT-PQYEELQILYETYKDQGFTVLGFPSNQFMNQEPGDHNEIAAFCERNYGVSFPIFEKVKVNGKEAHPLFQYLTSQQGGLFTEKIKWNFTKFLIDRSGNVVKRYAPSTSPIKIKDDIEELL 157          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: BSAA_BACSU (Glutathione peroxidase homolog bsaA OS=Bacillus subtilis GN=bsaA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.920e-33
Identity = 69/128 (53.91%), Postives = 88/128 (68.75%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFG-DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 383
            S+CG T S   +L +LYD Y+ +GLEIL FPCNQF  QEPG+   IQEF  T +   FP+F KVDVNG NA PL+ +L     G+ G  +IKWNF+KF+VD+ G +V RY+P T+P  +E DI KLLE
Sbjct:   33 SKCGFT-SQLKQLQELYDTYQQEGLEILGFPCNQFMNQEPGEEADIQEFCETNYGVTFPMFSKVDVNGKNAHPLFVYLTEHAKGMLGTKAIKWNFTKFIVDRNGEIVGRYSPNTNPKELEDDIVKLLE 159          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPO_LACLA (Glutathione peroxidase OS=Lactococcus lactis subsp. lactis GN=gpo PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 4.980e-33
Identity = 65/126 (51.59%), Postives = 87/126 (69.05%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            S+CG T   +  L +LY+ YK+QGLEIL FPCNQF  Q+ G+N +I EF    +   FP+F K+ VNG  A PLY+ LK    G    +IKWNF+KFL+D+EGNV+ER+AP T P  +E++I+KLL
Sbjct:   33 SKCGFT-PQFEGLEKLYENYKDQGLEILGFPCNQFVNQDAGENSEINEFCQLNYGVTFPMFQKIKVNGKEAHPLYQFLKKEAKGALSGTIKWNFTKFLIDREGNVIERFAPKTEPKEMEEEIQKLL 157          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: BSAA_STAAW (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain MW2) GN=bsaA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.980e-33
Identity = 63/126 (50.00%), Postives = 89/126 (70.63%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            S+CG T S +  L  LY+KYK+QG  IL FPCNQFG QEPG  E+  +     +   FP+  K+DV G++  PL+++L +++ G F + IKWNF+KFLVD+EGNVV+R+AP   P+ IE++I+KLL
Sbjct:   34 SECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKLL 158          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: BSAA_STAAS (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain MSSA476) GN=bsaA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.980e-33
Identity = 63/126 (50.00%), Postives = 89/126 (70.63%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            S+CG T S +  L  LY+KYK+QG  IL FPCNQFG QEPG  E+  +     +   FP+  K+DV G++  PL+++L +++ G F + IKWNF+KFLVD+EGNVV+R+AP   P+ IE++I+KLL
Sbjct:   34 SECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKLL 158          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: BSAA_STAAR (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain MRSA252) GN=bsaA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.980e-33
Identity = 63/126 (50.00%), Postives = 89/126 (70.63%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            S+CG T S +  L  LY+KYK+QG  IL FPCNQFG QEPG  E+  +     +   FP+  K+DV G++  PL+++L +++ G F + IKWNF+KFLVD+EGNVV+R+AP   P+ IE++I+KLL
Sbjct:   34 SECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKLL 158          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: BSAA_STAAN (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain N315) GN=bsaA PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.980e-33
Identity = 63/126 (50.00%), Postives = 89/126 (70.63%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            S+CG T S +  L  LY+KYK+QG  IL FPCNQFG QEPG  E+  +     +   FP+  K+DV G++  PL+++L +++ G F + IKWNF+KFLVD+EGNVV+R+AP   P+ IE++I+KLL
