FC925345

Overview
NameFC925345
Unique NameFC925345
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig599 contig Ccv1_Contig599:232..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA5_ENTHI (Proteasome subunit alpha type-5 OS=Entamoeba histolytica PE=3 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 2.922e-52
Identity = 105/171 (61.40%), Postives = 131/171 (76.61%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEES--MSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV 509
            VEK  +SPL+  SS+EKI+EID+HIG A+SGL ADARTL+++AR+E QNHRF Y EP+ VE   QA+ DL+LRFGEG  +   MSRPFGV+LLIAG DE GP L+ TDPSG F +  AKA G+ +E A S L E+YNK +TL+EAE +ALS LKQVMEEK+   NV++A V
Sbjct:   50 VEKRISSPLMLGSSIEKIIEIDDHIGAAVSGLTADARTLIDNARLEAQNHRFMYDEPINVEVVAQAISDLSLRFGEGSRKKKVMSRPFGVALLIAGVDETGPRLFQTDPSGMFIEFYAKATGAGTEAAQSILHEKYNKSMTLREAEILALSTLKQVMEEKLNSKNVEVALV 220          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA5_TRYBB (Proteasome subunit alpha type-5 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.984e-52
Identity = 102/191 (53.40%), Postives = 143/191 (74.87%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGE--GDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---YHLYTPSEVEAVINR 563
            EK   S L++PSSV KI+EID HIG  +SG++ADAR LV+HARVE QNHRF+Y EPM+VES   A CDL+++FGE  G ++ MSRPFGVSLLIAG DENGP L+ TDPSGT+ + +A+AIG  +E A +   E+Y++++T++EAE + + IL+QVMEEK+T  +V+IA V  +     +Y   +++ +I+R
Sbjct:   51 EKRVPSTLVDPSSVNKILEIDHHIGTVLSGMVADARILVDHARVEAQNHRFTYDEPMSVESCALATCDLSVQFGESGGRKKLMSRPFGVSLLIAGVDENGPQLWQTDPSGTYTRYDAQAIGGGAEAAQTVFSERYHRNMTVEEAENLTVQILRQVMEEKLTKTSVEIAIVPVSTGRLQIYDQEQIQRIIDR 241          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA5_YEAST (Proteasome component PUP2 OS=Saccharomyces cerevisiae GN=PUP2 PE=1 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 2.094e-50
Identity = 105/194 (54.12%), Postives = 136/194 (70.10%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGE---GDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT--YHLYTPSEVEAVINRL 566
            VEK  TSPLLE  S+EKI+EID HIGCAMSGL ADAR+++EHAR     H   Y E + VES TQ++CDLALRFGE   G+E  MSRPFGV+LLIAG D ++G  L++ +PSGTF++ NAKAIGS SEGA + L  +++  LTL+EAE + L ILKQVMEEK+  NN  ++ +     + +Y   +   +I  L
Sbjct:   50 VEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELIKEL 243          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA5_DROME (Proteasome subunit alpha type-5 OS=Drosophila melanogaster GN=Prosalpha5 PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.357e-49
Identity = 104/194 (53.61%), Postives = 139/194 (71.65%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGE-GDEE---SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAP--TYHLYTPSEVEAVINRL 566
            VEK  TSPL+ PS+VEKI+E+D+HIGCA SGL+ADARTL+E ARVE QNH F Y E M++ES  QA+  LA++FG+ GD +   +MSRPFGV++L AG +   P L++ DPSGTF +  AKAIGS SEGA  +LQ+ +  DLTL EA  I+L+ LKQVMEEK+   NV++  +     ++++T  EVE  I  +
Sbjct:   50 VEKRITSPLMVPSTVEKIVEVDKHIGCATSGLMADARTLIERARVECQNHWFVYNERMSIESCAQAVSTLAIQFGDSGDSDGAAAMSRPFGVAILFAGIEAGQPQLWHMDPSGTFVRHGAKAIGSGSEGAQQNLQDLFRPDLTLDEAIDISLNTLKQVMEEKLNSTNVEVMTMTKEREFYMFTKEEVEQHIKNI 243          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA5_CAEEL (Proteasome subunit alpha type-5 OS=Caenorhabditis elegans GN=pas-5 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.717e-44
