FC925345

Overview
NameFC925345
Unique NameFC925345
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA2_XENLA (Proteasome subunit alpha type-2 OS=Xenopus laevis GN=psma2 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.042e-21
Identity = 65/182 (35.71%), Postives = 98/182 (53.85%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT-YHLYTPSEVE 548
            EK   S L +  S  K+  I +HIG   SG+  D R LV  AR   Q +   Y EP+    T Q +  +A    E  +    RPFGVSLLIAG DE  P L+ +DPSG ++   A A+G +     + L+++YN+DL L++A   A+  LK+  E ++T +N+++       +   TP+EV+
Sbjct:   49 EKKQKSILYDEQSAHKVEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYYLVYQEPIP---TAQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWDEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFKRLTPAEVK 227          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA7A_ARATH (Proteasome subunit alpha type-7-A OS=Arabidopsis thaliana GN=PAD1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.667e-21
Identity = 65/169 (38.46%), Postives = 93/169 (55.03%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD--ENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA 503
            VEK  T  L +  S  KI+ +D HI  A +GL ADAR L+  AR+E Q+HR +  +P+TVE  T+ +  L  ++    +    RPFG+S LI G D     P+LY TDPSGTF    A A G +S      L++ Y K+   QE   +A+  L +V+E      N+++A
Sbjct:   46 VEKKSTPKLQDSRSARKIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKY---TQSGGVRPFGLSTLIVGFDPYTRIPALYQTDPSGTFSAWKANATGRNSNSIREFLEKNY-KESAGQETVKLAIRALLEVVES--GGKNIEVA 208          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA7_SCHPO (Probable proteasome subunit alpha type-7 OS=Schizosaccharomyces pombe GN=SPBC106.16 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.760e-21
Identity = 59/173 (34.10%), Postives = 100/173 (57.80%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD--ENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAP 515
            VE+     L   S+ +KI  +D H+  A +GL ADAR L++ ARVE QNH+ +  +P+++E  T+ +  +  ++    +    RPFGVS LIAG D  +N P +Y T+P+G +    A AIG +S+ A   L++ + + L+  E   +A+S L +V++      N+++A + P
Sbjct:   46 VERKNVPKLQNVSNFQKIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKY---TQSGGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEKNWKEGLSRDETIHLAVSSLLEVVQ--TASGNIELAIMDP 213          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA7B_ORYSJ (Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. japonica GN=PAD1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.760e-21
Identity = 66/169 (39.05%), Postives = 94/169 (55.62%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD--ENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA 503
            VEK  T  L +  SV KI  +D HI  A +GL ADAR L+  ARVE Q+HR +  + +TVE  T+ +  L  ++    +    RPFG+S LI G D   + P+LY TDPSGTF    A A G +S      L++ Y K+ + +E   +A+  L +V+E      N++IA
Sbjct:   46 VEKKSTPKLQDSRSVRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKY---TQSGGVRPFGLSTLIVGFDPYTDKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNY-KETSGKETIKLAIRALLEVVES--GGKNIEIA 208          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA7B_ORYSI (Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. indica GN=PAD1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.760e-21
Identity = 66/169 (39.05%), Postives = 94/169 (55.62%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD--ENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA 503
            VEK  T  L +  SV KI  +D HI  A +GL ADAR L+  ARVE Q+HR +  + +TVE  T+ +  L  ++    +    RPFG+S LI G D   + P+LY TDPSGTF    A A G +S      L++ Y K+ + +E   +A+  L +V+E      N++IA
Sbjct:   46 VEKKSTPKLQDSRSVRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKY---TQSGGVRPFGLSTLIVGFDPYTDKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNY-KETSGKETIKLAIRALLEVVES--GGKNIEIA 208          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA2_HUMAN (Proteasome subunit alpha type-2 OS=Homo sapiens GN=PSMA2 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 7.760e-21
Identity = 64/182 (35.16%), Postives = 98/182 (53.85%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT-YHLYTPSEVE 548
            EK   S L +  SV K+  I +HIG   SG+  D R LV  AR   Q +   Y EP+    T Q +  +A    E  +    RPFGVSLLI G +E  P L+ +DPSG ++   A A+G +     + L+++YN+DL L++A   A+  LK+  E ++T +N+++       +   TP+EV+
Sbjct:   49 EKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIP---TAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEVK 227          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA2_BOVIN (Proteasome subunit alpha type-2 OS=Bos taurus GN=PSMA2 PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 7.760e-21
