FC925345
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA4_RAT (Proteasome subunit alpha type-4 OS=Rattus norvegicus GN=Psma4 PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.760e-18 Identity = 54/155 (34.84%), Postives = 89/155 (57.42%), Query Frame = 3 Query: 48 EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNK-DLTLQEAETIALSILKQVME-EKVTPNNVDIA 503 EKI +++E + C+++G+ +DA L R+ Q + Y EP+ E ALCD+ + + RPFGVSLL G D++ G LY +DPSG + A IG++S A S L++ Y + ++TL+ A +A+ +L + M+ K++ V+IA Sbjct: 63 EKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAY---TQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAVKVLNKTMDVSKLSAEKVEIA 214
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA4_MOUSE (Proteasome subunit alpha type-4 OS=Mus musculus GN=Psma4 PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.760e-18 Identity = 54/155 (34.84%), Postives = 89/155 (57.42%), Query Frame = 3 Query: 48 EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNK-DLTLQEAETIALSILKQVME-EKVTPNNVDIA 503 EKI +++E + C+++G+ +DA L R+ Q + Y EP+ E ALCD+ + + RPFGVSLL G D++ G LY +DPSG + A IG++S A S L++ Y + ++TL+ A +A+ +L + M+ K++ V+IA Sbjct: 63 EKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAY---TQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAVKVLNKTMDVSKLSAEKVEIA 214
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA3_ACACA (Proteasome subunit alpha type-3 (Fragment) OS=Acanthamoeba castellanii PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.760e-18 Identity = 52/157 (33.12%), Postives = 82/157 (52.23%), Query Frame = 3 Query: 3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE 473 VEKL S +L P++ +I +D H G AMSGL+AD R LV R E ++R YG ++ + + L + + RPFG S+++ D+NGP LY +PSG W AIG + A + +++ ++T +EA A I+ V ++ Sbjct: 48 VEKLLVSKMLVPNTNRRIHTVDRHCGLAMSGLVADGRQLVSRGRAEATSYREFYGTDISGKVLNERLSNFVQLY---SLYGSVRPFGTSVILGCVDKNGPQLYMIEPSGISWGYFGVAIGKGARAAKTEIEKLKLSEMTAREAIKEAAKIIYSVHDD 201
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA6_TOBAC (Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.708e-18 Identity = 57/187 (30.48%), Postives = 98/187 (52.41%), Query Frame = 3 Query: 6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETI--ALSILKQVMEEKVTPNNVDIARVA---PTYHLYTPSEVE 548 +K LL+ +SV + I +++G +G+ ADARTLV+ AR E RF YG M V+ ++ + D + + + + RP GV +I G D E GP L+ DP+G F+ A + GS + A + L+++ D ET+ A+S L+ V++E + +++ V P + + T E++ Sbjct: 53 QKKVPDKLLDQTSVSHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFKYGYEMPVDVLSKWIADKSQVY---TQHAYMRPLGVVAMILGIDEEKGPQLFKCDPAGHFFGHKATSAGSKEQEAINFLEKKMKNDPAFSYEETVQTAISALQSVLQEDFKASEIEVGVVKKEDPIFRVLTTEEID 236
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 4.708e-18 Identity = 61/187 (32.62%), Postives = 96/187 (51.34%), Query Frame = 3 Query: 6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQY--NKDLTLQEAETIALSILKQVMEE--KVTPNNVDIARVA-PTYHLYTPSEVE 548 +K LL+ SSV + I ++IG +G+ ADAR+LV+ AR + RF+YG M V+ + + D + + + + RP GV ++ G D ENGP LY DP+G F+ A + G + A + L+++ N T E A+S L+ V++E K T V + R P + T E+E Sbjct: 53 QKKVPDKLLDQSSVTHLFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVY---TQHAYMRPLGVVAMVMGVDEENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPSFTFDETVQTAISALQSVLQEDFKATEIEVGVVRAENPEFRALTTEEIE 236
