FC925345

Overview
NameFC925345
Unique NameFC925345
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA1_ORYSJ (Proteasome subunit alpha type-1 OS=Oryza sativa subsp. japonica GN=PAF1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.258e-20
Identity = 60/160 (37.50%), Postives = 87/160 (54.37%), Query Frame = 3
Query:   39 SSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYN--KDLTLQEAETIALSILKQVME-EKVTPNNVDIARV 509
            S   K+  + +H G A++GL AD R L    R E  NH F Y  P+ V      L D A       + S  RP+GV LL+AG DE+G  LYY  PSG +++  A AIGS S+ A + L+ ++    D T ++    ALS +K+ ++ EK+T +N  +A V
Sbjct:   58 SHQRKVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVC---TQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYNDYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIV 214          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA4_CAEEL (Proteasome subunit alpha type-4 OS=Caenorhabditis elegans GN=pas-3 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.949e-20
Identity = 56/153 (36.60%), Postives = 90/153 (58.82%), Query Frame = 3
Query:   48 EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA 503
            EK+  + ++I C ++G+ ADA  L+ H R    ++R SYGE M VE   Q LC+   R+    +    RPFGVSLL  G D++ G  LY +DPSG +    A  IGS+ + A + L+++Y K   L+EA+ +A+ +L + ++ K+    V++A
Sbjct:   63 EKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRY---TQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEY-KSPNLEEAKQLAIKVLWKTLDVKLASEKVEMA 211          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA73_DROME (Proteasome subunit alpha type-7-1B OS=Drosophila melanogaster GN=Pros28.1B PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.851e-20
Identity = 55/156 (35.26%), Postives = 87/156 (55.77%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVM 467
            VEK     L E   V KI  +D+H+    SGL ADAR LV  A++E Q+HR ++ +P TVE  T+ +  L   + + +     RPFG+S L+ G DE+G P L+ TDPSG F++  A   G SS+     +++  ++ LT+ +       I++ ++
Sbjct:   47 VEKRSVGDLQEERMVRKICMLDDHVVMTFSGLTADARILVSRAQMEAQSHRLNFEKPTTVEYITRYIAQLKQNYTQSNGR---RPFGLSCLVGGFDEDGTPHLFQTDPSGIFYEWRANTTGRSSQPVRDYMEKHADEILTIADEAAAIKHIVRTLV 199          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA71_DROME (Proteasome subunit alpha type-7-1 OS=Drosophila melanogaster GN=Pros28.1 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.030e-20
Identity = 55/168 (32.74%), Postives = 93/168 (55.36%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPS-LYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA 503
            VEK   + L E   V KI  +D H+  A +GL ADAR ++  A+VE Q+HR +  +P+T+E  T+ +  L  ++ + +     RPFG+S LI G D +G + L+ T+PSG F++  A A G S++      ++ Y ++    E   + L+I   +   +   NN+++A
Sbjct:   47 VEKKSVAQLQEDRKVRKICMLDNHVVMAFAGLTADARIMINRAQVECQSHRLNVEDPVTLEYITRFIAQLKQKYTQSNGR---RPFGISCLIGGFDADGSAHLFQTEPSGIFYEYKANATGRSAKVVREFFEKSYREEEVANEHGAVKLAIRALLEVAQSGQNNLEVA 211          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA7_DICDI (Proteasome subunit alpha type-7 OS=Dictyostelium discoideum GN=psmA7 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.121e-19
Identity = 58/168 (34.52%), Postives = 99/168 (58.93%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA 503
            VEK  T+ L +  S+ KI+++D+HI    +GL AD+R L+  A +E Q++R +  +  +VE  ++ +  +  R+    +    RPFG+S LI G D +G P+LY TDPSG++    A AIG SS+     L++ Y  D++ +E+  +A+  L +++E      N++IA
Sbjct:   48 VEKKATAKLQDARSIRKIVKLDDHICLTFAGLTADSRVLISKALMECQSYRLTVEDSPSVEYISKFIAGIQQRY---TQSGGVRPFGISTLIVGFDTDGTPNLYQTDPSGSYSSWKAAAIGRSSKSVGEFLEKNYT-DVSEEESIKLAVRALLEIVES--GNKNIEIA 209          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA1B_ARATH (Proteasome subunit alpha type-1-B OS=Arabidopsis thaliana GN=PAF2 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.464e-19
Identity = 57/179 (31.84%), Postives = 94/179 (52.51%), Query Frame = 3
Query:   39 SSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETI--ALSILKQVMEEKVTPNN---VDIARVAPTYHLYTPSEVEAVIN 560
            S   KI ++D+HIG A++GL AD R L  + R E+ NH F+Y  P+ V      L D A       + S  RP+GV LL+ G DE+G  LYY  PSG +++  A AIGS S+ A + L+ ++       + + I  A+  +++ ++ +   ++   V +  V   +H      ++ VI+
Sbjct:   58 SHQRKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVC---TQRSWKRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFESFQESSKEDLIKDAIMAIRETLQGETLKSSLCTVSVLGVDEPFHFLDQESIQKVID 233          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA1A_ARATH (Proteasome subunit alpha type-1-A OS=Arabidopsis thaliana GN=PAF1 PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 2.496e-19
Identity = 58/179 (32.40%), Postives = 95/179 (53.07%), Query Frame = 3
Query:   39 SSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNK--DLTLQEAETIALSILKQVMEEKVTPNN---VDIARVAPTYHLYTPSEVEAVIN 560