Identity = 88/172 (51.16%), Postives = 127/172 (73.84%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGD-EESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT 518
            EK  TS L+   ++EKI ++D+HIG   +GLIAD+RTLVE A++E QN  F+Y   + VE  TQ++ +LAL+FG+ D + SMSRPFGV++L AG D+ G  L++ DPSGTF  C AK+IG++S+GA+ +L+EQY+  LT++E   +AL+ILKQVMEEK+   NV++  + PT
Sbjct:   51 EKRSTSKLMVNDAIEKISKVDQHIGVTFAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLALQFGDDDVKASMSRPFGVAMLFAGVDQEGAKLFHLDPSGTFIDCKAKSIGAASDGAEQNLKEQYHDALTIKEGLKMALAILKQVMEEKLNSANVEVVVIKPT 222          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.485e-35
Identity = 77/169 (45.56%), Postives = 109/169 (64.50%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV 509
            V+K  TS L+EP S+EK+ +ID HIG A +GL+ADAR LVE AR+E Q +R++YGEP+ V+   +A+CDL   +    +    RPFG +LLIAG D  G  L+ TDPSG   +  A AIG   + A    +E+Y +D+TLQEA  +A+  L +   E+ T +N++IA V
Sbjct:   52 VDKRVTSKLIEPESIEKVYQIDTHIGAATAGLVADARVLVERARIEAQTYRYTYGEPIDVDVLVKAICDLKQVY---TQHGGVRPFGTALLIAGVDTKGCRLFETDPSGALTEHKATAIGEGRQEALDVFEEEYREDMTLQEAIELAVRALYEASREETTADNLEIAVV 217          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_METS3 (Proteasome subunit alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=psmA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.181e-33
Identity = 78/184 (42.39%), Postives = 110/184 (59.78%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAV 554
            V+K  TS L+E +S+EKI +IDEHIG A SGL+ADAR LVE ARVE Q ++ +Y EP+ V+S ++ LCD+   +    +    RPFG +L+I G  +    L+ TDPSG   +  A AIGS    A    ++QY  D+ L EA  +AL+ + +  E + T NNV+IA +     +YT    E V
Sbjct:   51 VDKRTTSNLVEATSIEKIFKIDEHIGAATSGLVADARALVERARVEAQINKITYSEPIRVDSLSKKLCDMLQMY---TQNGGVRPFGSALIIGGVYDGICKLFETDPSGALIEYKATAIGSGRSAAMDIFEDQYKDDMNLNEAINLALTAINEATEHETTANNVEIAVIKCGEEVYTKLSQEEV 231          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_METTH (Proteasome subunit alpha OS=Methanobacterium thermoautotrophicum GN=psmA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.386e-32
Identity = 75/196 (38.27%), Postives = 113/196 (57.65%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT---YHLYTPSEVEAVINRL*VSRE 581
            V+K  TS L+EP S+EKI +IDEHIG A SGL+ADAR ++E AR+E Q +R +Y EP+ VES  + +CD+   +    +    RPFG +L+I G +  G  L+ TDPSG   +  A AIG+    A    +++Y+ D+ L +A  +AL  + +  E K TP +V+IA +      Y      E+   +  L + +E
Sbjct:   51 VDKRPTSKLVEPKSIEKIFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAKKICDMKQMY---TQHGGVRPFGTALIIGGVNGRGCRLFETDPSGALIEYKATAIGAGRPAAMEEFEKKYSDDMNLNQAIELALDAVYEATEGKTTPESVEIAVIEAADKKYRRLPDDEIRDHVEELLIRKE 243          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_METVS (Proteasome subunit alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=psmA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.482e-32
Identity = 76/191 (39.79%), Postives = 118/191 (61.78%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHL---YTPSEVEAVINRL 566
