FC925345

Overview
NameFC925345
Unique NameFC925345
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA4_RAT (Proteasome subunit alpha type-4 OS=Rattus norvegicus GN=Psma4 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.760e-18
Identity = 54/155 (34.84%), Postives = 89/155 (57.42%), Query Frame = 3
Query:   48 EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNK-DLTLQEAETIALSILKQVME-EKVTPNNVDIA 503
            EKI +++E + C+++G+ +DA  L    R+  Q +   Y EP+  E    ALCD+   +    +    RPFGVSLL  G D++ G  LY +DPSG +    A  IG++S  A S L++ Y + ++TL+ A  +A+ +L + M+  K++   V+IA
Sbjct:   63 EKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAY---TQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAVKVLNKTMDVSKLSAEKVEIA 214          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA4_MOUSE (Proteasome subunit alpha type-4 OS=Mus musculus GN=Psma4 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.760e-18
Identity = 54/155 (34.84%), Postives = 89/155 (57.42%), Query Frame = 3
Query:   48 EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNK-DLTLQEAETIALSILKQVME-EKVTPNNVDIA 503
            EKI +++E + C+++G+ +DA  L    R+  Q +   Y EP+  E    ALCD+   +    +    RPFGVSLL  G D++ G  LY +DPSG +    A  IG++S  A S L++ Y + ++TL+ A  +A+ +L + M+  K++   V+IA
Sbjct:   63 EKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAY---TQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAVKVLNKTMDVSKLSAEKVEIA 214          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA3_ACACA (Proteasome subunit alpha type-3 (Fragment) OS=Acanthamoeba castellanii PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.760e-18
Identity = 52/157 (33.12%), Postives = 82/157 (52.23%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE 473
            VEKL  S +L P++  +I  +D H G AMSGL+AD R LV   R E  ++R  YG  ++ +   + L +    +         RPFG S+++   D+NGP LY  +PSG  W     AIG  +  A + +++    ++T +EA   A  I+  V ++
Sbjct:   48 VEKLLVSKMLVPNTNRRIHTVDRHCGLAMSGLVADGRQLVSRGRAEATSYREFYGTDISGKVLNERLSNFVQLY---SLYGSVRPFGTSVILGCVDKNGPQLYMIEPSGISWGYFGVAIGKGARAAKTEIEKLKLSEMTAREAIKEAAKIIYSVHDD 201          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA6_TOBAC (Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.708e-18
Identity = 57/187 (30.48%), Postives = 98/187 (52.41%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETI--ALSILKQVMEEKVTPNNVDIARVA---PTYHLYTPSEVE 548
            +K     LL+ +SV  +  I +++G   +G+ ADARTLV+ AR E    RF YG  M V+  ++ + D +  +    + +  RP GV  +I G D E GP L+  DP+G F+   A + GS  + A + L+++   D      ET+  A+S L+ V++E    + +++  V    P + + T  E++
Sbjct:   53 QKKVPDKLLDQTSVSHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFKYGYEMPVDVLSKWIADKSQVY---TQHAYMRPLGVVAMILGIDEEKGPQLFKCDPAGHFFGHKATSAGSKEQEAINFLEKKMKNDPAFSYEETVQTAISALQSVLQEDFKASEIEVGVVKKEDPIFRVLTTEEID 236          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.708e-18
Identity = 61/187 (32.62%), Postives = 96/187 (51.34%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQY--NKDLTLQEAETIALSILKQVMEE--KVTPNNVDIARVA-PTYHLYTPSEVE 548
            +K     LL+ SSV  +  I ++IG   +G+ ADAR+LV+ AR +    RF+YG  M V+   + + D +  +    + +  RP GV  ++ G D ENGP LY  DP+G F+   A + G   + A + L+++   N   T  E    A+S L+ V++E  K T   V + R   P +   T  E+E
Sbjct:   53 QKKVPDKLLDQSSVTHLFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVY---TQHAYMRPLGVVAMVMGVDEENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPSFTFDETVQTAISALQSVLQEDFKATEIEVGVVRAENPEFRALTTEEIE 236          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA4_MACFA (Proteasome subunit alpha type-4 OS=Macaca fascicularis GN=PSMA4 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.708e-18
Identity = 53/155 (34.19%), Postives = 89/155 (57.42%), Query Frame = 3
Query:   48 EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNK-DLTLQEAETIALSILKQVME-EKVTPNNVDIA 503
            EKI +++E + C+++G+ +DA  L    R+  Q +   Y EP+  E    ALCD+   +    +    RPFGVSLL  G D++ G  LY +DP+G +    A  IG++S  A S L++ Y + ++TL+ A  +A+ +L + M+  K++   V+IA
Sbjct:   63 EKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAY---TQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPNGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIA 214          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA4_DROME (Proteasome subunit alpha type-4 OS=Drosophila melanogaster GN=Pros29 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.708e-18
Identity = 58/183 (31.69%), Postives = 97/183 (53.01%), Query Frame = 3
Query:   48 EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQY----NKDLTLQEAETIALSILKQVME-EKVTPNNVDIARV-----APTYHLYTPSEVEAVINR 563
