FC925342

Overview
NameFC925342
Unique NameFC925342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX3_YEAST (Peroxiredoxin HYR1 OS=Saccharomyces cerevisiae GN=HYR1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.892e-32
Identity = 67/128 (52.34%), Postives = 86/128 (67.19%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFG-DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 383
            S+CG T   Y EL  LY +YK++G  I+ FPCNQFG QEPG +E+I +F    +   FPI  K+DVNG N  P+YK LKS K G+ G   IKWNF KFLVDK+G V ERY+  T P S+ + I++LL+
Sbjct:   34 SKCGFT-PQYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELLK 160          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX4_PONPY (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Pongo pygmaeus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.228e-32
Identity = 70/124 (56.45%), Postives = 89/124 (71.77%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 368
            SQ G T  NYT+L  L+ +Y   GL ILAFPCNQFG QEPG NE+I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   PL IEKD+
Sbjct:   71 SQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX4_HUMAN (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Homo sapiens GN=GPX4 PE=1 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 3.228e-32
Identity = 70/124 (56.45%), Postives = 89/124 (71.77%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 368
            SQ G T  NYT+L  L+ +Y   GL ILAFPCNQFG QEPG NE+I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   PL IEKD+
Sbjct:   71 SQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX4_MACFU (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Macaca fuscata fuscata GN=GPX4 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 9.392e-32
Identity = 69/124 (55.65%), Postives = 89/124 (71.77%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 368
            SQ G T  NYT+L  L+ +Y   G+ ILAFPCNQFG QEPG NE+I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   PL IEKD+
Sbjct:   71 SQUGKTEVNYTQLVDLHARYAECGVRILAFPCNQFGKQEPGSNEKIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX4_BOVIN (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Bos taurus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 9.392e-32
Identity = 69/124 (55.65%), Postives = 89/124 (71.77%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 368
            SQ G T+ NYT+L  L+ +Y   GL ILAFPCNQFG QEPG N +I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   PL IEKD+
Sbjct:   71 SQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNAEIKEFA-AGYNVKFDLFSKICVNGDDAHPLWKWMKVQPKGRGMLGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX4_CEBAP (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Cebus apella GN=GPX4 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.602e-31
Identity = 69/124 (55.65%), Postives = 88/124 (70.97%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 368
            SQ G T  NYT+L  L+ +Y   GL ILAFPCNQFG QEPG NE+I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL+DK G VV+RY P   P  IEKD+
Sbjct:   71 SQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPQVIEKDL 193          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPO_LACLM (Glutathione peroxidase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gpo PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.602e-31
Identity = 63/126 (50.00%), Postives = 85/126 (67.46%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            S+CG T   +  L +LY+ YK+QGLEIL FPCNQF  Q+ G+N +I EF    +   F +F K+ VNG  A PLY+ LK    G    +IKWNF+KFL+D++G V+ER+AP T P  +E++IKKLL
Sbjct:   33 SKCGFT-PQFEGLEKLYETYKDQGLEILGFPCNQFANQDAGENTEINEFCQLNYGVTFTMFQKIKVNGKEAHPLYQFLKKEAKGALSGTIKWNFTKFLIDRDGQVIERFAPKTEPEEMEEEIKKLL 157          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX4_CALJA (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Callithrix jacchus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.733e-31
Identity = 70/124 (56.45%), Postives = 87/124 (70.16%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 368
            SQ G T  NYT+L  L+ +Y   GL ILAFPCNQFG QEPG NE+I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G  G++IKWNF+KFLVDK G VV+RY P   P  IEKD+
Sbjct:   71 SQUGKTQVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGTLGNAIKWNFTKFLVDKNGCVVKRYGPMEEPQVIEKDL 193          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX1_SCHMA (Glutathione peroxidase OS=Schistosoma mansoni GN=GPX1 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.733e-31
Identity = 62/124 (50.00%), Postives = 87/124 (70.16%), Query Frame = 3
Query:   12 GLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 383
            G T+ NY +L +++ +   +GL ILAFPCNQFG QEP    +I++F   ++  +F +F K+ VNG +A  LYK LKS + G   ++IKWNFSKFLVD++G  V+RY+PTT+P  IE DI +LLE
Sbjct:   44 GATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELLE 167          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX4_HYLLA (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Hylobates lar GN=GPX4 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.661e-31
Identity = 68/124 (54.84%), Postives = 87/124 (70.16%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLK-SSKG-GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 368
            SQ G T  NYT+L  L+ +Y   GL  LAFPCNQFG QEPG NE+I+EFA   +  +F +F K+ VNGD+A PL+K +K   KG G+ G++IKWNF+KFL DK G VV+RY P   PL +EKD+
Sbjct:   71 SQUGKTEVNYTQLVDLHARYAECGLRFLAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLFDKNGCVVKRYGPMEEPLVLEKDL 193          
The following BLAST results are available for this feature:
BLAST of FC925342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
GPX3_YEAST1.892e-3252.34Peroxiredoxin HYR1 OS=Saccharomyces cerevisiae GN=... [more]
GPX4_PONPY3.228e-3256.45Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_HUMAN3.228e-3256.45Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_MACFU9.392e-3255.65Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_BOVIN9.392e-3255.65Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_CEBAP1.602e-3155.65Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPO_LACLM1.602e-3150.00Glutathione peroxidase OS=Lactococcus lactis subsp... [more]
GPX4_CALJA2.733e-3156.45Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX1_SCHMA2.733e-3150.00Glutathione peroxidase OS=Schistosoma mansoni GN=G... [more]
GPX4_HYLLA4.661e-3154.84Phospholipid hydroperoxide glutathione peroxidase,... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH23FM1 TF Citrus clementina cDNA clone KN0AAP8YH23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925342 ID=FC925342; Name=FC925342; organism=Citrus clementina; type=EST; length=635bp
CATCACAGTGTGGCTTGACCAATTCAAACTACACTGAGCTGAGTCAGTTG
TACGACAAGTACAAGAATCAAGGCTTGGAGATTCTGGCCTTTCCTTGTAA
TCAGTTTGGAGCTCAAGAGCCAGGAGACAATGAACAGATTCAAGAATTTG
CATGCACTCGCTTTAAGGCTGAGTTTCCCATATTTGATAAGGTTGATGTT
AATGGTGATAATGCTGCTCCTTTATACAAGCATCTGAAATCCAGCAAAGG
TGGACTTTTTGGAGACAGCATCAAGTGGAACTTTTCCAAGTTCTTGGTGG
ATAAGGAGGGGAATGTTGTTGAGCGTTATGCCCCCACCACTAGCCCTCTG
AGCATTGAGAAGGATATAAAGAAACTTCTGGAGACTGCTTAACCGCTGCT
ACAACTTGCATGATCAGCTTCTTGCTAATAAAACTAGAGTATCATGCTGT
AGAAGCACTCTGGTGGAAATATATGTTTAGCTTTGTCTCAATATCTGTAG
ACATATAATGAAGTTTCCTAATGTCGAAATAAATTCAGTTGATAAGTGCT
TGGTTTGTATGTAATGAATGTTCCCAGTTTTTGTAATTCAAAATAAAAGG
TGCTTGGTGAGACTCTAAAAAAAAAAAAAAAAAAA
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