Sbjct:   34 SECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKLL 158          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: BSAA_STAAM (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=bsaA PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.980e-33
Identity = 63/126 (50.00%), Postives = 89/126 (70.63%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            S+CG T S +  L  LY+KYK+QG  IL FPCNQFG QEPG  E+  +     +   FP+  K+DV G++  PL+++L +++ G F + IKWNF+KFLVD+EGNVV+R+AP   P+ IE++I+KLL
Sbjct:   34 SECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKLL 158          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: BSAA_STAAC (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain COL) GN=bsaA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.980e-33
Identity = 63/126 (50.00%), Postives = 89/126 (70.63%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            S+CG T S +  L  LY+KYK+QG  IL FPCNQFG QEPG  E+  +     +   FP+  K+DV G++  PL+++L +++ G F + IKWNF+KFLVD+EGNVV+R+AP   P+ IE++I+KLL
Sbjct:   34 SECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFNEKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKLL 158          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX2_YEAST (Glutathione peroxidase 2 OS=Saccharomyces cerevisiae GN=GPX2 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.494e-33
Identity = 68/127 (53.54%), Postives = 86/127 (67.72%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFG-DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            S+CG T   Y EL +LY KY+++G  IL FPCNQFG QEPG +EQI EF    +   FPI  K+DVNG NA  +Y +LKS K GL G   IKWNF KFLVD  G VV+R++  T P S++++I+ LL
Sbjct:   35 SKCGFT-PQYKELEELYKKYQDKGFVILGFPCNQFGKQEPGSDEQITEFCQLNYGVTFPIMKKIDVNGSNADSVYNYLKSQKAGLLGFKGIKWNFEKFLVDSNGKVVQRFSSLTKPSSLDQEIQSLL 160          
The following BLAST results are available for this feature:
BLAST of FC925342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
BSAA_BACHD3.119e-3555.56Glutathione peroxidase homolog bsaA OS=Bacillus ha... [more]
BSAA_BACSU2.920e-3353.91Glutathione peroxidase homolog bsaA OS=Bacillus su... [more]
GPO_LACLA4.980e-3351.59Glutathione peroxidase OS=Lactococcus lactis subsp... [more]
BSAA_STAAW4.980e-3350.00Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAS4.980e-3350.00Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAR4.980e-3350.00Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAN4.980e-3350.00Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAM4.980e-3350.00Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAC4.980e-3350.00Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
GPX2_YEAST8.494e-3353.54Glutathione peroxidase 2 OS=Saccharomyces cerevisi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YH23FM1 TF Citrus clementina cDNA clone KN0AAP8YH23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925342 ID=FC925342; Name=FC925342; organism=Citrus clementina; type=EST; length=635bp
CATCACAGTGTGGCTTGACCAATTCAAACTACACTGAGCTGAGTCAGTTG
TACGACAAGTACAAGAATCAAGGCTTGGAGATTCTGGCCTTTCCTTGTAA
TCAGTTTGGAGCTCAAGAGCCAGGAGACAATGAACAGATTCAAGAATTTG
CATGCACTCGCTTTAAGGCTGAGTTTCCCATATTTGATAAGGTTGATGTT
AATGGTGATAATGCTGCTCCTTTATACAAGCATCTGAAATCCAGCAAAGG
TGGACTTTTTGGAGACAGCATCAAGTGGAACTTTTCCAAGTTCTTGGTGG
ATAAGGAGGGGAATGTTGTTGAGCGTTATGCCCCCACCACTAGCCCTCTG
AGCATTGAGAAGGATATAAAGAAACTTCTGGAGACTGCTTAACCGCTGCT
ACAACTTGCATGATCAGCTTCTTGCTAATAAAACTAGAGTATCATGCTGT
AGAAGCACTCTGGTGGAAATATATGTTTAGCTTTGTCTCAATATCTGTAG
ACATATAATGAAGTTTCCTAATGTCGAAATAAATTCAGTTGATAAGTGCT
TGGTTTGTATGTAATGAATGTTCCCAGTTTTTGTAATTCAAAATAAAAGG
TGCTTGGTGAGACTCTAAAAAAAAAAAAAAAAAAA
back to top