            V++  TS L++ SS+EKI +ID+HI  A SGL+ADAR L++ ARVE Q +R SYGE +TVE+  + +CD+   +        +RPFG++LLI G D +   L+ TDPSG   +  A AIGS    A   L+E+Y++++++ E   +A+  L +  EE + P N+D+A V  T  L    T  E+E ++ ++
Sbjct:   52 VDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARVEAQVNRISYGEAITVEALAKKICDIKQAY---THHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPVAMEILEEKYDENMSVSEGMELAIYALSKTTEE-LKPENIDMAIVKDTGKLVEKITVFEIEKIVKKV 238          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMA_THESM (Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=psmA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.276e-31
Identity = 77/184 (41.85%), Postives = 115/184 (62.50%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVA---PTYHLYTPSEV 545
            VEK  TS L+EP S EKI +ID+HI  A SG+IADAR LV+ AR+E Q +R +YGEP+ +    + +CDL        +    RPFG +LL+AG +E  P L+ TDPSG +++  A AIGS    A +  +E+Y  ++TL+EA  +A+  L ++MEE  +P ++++A ++     +   TP EV
Sbjct:   52 VEKRVTSKLIEPESYEKIFQIDDHIAAASSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQMH---TQYGGVRPFGAALLMAGVNEK-PELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEKYRDEMTLEEAIKLAVLALSKIMEEP-SPESIEVAVISVKEKKFKKITPEEV 230          
The following BLAST results are available for this feature:
BLAST of FC925345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA5_ENTHI2.922e-5261.40Proteasome subunit alpha type-5 OS=Entamoeba histo... [more]
PSA5_TRYBB4.984e-5253.40Proteasome subunit alpha type-5 OS=Trypanosoma bru... [more]
PSA5_YEAST2.094e-5054.12Proteasome component PUP2 OS=Saccharomyces cerevis... [more]
PSA5_DROME1.357e-4953.61Proteasome subunit alpha type-5 OS=Drosophila mela... [more]
PSA5_CAEEL1.717e-4451.16Proteasome subunit alpha type-5 OS=Caenorhabditis ... [more]
PSMA_METKA2.485e-3545.56Proteasome subunit alpha OS=Methanopyrus kandleri ... [more]
PSMA_METS35.181e-3342.39Proteasome subunit alpha OS=Methanobrevibacter smi... [more]
PSMA_METTH4.386e-3238.27Proteasome subunit alpha OS=Methanobacterium therm... [more]
PSMA_METVS7.482e-3239.79Proteasome subunit alpha OS=Methanococcus vannieli... [more]
PSMA_THESM1.276e-3141.85Proteasome subunit alpha OS=Thermococcus sibiricus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH24FM1 TF Citrus clementina cDNA clone KN0AAP8YH24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925345 ID=FC925345; Name=FC925345; organism=Citrus clementina; type=EST; length=649bp
CTGTCGAGAAACTTTTTACTTCACCACTGCTGGAGCCCAGCAGTGTGGAG
AAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGAGTGGATTGAT
TGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAAACTCAGAATC
ATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTACTACACAAGCA
CTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAGAATCCATGTC
TCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCCGACGAGAATGGAC
CTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCAATGCAATGCA
AAGGCTATTGGTTCAAGTTCAGAAGGAGCTGACAGTTCTCTCCAAGAGCA
ATATAACAAGGATTTAACCCTTCAGGAAGCAGAGACAATTGCTCTATCAA
TTTTGAAGCAAGTTATGGAAGAAAAGGTCACTCCAAACAATGTTGATATC
GCAAGGGTAGCTCCAACGTATCATCTCTATACCCCTTCTGAGGTGGAGGC
TGTCATCAATCGCCTATGAGTATCCAGAGAAAATCATCTTTAAAATTTCT
TCCCTGGCTTCAGTGGTGTTTCTTCAGTTCTTTGCAGTGAAAGTGCACT
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