FC925345

Overview
NameFC925345
Unique NameFC925345
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA2_CAEEL (Proteasome subunit alpha type-2 OS=Caenorhabditis elegans GN=pas-2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.561e-19
Identity = 59/168 (35.12%), Postives = 90/168 (53.57%), Query Frame = 3
Query:   51 KIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG--PSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPT-YHLYTPSEV 545
            K+ +I +HIGC  SG+  D R LV+ AR     +   YGE M    T Q + D+A    E  +    RPFG SLLIAG D+N   P L+  DPSG ++   A A+G +   A + L++++++ L L +    AL  L++  +  +  NNV++A    T +H  T  +V
Sbjct:   60 KVEQISKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMP---TIQLVTDIAAVMQEYTQSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSEALELDDGIHTALLTLRESFDVGMNENNVEVAVCNSTGFHRLTKQQV 224          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA1_DROME (Proteasome subunit alpha type-1 OS=Drosophila melanogaster GN=Pros35 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.486e-19
Identity = 50/130 (38.46%), Postives = 75/130 (57.69%), Query Frame = 3
Query:   51 KIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETI 440
            KI+ ID+H+G +++GL ADAR L  + R E  N++ SY    T    ++ + +L  +     +    RP+GV LL+AG DE GP +Y   PS TF+ C A +IGS S+ A + L++  NK L   + E I
Sbjct:   62 KIIPIDDHLGISIAGLTADARVLSRYLRSECLNYKHSYD---TTYPVSRLITNLGNKMQTTTQRYDRRPYGVGLLVAGYDERGPHIYQVTPSATFFNCKANSIGSRSQSARTYLEKNLNKFLDSSKDEII 188          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA6_RAT (Proteasome subunit alpha type-6 OS=Rattus norvegicus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.618e-18
Identity = 54/188 (28.72%), Postives = 99/188 (52.66%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNK--DLTLQEAETIALSILKQVMEEKVTPNNVDIARVA---PTYHLYTPSEVEA 551
            +K     LL+ S+V  + +I E+IGC M+G+ AD+R+ V+ AR E  N ++ YG  + V+   + + D++  + +  E    RP G  +++ G D E GP +Y  DP+G +    A A G     + S L+++  K  D T ++    A++ L  V+     P+ +++  V    P + + T +E++A
Sbjct:   53 QKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAE---MRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDA 237          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA6_HUMAN (Proteasome subunit alpha type-6 OS=Homo sapiens GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.618e-18
Identity = 54/188 (28.72%), Postives = 99/188 (52.66%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNK--DLTLQEAETIALSILKQVMEEKVTPNNVDIARVA---PTYHLYTPSEVEA 551
            +K     LL+ S+V  + +I E+IGC M+G+ AD+R+ V+ AR E  N ++ YG  + V+   + + D++  + +  E    RP G  +++ G D E GP +Y  DP+G +    A A G     + S L+++  K  D T ++    A++ L  V+     P+ +++  V    P + + T +E++A
Sbjct:   53 QKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAE---MRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDA 237          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA6_BOVIN (Proteasome subunit alpha type-6 OS=Bos taurus GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.618e-18
Identity = 54/188 (28.72%), Postives = 99/188 (52.66%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNK--DLTLQEAETIALSILKQVMEEKVTPNNVDIARVA---PTYHLYTPSEVEA 551
            +K     LL+ S+V  + +I E+IGC M+G+ AD+R+ V+ AR E  N ++ YG  + V+   + + D++  + +  E    RP G  +++ G D E GP +Y  DP+G +    A A G     + S L+++  K  D T ++    A++ L  V+     P+ +++  V    P + + T +E++A
Sbjct:   53 QKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAE---MRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDA 237          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA7_TRYBB (Proteasome subunit alpha type-7 OS=Trypanosoma brucei brucei GN=PSA4 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.113e-18
Identity = 56/157 (35.67%), Postives = 85/157 (54.14%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVME 470
            VEK     L +  +  KI ++DEHI  A +GL ADAR +V HA++E Q  R SY + + V+   + +  +  R     + S SRP+GVS +I G +ENG P L+ T+PSGT    NA AIG + +     +++ Y   +T       A+  L + +E
Sbjct:   45 VEKKSVQKLQDSRTTRKIYKLDEHIYLASAGLSADARVVVNHAQLECQRFRLSYEDAIDVDLLVRYVARVQQR---STQSSGSRPYGVSTIIGGFNENGQPQLWKTEPSGTSSAWNAAAIGRNDKVVLEFMEKNYQDGMTRDRCVHFAIKALLEAVE 198          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA4_HUMAN (Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.113e-18
Identity = 54/155 (34.84%), Postives = 89/155 (57.42%), Query Frame = 3