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA4_MACFA (Proteasome subunit alpha type-4 OS=Macaca fascicularis GN=PSMA4 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.708e-18 Identity = 53/155 (34.19%), Postives = 89/155 (57.42%), Query Frame = 3 Query: 48 EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNK-DLTLQEAETIALSILKQVME-EKVTPNNVDIA 503 EKI +++E + C+++G+ +DA L R+ Q + Y EP+ E ALCD+ + + RPFGVSLL G D++ G LY +DP+G + A IG++S A S L++ Y + ++TL+ A +A+ +L + M+ K++ V+IA Sbjct: 63 EKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAY---TQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPNGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIA 214
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA4_DROME (Proteasome subunit alpha type-4 OS=Drosophila melanogaster GN=Pros29 PE=1 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 4.708e-18 Identity = 58/183 (31.69%), Postives = 97/183 (53.01%), Query Frame = 3 Query: 48 EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQY----NKDLTLQEAETIALSILKQVME-EKVTPNNVDIARV-----APTYHLYTPSEVEAVINR 563 EKI +++++ C+++G+ +DA L R+ Q ++FSYGE + E LCD+ + + RPFGVSLL G D G LY +DPSG + A IG++ A S L+++ N LTL +A+ +A+ +L ++ K+TP V++A + Y + +VE +I + Sbjct: 63 EKIYRLNDNMVCSVAGITSDANVLTSELRLIAQRYQFSYGEVIPCEQLVSHLCDIKQAY---TQYGGKRPFGVSLLYMGWDNKYGYQLYQSDPSGNYGGWKATCIGNNFGAAISMLKQELADKENVKLTLADAKDLAIKVLSMTLDTTKLTPEKVEMATLQRVDNKTVYSVLEKPDVEKLIEK 242
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA71_DROVI (Proteasome subunit alpha type-7-1 OS=Drosophila virilis GN=Pros28.1 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 8.031e-18 Identity = 56/168 (33.33%), Postives = 94/168 (55.95%), Query Frame = 3 Query: 3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA 503 VEK + L E +V KI +D H+ A +GL DAR L+ A+VE Q+HR + +P+T+E T+ + L ++ + + RPFG+S LI G D +G P L+ T+PSG F++ A A G S++ ++QY ++ E + L+I + + +N+++A Sbjct: 47 VEKKSVAKLQEDRTVRKICVLD-HVVMAFAGL-TDARILINRAQVECQSHRLNVEDPVTLEYITRYIAQLKQKYTQSNGR---RPFGISCLIGGFDADGSPYLFQTEPSGIFYEYKANATGCSAKTVREFFEKQYREEEVSTERGAVKLAIRALLEVAQSGQHNLEVA 209
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA4_YEAST (Proteasome component Y13 OS=Saccharomyces cerevisiae GN=PRE9 PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.370e-17 Identity = 57/203 (28.08%), Postives = 110/203 (54.19%), Query Frame = 3 Query: 6 EKLFTSPLLEP-SSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEK-VTPNNVDIARVAPTYH-------LYTPSEVEAVINRL*VSREN 584 E+ TS LLE +S EK+ ++++ I A++GL ADA L+ AR+ QN+ +Y E + VE + L D+ + + RPFGVS + AG D+ G LY ++PSG + A ++G+++ A + LQ Y D+ + +A +AL L + + +T + ++ A + + ++ P E++ ++ + +++++ Sbjct: 49 ERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGY---TQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVKTGITKKD 248
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA3_YEAST (Proteasome component C1 OS=Saccharomyces cerevisiae GN=PRE10 PE=1 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 2.337e-17 Identity = 57/164 (34.76%), Postives = 81/164 (49.39%), Query Frame = 3 Query: 3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEE----SMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQ---EQYNKDLTLQEAETIALSILKQVMEE 473 VEKL TS LL P KI +D HIGC SGLI D R LV R E + + Y P+ + + A R G+ + + RPFGVS + G D+NG LY +PSG++W A G + A + L+ + + + L+ +EA A I+ E+ Sbjct: 50 VEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPA-------FADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHED 206 The following BLAST results are available for this feature:
BLAST of FC925345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 174
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Sequences
The
following sequences are available for this feature:
EST sequence >FC925345 ID=FC925345; Name=FC925345; organism=Citrus clementina; type=EST; length=649bpback to top |