FC925342

Overview
NameFC925342
Unique NameFC925342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPXA_NEIMF (Glutathione peroxidase homolog OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=gpxA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.083e-27
Identity = 67/146 (45.89%), Postives = 88/146 (60.27%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK-----GGLFGD---------------SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            ++CGLT   Y  L +LY +Y  +GLEIL FPCNQF  Q P  + +I +    +F  +F IFDK++VNG N APLY +LKS K       LF D                IKWNF+KFLV+++G VVER+AP+ +P  IE DI+ LL
Sbjct:   33 TRCGLT-PQYEALQKLYAQYTAEGLEILDFPCNQFREQAPESSGEIAQVCMMKFGTKFKIFDKIEVNGANTAPLYAYLKSVKPQDKGNHLFKDFVLKLAALGEKRDEGDIKWNFTKFLVNRDGEVVERFAPSVTPEEIEADIRALL 177          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPXA_NEIMC (Glutathione peroxidase homolog OS=Neisseria meningitidis serogroup C GN=gpxA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.083e-27
Identity = 67/146 (45.89%), Postives = 88/146 (60.27%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK-----GGLFGD---------------SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            ++CGLT   Y  L +LY +Y  +GLEIL FPCNQF  Q P  + +I +    +F  +F IFDK++VNG N APLY +LKS K       LF D                IKWNF+KFLV+++G VVER+AP+ +P  IE DI+ LL
Sbjct:   33 TRCGLT-PQYEALQKLYAQYTAEGLEILDFPCNQFREQAPESSGEIAQVCMMKFGTKFKIFDKIEVNGANTAPLYAYLKSVKPQDKGNHLFKDFVLKLAALGEKRDEGDIKWNFTKFLVNRDGEVVERFAPSVTPEEIEADIRALL 177          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPXA_NEIMB (Glutathione peroxidase homolog OS=Neisseria meningitidis serogroup B GN=gpxA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.083e-27
Identity = 67/146 (45.89%), Postives = 88/146 (60.27%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK-----GGLFGD---------------SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            ++CGLT   Y  L +LY +Y  +GLEIL FPCNQF  Q P  + +I +    +F  +F IFDK++VNG N APLY +LKS K       LF D                IKWNF+KFLV+++G VVER+AP+ +P  IE DI+ LL
Sbjct:   33 TRCGLT-PQYEALQKLYAQYTAEGLEILDFPCNQFREQAPESSGEIAQVCMMKFGTKFKIFDKIEVNGANTAPLYAYLKSVKPQDKGNHLFKDFVLKLAALGEKRDEGDIKWNFTKFLVNRDGEVVERFAPSVTPEEIEADIRALL 177          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPXA_NEIMA (Glutathione peroxidase homolog OS=Neisseria meningitidis serogroup A GN=gpxA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.083e-27
Identity = 67/146 (45.89%), Postives = 88/146 (60.27%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSK-----GGLFGD---------------SIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            ++CGLT   Y  L +LY +Y  +GLEIL FPCNQF  Q P  + +I +    +F  +F IFDK++VNG N APLY +LKS K       LF D                IKWNF+KFLV+++G VVER+AP+ +P  IE DI+ LL
Sbjct:   33 TRCGLT-PQYEALQKLYAQYTAEGLEILDFPCNQFREQAPESSGEIAQVCMMKFGTKFKIFDKIEVNGANTAPLYAYLKSVKPQDKGNHLFKDFVLKLAALGEKRDEGDIKWNFTKFLVNRDGEVVERFAPSVTPEEIEADIRALL 177          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX1_YEAST (Glutathione peroxidase 1 OS=Saccharomyces cerevisiae GN=GPX1 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.414e-24
Identity = 58/127 (45.67%), Postives = 78/127 (61.42%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFG-DSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            S C  T   Y EL  LY+KYK+ GL I+AFPC QFG QE   +++I +F   ++   FPI  K+  NG    P+YK LK+S  G  G   IKWNF KF+VD+ G VV+R++  T PL +   I++LL
Sbjct:   34 SHCAFT-PQYKELEYLYEKYKSHGLVIVAFPCGQFGNQEFEKDKEINKFCQDKYGVTFPILHKIRCNGQKQDPVYKFLKNSVSGKSGIKMIKWNFEKFVVDRNGKVVKRFSCMTRPLELCPIIEELL 159          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX_ENCCU (Probable phospholipid hydroperoxide glutathione peroxidase OS=Encephalitozoon cuniculi GN=ECU02_0440 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.955e-22
Identity = 52/129 (40.31%), Postives = 79/129 (61.24%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKG--GLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLLE 383
            S C    SNY   + L DK+  +GL IL FPCNQ+  QE    E+I+     ++   F +FDKVDV G  A P+++HL ++K   G  G+ IKWNF+KFLVD++G VV+R+ P+      ++++ + +E
Sbjct:   40 SSCKFAESNYKSFAGLLDKFYRKGLRILLFPCNQYLGQESRPIEEIRGEVSKKYSDRFVVFDKVDVFGKGAHPVFRHLVNTKNGKGRLGNFIKWNFTKFLVDRKGCVVKRFGPSDIVKEDDENLLRSIE 168          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: BTUE_ECOLI (Vitamin B12 transport periplasmic protein btuE OS=Escherichia coli (strain K12) GN=btuE PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.834e-20