Query:   48 EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNK-DLTLQEAETIALSILKQVME-EKVTPNNVDIA 503
            EKI +++E + C+++G+ +DA  L    R+  Q +   Y EP+  E    ALCD+   +    +    RPFGVSLL  G D++ G  LY +DPSG +    A  IG++S  A S L++ Y + ++TL+ A  +A+ +L + M+  K++   V+IA
Sbjct:   63 EKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAY---TQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIA 214          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA4_BOVIN (Proteasome subunit alpha type-4 OS=Bos taurus GN=PSMA4 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.113e-18
Identity = 54/155 (34.84%), Postives = 89/155 (57.42%), Query Frame = 3
Query:   48 EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNK-DLTLQEAETIALSILKQVME-EKVTPNNVDIA 503
            EKI +++E + C+++G+ +DA  L    R+  Q +   Y EP+  E    ALCD+   +    +    RPFGVSLL  G D++ G  LY +DPSG +    A  IG++S  A S L++ Y + ++TL+ A  +A+ +L + M+  K++   V+IA
Sbjct:   63 EKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAY---TQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIA 214          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA73_DROVI (Proteasome subunit alpha type-7-1B OS=Drosophila virilis GN=Pros28.1B PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.760e-18
Identity = 59/170 (34.71%), Postives = 87/170 (51.18%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARV 509
            VEK     L    +  KI +ID+H+    +GL ADAR LV  A+VE Q+HR ++  P +VE  T+ L  L   +    +    RPFGVS LI G DE+G P L+ TDPSG +++ +A   G   +    ++ E   K+         A S +K V+    T  ++D A +
Sbjct:   44 VEKRAIDSLQIERTSRKIKKIDQHMAMTFAGLTADARVLVSRAQVEAQSHRLNFDRPASVEYITRYLARLKQTY---TQSVARRPFGVSCLIGGFDEDGRPRLFQTDPSGIYYEWSANTTGRLGQ----TVNEYLEKNTAAISRTPDAASAMKHVVRALFTATSLDPASI 206          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA6_MOUSE (Proteasome subunit alpha type-6 OS=Mus musculus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.760e-18
Identity = 54/188 (28.72%), Postives = 98/188 (52.13%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNK--DLTLQEAETIALSILKQVMEEKVTPNNVDIARVA---PTYHLYTPSEVEA 551
            +K     LL+ S+V  + +I E IGC M+G+ AD+R+ V+ AR E  N ++ YG  + V+   + + D++  + +  E    RP G  +++ G D E GP +Y  DP+G +    A A G     + S L+++  K  D T ++    A++ L  V+     P+ +++  V    P + + T +E++A
Sbjct:   53 QKKVPDKLLDSSTVTHLFKITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAE---MRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDA 237          
The following BLAST results are available for this feature:
BLAST of FC925345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA2_CAEEL5.561e-1935.12Proteasome subunit alpha type-2 OS=Caenorhabditis ... [more]
PSA1_DROME9.486e-1938.46Proteasome subunit alpha type-1 OS=Drosophila mela... [more]
PSA6_RAT1.618e-1828.72Proteasome subunit alpha type-6 OS=Rattus norvegic... [more]
PSA6_HUMAN1.618e-1828.72Proteasome subunit alpha type-6 OS=Homo sapiens GN... [more]
PSA6_BOVIN1.618e-1828.72Proteasome subunit alpha type-6 OS=Bos taurus GN=P... [more]
PSA7_TRYBB2.113e-1835.67Proteasome subunit alpha type-7 OS=Trypanosoma bru... [more]
PSA4_HUMAN2.113e-1834.84Proteasome subunit alpha type-4 OS=Homo sapiens GN... [more]
PSA4_BOVIN2.113e-1834.84Proteasome subunit alpha type-4 OS=Bos taurus GN=P... [more]
PSA73_DROVI2.760e-1834.71Proteasome subunit alpha type-7-1B OS=Drosophila v... [more]
PSA6_MOUSE2.760e-1828.72Proteasome subunit alpha type-6 OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH24FM1 TF Citrus clementina cDNA clone KN0AAP8YH24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925345 ID=FC925345; Name=FC925345; organism=Citrus clementina; type=EST; length=649bp
CTGTCGAGAAACTTTTTACTTCACCACTGCTGGAGCCCAGCAGTGTGGAG
AAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGAGTGGATTGAT
TGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAAACTCAGAATC
ATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTACTACACAAGCA
CTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAGAATCCATGTC
TCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCCGACGAGAATGGAC
CTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCAATGCAATGCA
AAGGCTATTGGTTCAAGTTCAGAAGGAGCTGACAGTTCTCTCCAAGAGCA
ATATAACAAGGATTTAACCCTTCAGGAAGCAGAGACAATTGCTCTATCAA
TTTTGAAGCAAGTTATGGAAGAAAAGGTCACTCCAAACAATGTTGATATC
GCAAGGGTAGCTCCAACGTATCATCTCTATACCCCTTCTGAGGTGGAGGC
TGTCATCAATCGCCTATGAGTATCCAGAGAAAATCATCTTTAAAATTTCT
TCCCTGGCTTCAGTGGTGTTTCTTCAGTTCTTTGCAGTGAAAGTGCACT
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