            EKI  +++++ C+++G+ +DA  L    R+  Q ++FSYGE +  E     LCD+   +    +    RPFGVSLL  G D   G  LY +DPSG +    A  IG++   A S L+++     N  LTL +A+ +A+ +L   ++  K+TP  V++A +        Y +    +VE +I +
Sbjct:   63 EKIYRLNDNMVCSVAGITSDANVLTSELRLIAQRYQFSYGEVIPCEQLVSHLCDIKQAY---TQYGGKRPFGVSLLYMGWDNKYGYQLYQSDPSGNYGGWKATCIGNNFGAAISMLKQELADKENVKLTLADAKDLAIKVLSMTLDTTKLTPEKVEMATLQRVDNKTVYSVLEKPDVEKLIEK 242          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA71_DROVI (Proteasome subunit alpha type-7-1 OS=Drosophila virilis GN=Pros28.1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.031e-18
Identity = 56/168 (33.33%), Postives = 94/168 (55.95%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA 503
            VEK   + L E  +V KI  +D H+  A +GL  DAR L+  A+VE Q+HR +  +P+T+E  T+ +  L  ++ + +     RPFG+S LI G D +G P L+ T+PSG F++  A A G S++      ++QY ++    E   + L+I   +   +   +N+++A
Sbjct:   47 VEKKSVAKLQEDRTVRKICVLD-HVVMAFAGL-TDARILINRAQVECQSHRLNVEDPVTLEYITRYIAQLKQKYTQSNGR---RPFGISCLIGGFDADGSPYLFQTEPSGIFYEYKANATGCSAKTVREFFEKQYREEEVSTERGAVKLAIRALLEVAQSGQHNLEVA 209          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA4_YEAST (Proteasome component Y13 OS=Saccharomyces cerevisiae GN=PRE9 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.370e-17
Identity = 57/203 (28.08%), Postives = 110/203 (54.19%), Query Frame = 3
Query:    6 EKLFTSPLLEP-SSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEK-VTPNNVDIARVAPTYH-------LYTPSEVEAVINRL*VSREN 584
            E+  TS LLE  +S EK+ ++++ I  A++GL ADA  L+  AR+  QN+  +Y E + VE   + L D+   +    +    RPFGVS + AG D+  G  LY ++PSG +    A ++G+++  A + LQ  Y  D+ + +A  +AL  L +  +   +T + ++ A +    +       ++ P E++ ++ +  +++++
Sbjct:   49 ERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGY---TQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVKTGITKKD 248          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA3_YEAST (Proteasome component C1 OS=Saccharomyces cerevisiae GN=PRE10 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.337e-17
Identity = 57/164 (34.76%), Postives = 81/164 (49.39%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEE----SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQ---EQYNKDLTLQEAETIALSILKQVMEE 473
            VEKL TS LL P    KI  +D HIGC  SGLI D R LV   R E  + +  Y  P+ + +        A R G+  +     +  RPFGVS +  G D+NG  LY  +PSG++W     A G   + A + L+   + + + L+ +EA   A  I+    E+
Sbjct:   50 VEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPA-------FADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHED 206          
The following BLAST results are available for this feature:
BLAST of FC925345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA4_RAT2.760e-1834.84Proteasome subunit alpha type-4 OS=Rattus norvegic... [more]
PSA4_MOUSE2.760e-1834.84Proteasome subunit alpha type-4 OS=Mus musculus GN... [more]
PSA3_ACACA2.760e-1833.12Proteasome subunit alpha type-3 (Fragment) OS=Acan... [more]
PSA6_TOBAC4.708e-1830.48Proteasome subunit alpha type-6 OS=Nicotiana tabac... [more]
PSA6A_ARATH4.708e-1832.62Proteasome subunit alpha type-6-A OS=Arabidopsis t... [more]
PSA4_MACFA4.708e-1834.19Proteasome subunit alpha type-4 OS=Macaca fascicul... [more]
PSA4_DROME4.708e-1831.69Proteasome subunit alpha type-4 OS=Drosophila mela... [more]
PSA71_DROVI8.031e-1833.33Proteasome subunit alpha type-7-1 OS=Drosophila vi... [more]
PSA4_YEAST1.370e-1728.08Proteasome component Y13 OS=Saccharomyces cerevisi... [more]
PSA3_YEAST2.337e-1734.76Proteasome component C1 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH24FM1 TF Citrus clementina cDNA clone KN0AAP8YH24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925345 ID=FC925345; Name=FC925345; organism=Citrus clementina; type=EST; length=649bp
CTGTCGAGAAACTTTTTACTTCACCACTGCTGGAGCCCAGCAGTGTGGAG
AAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGAGTGGATTGAT
TGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAAACTCAGAATC
ATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTACTACACAAGCA
CTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAGAATCCATGTC
TCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCCGACGAGAATGGAC
CTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCAATGCAATGCA
AAGGCTATTGGTTCAAGTTCAGAAGGAGCTGACAGTTCTCTCCAAGAGCA
ATATAACAAGGATTTAACCCTTCAGGAAGCAGAGACAATTGCTCTATCAA
TTTTGAAGCAAGTTATGGAAGAAAAGGTCACTCCAAACAATGTTGATATC
GCAAGGGTAGCTCCAACGTATCATCTCTATACCCCTTCTGAGGTGGAGGC
TGTCATCAATCGCCTATGAGTATCCAGAGAAAATCATCTTTAAAATTTCT
TCCCTGGCTTCAGTGGTGTTTCTTCAGTTCTTTGCAGTGAAAGTGCACT
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