            S   KI ++D+HIG A++GL AD R L  + R E+ NH F+Y  P+ V      L D A       + S  RP+GV LL+ G DE+G  LYY  PSG +++  A AIGS S+ A + L+ ++    D + ++    A+  +++ ++ +   ++   V I  V   +H      ++ VI+
Sbjct:   58 SHQRKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVC---TQRSWKRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFESFGDSSREDLIKDAILAVRETLQGETLKSSLCTVAILGVDEPFHFLDQEAIQKVID 233          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA7_YEAST (Proteasome component PRE6 OS=Saccharomyces cerevisiae GN=PRE6 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.258e-19
Identity = 59/171 (34.50%), Postives = 96/171 (56.14%), Query Frame = 3
Query:   51 KIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD--ENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNK---DLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHLYTPSEVE 548
            K+ +ID H+  + SGL AD+R L+E ARVE Q+HR +  +P+TVE  T+ +  +  R+    +    RPFGVS LIAG D  ++ P LY T+PSG +   +A+ IG +S+     L++ Y++     T++E   + +  L +V++      N++I  V P   +   S  E
Sbjct:   63 KVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRY---TQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ--TGAKNIEITVVKPDSDIVALSSEE 228          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA4_SCHPO (Probable proteasome subunit alpha type-4 OS=Schizosaccharomyces pombe GN=SPAC13C5.01c PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.561e-19
Identity = 60/196 (30.61%), Postives = 100/196 (51.02%), Query Frame = 3
Query:    6 EKLFTSPLLEPS-SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVME-EKVTPNNVDIARVAP-------TYHLYTPSEVEAVINR 563
            EK  TS LLE   S EK+  I +++ CA++GL ADA  L+ +AR   Q +  ++ E M  E   + +CDL   +    +    RPFGVS L AG D   G  L+ ++PSG +    A +IG +S    S ++++Y  D+ L EA  +A+  L + ++   +T   ++ A +            ++   E+  V+N+
Sbjct:   48 EKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGY---TQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYKDDINLDEASAMAVKFLSKTLDSNSLTHEKIEFATITKDTTKNKMVCKIWKSDEINEVLNK 240          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA2_YEAST (Proteasome component Y7 OS=Saccharomyces cerevisiae GN=PRE8 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.561e-19
Identity = 62/168 (36.90%), Postives = 95/168 (56.55%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHAR-VETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA 503
            EK  +SPL    ++ K+  +   IG   SG+  D R LV+ +R V   +++  YGE      T   + ++A    E  +    RPFGVSLLIAG DE NG SLY  DPSG+++   A AIG  S  A + L++++N +L L++A  IAL  LK+ +E +   + +++A
Sbjct:   48 EKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGE---YPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEFNGDTIELA 212          
The following BLAST results are available for this feature:
BLAST of FC925345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA1_ORYSJ2.258e-2037.50Proteasome subunit alpha type-1 OS=Oryza sativa su... [more]
PSA4_CAEEL2.949e-2036.60Proteasome subunit alpha type-4 OS=Caenorhabditis ... [more]
PSA73_DROME3.851e-2035.26Proteasome subunit alpha type-7-1B OS=Drosophila m... [more]
PSA71_DROME5.030e-2032.74Proteasome subunit alpha type-7-1 OS=Drosophila me... [more]
PSA7_DICDI1.121e-1934.52Proteasome subunit alpha type-7 OS=Dictyostelium d... [more]
PSA1B_ARATH1.464e-1931.84Proteasome subunit alpha type-1-B OS=Arabidopsis t... [more]
PSA1A_ARATH2.496e-1932.40Proteasome subunit alpha type-1-A OS=Arabidopsis t... [more]
PSA7_YEAST4.258e-1934.50Proteasome component PRE6 OS=Saccharomyces cerevis... [more]
PSA4_SCHPO5.561e-1930.61Probable proteasome subunit alpha type-4 OS=Schizo... [more]
PSA2_YEAST5.561e-1936.90Proteasome component Y7 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH24FM1 TF Citrus clementina cDNA clone KN0AAP8YH24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925345 ID=FC925345; Name=FC925345; organism=Citrus clementina; type=EST; length=649bp
CTGTCGAGAAACTTTTTACTTCACCACTGCTGGAGCCCAGCAGTGTGGAG
AAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGAGTGGATTGAT
TGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAAACTCAGAATC
ATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTACTACACAAGCA
CTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAGAATCCATGTC
TCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCCGACGAGAATGGAC
CTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCAATGCAATGCA
AAGGCTATTGGTTCAAGTTCAGAAGGAGCTGACAGTTCTCTCCAAGAGCA
ATATAACAAGGATTTAACCCTTCAGGAAGCAGAGACAATTGCTCTATCAA
TTTTGAAGCAAGTTATGGAAGAAAAGGTCACTCCAAACAATGTTGATATC
GCAAGGGTAGCTCCAACGTATCATCTCTATACCCCTTCTGAGGTGGAGGC
TGTCATCAATCGCCTATGAGTATCCAGAGAAAATCATCTTTAAAATTTCT
TCCCTGGCTTCAGTGGTGTTTCTTCAGTTCTTTGCAGTGAAAGTGCACT
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