Identity = 48/135 (35.56%), Postives = 74/135 (54.81%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHL--------------------KSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSP 347
            S+CGLT   Y +L  +   + ++G  +L FPCNQF  QEPG +E+I+ +  T +   FP+F K++VNG+   PLY+ L                       +  L+ D I WNF KFLV ++G V++R++P  +P
Sbjct:   35 SKCGLT-PQYEQLENIQKAWVDRGFMVLGFPCNQFLEQEPGSDEEIKTYCTTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGKVIQRFSPDMTP 168          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX7_MOUSE (Glutathione peroxidase 7 OS=Mus musculus GN=Gpx7 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.702e-20
Identity = 50/122 (40.98%), Postives = 65/122 (53.28%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDI 368
            S+CG T+ NY  L QL          +LAFPCNQFG QEP  N +I+ FA   +   FP+F K+ V G  A P +K+L  +     G    WNF K+LVD +G VV  + PT     I+  I
Sbjct:   54 SECGFTDQNYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDTNREIENFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTQTS----GKEPTWNFWKYLVDPDGKVVGAWDPTVPVAEIKPRI 171          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX7_HUMAN (Glutathione peroxidase 7 OS=Homo sapiens GN=GPX7 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.407e-19
Identity = 49/126 (38.89%), Postives = 67/126 (53.17%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            S+CG T+ +Y  L QL          +LAFPCNQFG QEP  N++I+ FA   +   FP+F K+ V G  A P +K+L  +     G    WNF K+LV  +G VV  + PT S   +   I  L+
Sbjct:   55 SECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTS----GKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALV 176          
BLAST of FC925342 vs. ExPASy Swiss-Prot
Match: GPX7_BOVIN (Glutathione peroxidase 7 OS=Bos taurus GN=GPX7 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.407e-19
Identity = 49/126 (38.89%), Postives = 67/126 (53.17%), Query Frame = 3
Query:    3 SQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 380
            S+CG T+ +Y  L QL          +LAFPCNQFG QEP  N++I+ FA   +   FP+F K+ V G  A P +K+L  +     G    WNF K+LV  +G V+  + PT S   I   I  L+
Sbjct:   54 SECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLTETS----GKEPTWNFWKYLVAPDGKVIGAWDPTVSVEEIRPQITALV 175          
The following BLAST results are available for this feature:
BLAST of FC925342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
GPXA_NEIMF4.083e-2745.89Glutathione peroxidase homolog OS=Neisseria mening... [more]
GPXA_NEIMC4.083e-2745.89Glutathione peroxidase homolog OS=Neisseria mening... [more]
GPXA_NEIMB4.083e-2745.89Glutathione peroxidase homolog OS=Neisseria mening... [more]
GPXA_NEIMA4.083e-2745.89Glutathione peroxidase homolog OS=Neisseria mening... [more]
GPX1_YEAST9.414e-2445.67Glutathione peroxidase 1 OS=Saccharomyces cerevisi... [more]
GPX_ENCCU3.955e-2240.31Probable phospholipid hydroperoxide glutathione pe... [more]
BTUE_ECOLI2.834e-2035.56Vitamin B12 transport periplasmic protein btuE OS=... [more]
GPX7_MOUSE3.702e-2040.98Glutathione peroxidase 7 OS=Mus musculus GN=Gpx7 P... [more]
GPX7_HUMAN1.407e-1938.89Glutathione peroxidase 7 OS=Homo sapiens GN=GPX7 P... [more]
GPX7_BOVIN1.407e-1938.89Glutathione peroxidase 7 OS=Bos taurus GN=GPX7 PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH23FM1 TF Citrus clementina cDNA clone KN0AAP8YH23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925342 ID=FC925342; Name=FC925342; organism=Citrus clementina; type=EST; length=635bp
CATCACAGTGTGGCTTGACCAATTCAAACTACACTGAGCTGAGTCAGTTG
TACGACAAGTACAAGAATCAAGGCTTGGAGATTCTGGCCTTTCCTTGTAA
TCAGTTTGGAGCTCAAGAGCCAGGAGACAATGAACAGATTCAAGAATTTG
CATGCACTCGCTTTAAGGCTGAGTTTCCCATATTTGATAAGGTTGATGTT
AATGGTGATAATGCTGCTCCTTTATACAAGCATCTGAAATCCAGCAAAGG
TGGACTTTTTGGAGACAGCATCAAGTGGAACTTTTCCAAGTTCTTGGTGG
ATAAGGAGGGGAATGTTGTTGAGCGTTATGCCCCCACCACTAGCCCTCTG
AGCATTGAGAAGGATATAAAGAAACTTCTGGAGACTGCTTAACCGCTGCT
ACAACTTGCATGATCAGCTTCTTGCTAATAAAACTAGAGTATCATGCTGT
AGAAGCACTCTGGTGGAAATATATGTTTAGCTTTGTCTCAATATCTGTAG
ACATATAATGAAGTTTCCTAATGTCGAAATAAATTCAGTTGATAAGTGCT
TGGTTTGTATGTAATGAATGTTCCCAGTTTTTGTAATTCAAAATAAAAGG
TGCTTGGTGAGACTCTAAAAAAAAAAAAAAAAAAA
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