Identity = 64/182 (35.16%), Postives = 98/182 (53.85%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT-YHLYTPSEVE 548
            EK   S L +  SV K+  I +HIG   SG+  D R LV  AR   Q +   Y EP+    T Q +  +A    E  +    RPFGVSLLI G +E  P L+ +DPSG ++   A A+G +     + L+++YN+DL L++A   A+  LK+  E ++T +N+++       +   TP+EV+
Sbjct:   49 EKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIP---TAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEVK 227          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA7_PONAB (Proteasome subunit alpha type-7 OS=Pongo abelii GN=PSMA7 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.014e-20
Identity = 64/198 (32.32%), Postives = 103/198 (52.02%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA--RVAPTYHLYTPSEVEAVINRL*VSRENH 587
            VEK   + L +  +V KI  +D+++  A +GL ADAR ++  ARVE Q+HR +  + +TVE  T+ +  L  R+ + +     RPFG+S LI G D +G P LY TDPSGT+    A AIG  ++     L++ Y  +    +  TI L I   +   +    N+++A  R      +  P E+E  +  +   +E +
Sbjct:   45 VEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDSVTVEYITRYIASLKQRYTQSNGR---RPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQPLKILNPEEIEEYVAEIEKEKEEN 239          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA2_RAT (Proteasome subunit alpha type-2 OS=Rattus norvegicus GN=Psma2 PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.014e-20
Identity = 64/181 (35.36%), Postives = 97/181 (53.59%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT-YHLYTPSEV 545
            EK   S L +  SV K+  I +HIG   SG+  D R LV  AR   Q +   Y EP+    T Q +  +A    E  +    RPFGVSLLI G +E  P L+ +DPSG ++   A A+G +     + L+++YN+DL L++A   A+  LK+  E ++T +N+++       +   TP+EV
Sbjct:   49 EKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIP---TAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEV 226          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA2_MOUSE (Proteasome subunit alpha type-2 OS=Mus musculus GN=Psma2 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.014e-20
Identity = 64/181 (35.36%), Postives = 97/181 (53.59%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT-YHLYTPSEV 545
            EK   S L +  SV K+  I +HIG   SG+  D R LV  AR   Q +   Y EP+    T Q +  +A    E  +    RPFGVSLLI G +E  P L+ +DPSG ++   A A+G +     + L+++YN+DL L++A   A+  LK+  E ++T +N+++       +   TP+EV
Sbjct:   49 EKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIP---TAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAGFRRLTPTEV 226          
The following BLAST results are available for this feature:
BLAST of FC925345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA2_XENLA2.042e-2135.71Proteasome subunit alpha type-2 OS=Xenopus laevis ... [more]
PSA7A_ARATH2.667e-2138.46Proteasome subunit alpha type-7-A OS=Arabidopsis t... [more]
PSA7_SCHPO7.760e-2134.10Probable proteasome subunit alpha type-7 OS=Schizo... [more]
PSA7B_ORYSJ7.760e-2139.05Proteasome subunit alpha type-7-B OS=Oryza sativa ... [more]
PSA7B_ORYSI7.760e-2139.05Proteasome subunit alpha type-7-B OS=Oryza sativa ... [more]
PSA2_HUMAN7.760e-2135.16Proteasome subunit alpha type-2 OS=Homo sapiens GN... [more]
PSA2_BOVIN7.760e-2135.16Proteasome subunit alpha type-2 OS=Bos taurus GN=P... [more]
PSA7_PONAB1.014e-2032.32Proteasome subunit alpha type-7 OS=Pongo abelii GN... [more]
PSA2_RAT1.014e-2035.36Proteasome subunit alpha type-2 OS=Rattus norvegic... [more]
PSA2_MOUSE1.014e-2035.36Proteasome subunit alpha type-2 OS=Mus musculus GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP8YH24FM1 TF Citrus clementina cDNA clone KN0AAP8YH24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925345 ID=FC925345; Name=FC925345; organism=Citrus clementina; type=EST; length=649bp
CTGTCGAGAAACTTTTTACTTCACCACTGCTGGAGCCCAGCAGTGTGGAG
AAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGAGTGGATTGAT
TGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAAACTCAGAATC
ATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTACTACACAAGCA
CTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAGAATCCATGTC
TCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCCGACGAGAATGGAC
CTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCAATGCAATGCA
AAGGCTATTGGTTCAAGTTCAGAAGGAGCTGACAGTTCTCTCCAAGAGCA
ATATAACAAGGATTTAACCCTTCAGGAAGCAGAGACAATTGCTCTATCAA
TTTTGAAGCAAGTTATGGAAGAAAAGGTCACTCCAAACAATGTTGATATC
GCAAGGGTAGCTCCAACGTATCATCTCTATACCCCTTCTGAGGTGGAGGC
TGTCATCAATCGCCTATGAGTATCCAGAGAAAATCATCTTTAAAATTTCT
TCCCTGGCTTCAGTGGTGTTTCTTCAGTTCTTTGCAGTGAAAGTGCACT
back to top