FC925345

Overview
NameFC925345
Unique NameFC925345
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA1_DICDI (Proteasome subunit alpha type-1 OS=Dictyostelium discoideum GN=psmA1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.052e-17
Identity = 55/163 (33.74%), Postives = 87/163 (53.37%), Query Frame = 3
Query:   48 EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDL----ALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYN--KDLTLQEAETIALSILKQVM---EEKVTPNNVDIARV 509
            +KI  +D+H+G A+SGL ADAR L  + R E  N+ + Y   M VE     + D       R+G        RP+GV LL+AG D+ G  +Y T PSG F+   + +IGS S+ A + L++ +   ++ TL++  T  L  L++ +   ++ +   NV I  V
Sbjct:   61 KKIFVVDDHVGIAISGLTADARMLCNYMRNECSNYNYVYESQMRVERLVTKVADKHQVHTQRYGR-------RPYGVGLLVAGYDQLGAHIYQTCPSGNFYDYKSISIGSRSQSAKTYLEKHFESFEECTLEQLITHGLRALRETIPNTDDTLNSKNVSIGIV 216          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA72_DROME (Proteasome subunit alpha type-7-1A OS=Drosophila melanogaster GN=Pros28.1A PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 6.798e-17
Identity = 51/168 (30.36%), Postives = 90/168 (53.57%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPS-LYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIA 503
            VEK   S + E  +V KI  +D H+  A +GL ADAR L+   +VE Q+HR ++   +T+E  T+ L  L  ++ + +     RPFG+S LI G D +G + L++T+PSG F +  A A G  +       ++ Y+      + + I L++   +   +++   +++A
Sbjct:   47 VEKSSVSEMQEDRTVRKISMLDRHVALAFAGLTADARILINRGQVECQSHRLNFENQVTLEYITRYLAQLKQKYTQCNGR---RPFGISCLIGGIDADGSARLFHTEPSGIFHEYKATATGRWANTVREFFEKAYSDHEVTTKCDAIKLAMRALLEVTQMSQMRLEVA 211          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA3_DICDI (Proteasome subunit alpha type-3 OS=Dictyostelium discoideum GN=psmA3 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 6.798e-17
Identity = 50/160 (31.25%), Postives = 86/160 (53.75%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCD---LALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE 473
            VEKL  S +L   S  ++  ID H+G A++G +ADAR L+  AR E +N++ +YG+P+ ++  +Q +     +   +G        RPFG S+ I G D+ GP L+  +PSG+       ++G   + A + L++    ++T +EA      I+  V +E
Sbjct:   50 VEKLVPSKMLCSGSNRRVHHIDTHVGVAIAGFLADARQLITRARSEAKNYKSTYGQPIPIKVLSQRIASYNHMHTLYGS------VRPFGCSIAITGIDQYGPQLFLVEPSGSCVGYFGASLGKGKQAAKNELEKIKFSEMTCREAIKEVSRIIYSVHDE 203          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA6_SOYBN (Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 8.879e-17
Identity = 54/180 (30.00%), Postives = 94/180 (52.22%), Query Frame = 3
Query:   27 LLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAG-SDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKD--LTLQEAETIALSILKQVMEEKVTPNNVDIARVA---PTYHLYTPSEVE 548
            LL+ +SV  +  I +++G   +G+ ADARTLV+ AR E    RF+YG  M V+   + + D +  +    + +  RP GV  ++ G  DE GP LY  DP+G ++   A + G   + A + L+++   D   T +E    A+S L+ V++E      +++  V    P + + T  E++
Sbjct:   60 LLDNTSVTHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFTYGYEMPVDVLAKWIADKSQVY---TQHAYMRPLGVVAMVLGIDDEYGPQLYKCDPAGHYFGHKATSAGLKDQEAINFLEKKMKNDPSFTYEETVQTAISALQSVLQEDFKATEIEVGVVRKDNPEFRVLTTDEID 236          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA1_MOUSE (Proteasome subunit alpha type-1 OS=Mus musculus GN=Psma1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.406e-16
Identity = 56/183 (30.60%), Postives = 91/183 (49.73%), Query Frame = 3
Query:   48 EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLAL----RFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNK--DLTLQEAETIALSILKQVM--EEKVTPNNVDIARVAP--TYHLYTPSEVEAVINRL 566
            +KI+ +D HIG +++GL ADAR L    R E  + RF +  P+ V      +         R+G        RP+GV LLIAG D+ GP ++ T PS  ++ C A +IG+ S+ A + L+   ++  +  L E     L  L++ +  E+ +T  NV I  V     + +Y   +V   ++ L
Sbjct:   61 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGR-------RPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLDGL 236          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA1_MACFA (Proteasome subunit alpha type-1 OS=Macaca fascicularis GN=PSMA1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.755e-16
Identity = 56/183 (30.60%), Postives = 90/183 (49.18%), Query Frame = 3
Query:   48 EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLAL----RFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNK--DLTLQEAETIALSILKQVM--EEKVTPNNVDIARVAP--TYHLYTPSEVEAVINRL 566
            +KI+ +D HIG +++GL ADAR L    R E  + RF +  P+ V      +         R+G        RP+GV LLIAG D+ GP ++ T PS  ++ C A +IG+ S+ A + L+   ++  +  L E     L  L++ +  E+ +T  NV I  V     + +Y   +V   +  L
Sbjct:   61 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGR-------RPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGL 236          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA1_HUMAN (Proteasome subunit alpha type-1 OS=Homo sapiens GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.755e-16
