FC925344

Overview
NameFC925344
Unique NameFC925344
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10414 contig Ccv1_Contig10414:795..1256. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925344 vs. ExPASy Swiss-Prot
Match: CADH7_ORYSJ (Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa subsp. japonica GN=CAD7 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.476e-16
Identity = 39/52 (75.00%), Postives = 46/52 (88.46%), Query Frame = 3
Query:   48 ETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKS 203
            ETQEMIDFAA+H + ADIE+I AD VNTAMERLAK DVRYRFV+D+ NT++S
Sbjct:  327 ETQEMIDFAAEHGVAADIELIGADEVNTAMERLAKGDVRYRFVVDIGNTLRS 378          
BLAST of FC925344 vs. ExPASy Swiss-Prot
Match: CADH5_ORYSJ (Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.701e-15
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 3
Query:   57 EMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 200
            EMID AAKH + A+IEVI ADYVNTAMERLAKADVRYRFVID+ NT+K
Sbjct:  303 EMIDLAAKHGVTAEIEVIGADYVNTAMERLAKADVRYRFVIDIGNTLK 350          
BLAST of FC925344 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.901e-15
Identity = 40/50 (80.00%), Postives = 44/50 (88.00%), Query Frame = 3
Query:   48 ETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 197
            +TQEMI+ AAKH + ADIEVI AD VNTAMERLAKADVRYRFVIDV NT+
Sbjct:  311 DTQEMIELAAKHGVTADIEVIGADDVNTAMERLAKADVRYRFVIDVGNTL 360          
BLAST of FC925344 vs. ExPASy Swiss-Prot
Match: MTDH1_STYHU (Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.948e-15
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 3
Query:   45 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKST 206
            KETQEM+DF  KHNI A+IE+I  D +NTA+ERL+KADV+YRFVIDVAN++ S+
Sbjct:  299 KETQEMLDFCGKHNIAANIELIKMDEINTAIERLSKADVKYRFVIDVANSLSSS 352          
BLAST of FC925344 vs. ExPASy Swiss-Prot
Match: MTDH_MEDSA (Probable mannitol dehydrogenase OS=Medicago sativa GN=CAD1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.440e-14
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 3
Query:   45 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKS 203
            KETQEM+DF  KHNI ADIE+I    +NTAMERL KADV+YRFVIDVAN+  S
Sbjct:  306 KETQEMLDFCGKHNITADIELIKMHEINTAMERLHKADVKYRFVIDVANSFSS 358          
BLAST of FC925344 vs. ExPASy Swiss-Prot
Match: CADH9_ORYSJ (Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza sativa subsp. japonica GN=CAD9 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.049e-13
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 3
Query:   45 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 197
            ++TQEM+DFA +H + A++EVI  + VN AMERL K DVRYRFVIDVANTM
Sbjct:  308 RDTQEMVDFAVEHGVAAEVEVIGMEDVNGAMERLQKGDVRYRFVIDVANTM 358          
BLAST of FC925344 vs. ExPASy Swiss-Prot
Match: CADH2_ARATH (Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.049e-13
Identity = 34/51 (66.67%), Postives = 44/51 (86.27%), Query Frame = 3
Query:   45 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 197
            KETQEM++F AKH I +DIE+I    +N+AM+RLAK+DVRYRFVIDVAN++
Sbjct:  303 KETQEMLEFCAKHKIVSDIELIKMSDINSAMDRLAKSDVRYRFVIDVANSL 353          
BLAST of FC925344 vs. ExPASy Swiss-Prot
Match: CADH3_ARATH (Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis thaliana GN=CAD3 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.760e-12
Identity = 33/51 (64.71%), Postives = 43/51 (84.31%), Query Frame = 3
Query:   45 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 197
            KETQEM++F AKH I +DIE+I    +N+AM+RL K+DVRYRFVIDVAN++
Sbjct:  302 KETQEMLEFCAKHKIVSDIELIKMSDINSAMDRLVKSDVRYRFVIDVANSL 352          
BLAST of FC925344 vs. ExPASy Swiss-Prot
Match: CAD8C_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8C OS=Oryza sativa subsp. japonica GN=CAD8C PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.921e-12
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 3
Query:   45 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANT 194
            ++ Q M+DFA +H I A++EVI  DYVNTAMERL K DVRYRFVIDVA +
Sbjct:  380 RDCQAMLDFAGEHGITAEVEVIKMDYVNTAMERLEKNDVRYRFVIDVAGS 429          
BLAST of FC925344 vs. ExPASy Swiss-Prot
Match: CAD8B_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8B OS=Oryza sativa subsp. japonica GN=CAD8B PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.921e-12
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 3
Query:   45 KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANT 194
            ++ Q M+DFA +H I A++EVI  DYVNTAMERL K DVRYRFVIDVA +
Sbjct:  377 RDCQAMLDFAGEHGITAEVEVIKMDYVNTAMERLEKNDVRYRFVIDVAGS 426          
The following BLAST results are available for this feature:
BLAST of FC925344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
CADH7_ORYSJ4.476e-1675.00Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa s... [more]
CADH5_ORYSJ1.701e-1581.25Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza... [more]
CADH3_ORYSJ2.901e-1580.00Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]
MTDH1_STYHU4.948e-1568.52Probable mannitol dehydrogenase 1 OS=Stylosanthes ... [more]
MTDH_MEDSA1.440e-1471.70Probable mannitol dehydrogenase OS=Medicago sativa... [more]
CADH9_ORYSJ6.049e-1366.67Probable cinnamyl alcohol dehydrogenase 9 OS=Oryza... [more]
CADH2_ARATH6.049e-1366.67Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis th... [more]
CADH3_ARATH1.760e-1264.71Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis th... [more]
CAD8C_ORYSJ3.921e-1266.00Probable cinnamyl alcohol dehydrogenase 8C OS=Oryz... [more]
CAD8B_ORYSJ3.921e-1266.00Probable cinnamyl alcohol dehydrogenase 8B OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YC22FM1 TF Citrus clementina cDNA clone KN0AAP11YC22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925344 ID=FC925344; Name=FC925344; organism=Citrus clementina; type=EST; length=463bp
TTTCAGGGAGCCTTTTAGTTGGTGGCAGTCTCATTGGGGGGTTGAAGGAG
ACTCAAGAGATGATTGATTTTGCAGCAAAACACAACATCAGAGCTGATAT
TGAGGTCATACCGGCCGACTATGTGAACACAGCCATGGAGCGCCTTGCTA
AAGCCGATGTTAGATATCGCTTTGTCATCGACGTTGCAAACACAATGAAG
TCCACTCCTTAAATTTTCTCCCTTTTGAGTTGCGCTTAAAACGAGGAATG
TGCGTTTATTGTTGAGTCACAACATCGTCTAAGTTTTAGATTATGTTAGT
CTTTTGTTGTGATTTCAAAACTGTTTTTACTTTTTAAGAATAATAATTTC
GTGACATATATTCCATCTGTGTGACAAATTTATGTAATAGCGAGCTATAT
GTTAGTTTTTACTGAAATTAATTATTCAGGTTTTGATTTAACCTTAAAAA
AAAAAAAAAAAAA
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