Identity = 56/183 (30.60%), Postives = 90/183 (49.18%), Query Frame = 3
Query:   48 EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLAL----RFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNK--DLTLQEAETIALSILKQVM--EEKVTPNNVDIARVAP--TYHLYTPSEVEAVINRL 566
            +KI+ +D HIG +++GL ADAR L    R E  + RF +  P+ V      +         R+G        RP+GV LLIAG D+ GP ++ T PS  ++ C A +IG+ S+ A + L+   ++  +  L E     L  L++ +  E+ +T  NV I  V     + +Y   +V   +  L
Sbjct:   61 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGR-------RPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGL 236          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA1_CHICK (Proteasome subunit alpha type-1 OS=Gallus gallus GN=PSMA1 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.755e-16
Identity = 54/162 (33.33%), Postives = 82/162 (50.62%), Query Frame = 3
Query:   48 EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLAL----RFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNK--DLTLQEAETIALSILKQVM--EEKVTPNNVDIARV 509
            +KI+ +D HIG +++GL ADAR L    R E  + RF +  P+ V      +         R+G        RP+GV LLIAG D+ GP ++ T PS  ++ C A +IG+ S+ A + L+    +  D  L E     L  L++ +  E+ +T  NV I  V
Sbjct:   60 KKILYVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGR-------RPYGVGLLIAGYDDMGPHIFQTCPSANYFDCKAMSIGARSQSARNYLERHMTEFTDCNLNELVKHGLRALRETLPAEQDLTTKNVSIGIV 214          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA1_BOVIN (Proteasome subunit alpha type-1 OS=Bos taurus GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.755e-16
Identity = 56/183 (30.60%), Postives = 90/183 (49.18%), Query Frame = 3
Query:   48 EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLAL----RFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNK--DLTLQEAETIALSILKQVM--EEKVTPNNVDIARVAP--TYHLYTPSEVEAVINRL 566
            +KI+ +D HIG +++GL ADAR L    R E  + RF +  P+ V      +         R+G        RP+GV LLIAG D+ GP ++ T PS  ++ C A +IG+ S+ A + L+   ++  +  L E     L  L++ +  E+ +T  NV I  V     + +Y   +V   +  L
Sbjct:   61 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGR-------RPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGL 236          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA3_SCHPO (Probable proteasome subunit alpha type-3 OS=Schizosaccharomyces pombe GN=SPCC1795.04c PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.516e-16
Identity = 52/158 (32.91%), Postives = 78/158 (49.37%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEEK 476
            +EK+ TS LL+P    +I  +D HIG A +G I D + +V+ AR E  + R +YG P+        L +    F      S  RPFGV   +A  D  GP LY  +P+G +W  N  A G   + A + L++     L +++A   A  IL    +E+
Sbjct:   49 LEKVVTSKLLKPRVNNRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLF---TCYSSVRPFGVMSFVATYDSEGPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEKLNFSSLKMKDAVKEAARILYATHDEE 203          
The following BLAST results are available for this feature:
BLAST of FC925345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA1_DICDI3.052e-1733.74Proteasome subunit alpha type-1 OS=Dictyostelium d... [more]
PSA72_DROME6.798e-1730.36Proteasome subunit alpha type-7-1A OS=Drosophila m... [more]
PSA3_DICDI6.798e-1731.25Proteasome subunit alpha type-3 OS=Dictyostelium d... [more]
PSA6_SOYBN8.879e-1730.00Proteasome subunit alpha type-6 OS=Glycine max GN=... [more]
PSA1_MOUSE4.406e-1630.60Proteasome subunit alpha type-1 OS=Mus musculus GN... [more]
PSA1_MACFA5.755e-1630.60Proteasome subunit alpha type-1 OS=Macaca fascicul... [more]
PSA1_HUMAN5.755e-1630.60Proteasome subunit alpha type-1 OS=Homo sapiens GN... [more]
PSA1_CHICK5.755e-1633.33Proteasome subunit alpha type-1 OS=Gallus gallus G... [more]
PSA1_BOVIN5.755e-1630.60Proteasome subunit alpha type-1 OS=Bos taurus GN=P... [more]
PSA3_SCHPO7.516e-1632.91Probable proteasome subunit alpha type-3 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH24FM1 TF Citrus clementina cDNA clone KN0AAP8YH24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925345 ID=FC925345; Name=FC925345; organism=Citrus clementina; type=EST; length=649bp
CTGTCGAGAAACTTTTTACTTCACCACTGCTGGAGCCCAGCAGTGTGGAG
AAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGAGTGGATTGAT
TGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAAACTCAGAATC
ATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTACTACACAAGCA
CTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAGAATCCATGTC
TCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCCGACGAGAATGGAC
CTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCAATGCAATGCA
AAGGCTATTGGTTCAAGTTCAGAAGGAGCTGACAGTTCTCTCCAAGAGCA
ATATAACAAGGATTTAACCCTTCAGGAAGCAGAGACAATTGCTCTATCAA
TTTTGAAGCAAGTTATGGAAGAAAAGGTCACTCCAAACAATGTTGATATC
GCAAGGGTAGCTCCAACGTATCATCTCTATACCCCTTCTGAGGTGGAGGC
TGTCATCAATCGCCTATGAGTATCCAGAGAAAATCATCTTTAAAATTTCT
TCCCTGGCTTCAGTGGTGTTTCTTCAGTTCTTTGCAGTGAAAGTGCACT
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