FC925345

Overview
NameFC925345
Unique NameFC925345
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA1_PONAB (Proteasome subunit alpha type-1 OS=Pongo abelii GN=PSMA1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.516e-16
Identity = 53/162 (32.72%), Postives = 83/162 (51.23%), Query Frame = 3
Query:   48 EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLAL----RFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNK--DLTLQEAETIALSILKQVM--EEKVTPNNVDIARV 509
            +KI+ +D HIG +++GL ADAR L    R E  + RF +  P+ V      +         R+G        RP+GV LLIAG D+ GP ++ T PS  ++ C A +IG+ S+ A + L+   ++  +  L E     L  L++ +  E+ +T  NV I  V
Sbjct:   61 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGR-------RPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIV 215          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA1_TRYCR (Proteasome subunit alpha type-1 OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.817e-16
Identity = 51/148 (34.46%), Postives = 80/148 (54.05%), Query Frame = 3
Query:   21 SPLLEPSSV-EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNK--DLTLQEAETIALSIL 455
            SP+ + SS  EK+ ++D+H+G A++GL+AD R L    R E  N+R+ +     +    + + +   ++    + +  RPFGV LLIAG D  GP LY+T PSG  +   A A+G  S+ A + L++ +    D  L E    AL  L
Sbjct:   52 SPVAQFSSYQEKVFKLDDHVGMAIAGLVADGRMLARFVRTECMNYRYMHDSDNPLPLIAEIVGE---KYQRHIQFAGKRPFGVGLLIAGYDSTGPHLYHTVPSGDVFDFKATAMGLRSQAARTYLEKHFESFPDCGLDELIMHALKAL 196          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA1_RAT (Proteasome subunit alpha type-1 OS=Rattus norvegicus GN=Psma1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 9.817e-16
Identity = 56/183 (30.60%), Postives = 90/183 (49.18%), Query Frame = 3
Query:   48 EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLAL----RFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNK--DLTLQEAETIALSILKQVM--EEKVTPNNVDIARVAP--TYHLYTPSEVEAVINRL 566
            +KI+ +D HIG +++GL ADAR L    R E  + RF +  P+ V      +         R+G        RP+GV LLIAG D+ GP ++ T PS  ++ C A +IG+ S+ A + L+   ++     L E     L  L++ +  E+ +T  NV I  V     + +Y   +V   ++ L
Sbjct:   61 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGR-------RPYGVGLLIAGYDDMGPHVFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMQCNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLDGL 236          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.187e-15
Identity = 51/183 (27.87%), Postives = 92/183 (50.27%), Query Frame = 3
Query:   27 LLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVME-EKVTPNNVDIARVAPT--YHLYTPSEVEAVINRL 566
            L+   + +KI +IDEHI   ++G +ADA++L+++ + E   +R    E +++E+      ++          S   PF V  L+ G DENG  +Y  DPSG        + GS S  A   L+++Y+ +L + EA  +A+  +K  ME +  + N + +A V     + + +  E++  I  L
Sbjct:   34 LIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANIL-------HSSRFYPFIVQTLLGGVDENGAKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIRAIKSAMERDTYSGNGILVATVTEEEGFRMLSEEEIQKRIENL 209          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA6B_ARATH (Proteasome subunit alpha type-6-B OS=Arabidopsis thaliana GN=PAA2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.856e-15
Identity = 53/190 (27.89%), Postives = 91/190 (47.89%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQY--NKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAVINRL 566
            +K     LL+ SSV  +  + +++G   +G+ AD+R+LV+ AR E    RF YG  M  +   + + D +  +    + +  RP GV  ++ G D E GP LY  DP+G F+   A + G   + A + L+++   N   T  E    A+S L+ V++E      +++  V     L+     E +   L
Sbjct:   53 QKKVPDKLLDQSSVSHLFPVTKYLGLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVY---TQHAYMRPLGVVAMVLGIDEERGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPAFTYDETVQTAISALQSVLQEDFKATEIEVGVVRADDPLFRSLRTEEIDEHL 239          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA4L_DROME (Proteasome subunit alpha type-4-like OS=Drosophila melanogaster GN=Prosalpha3T PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.363e-15
Identity = 56/184 (30.43%), Postives = 92/184 (50.00%), Query Frame = 3
Query:   45 VEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQ-EQYNKDL---TLQEAETIALSILKQVM-EEKVTPNNVDIARV-----APTYHLYTPSEVEAVINR 563
            V +I  ++E+I C  +G  AD   LV   R+  Q ++F++GE +  E     LCD+   +    +    RPFGVS L  G D   G  LY +DPSG +    A  IG  S  A   LQ E ++K     +++EA+ +A+ ++   +  + +TP  ++IA V        +H+   +E+  +I R
Sbjct:   61 VPRISWLNENIACCATGNTADGNVLVNQLRMIAQQYQFNFGEMIPCEQLVTNLCDIKQAY---TQYGGKRPFGVSFLYMGWDCRFGFQLYQSDPSGNYSGWKATCIGRKSGAAMEMLQKELFSKGYVSPSVEEAKDVAIKVMGMTLGRDSLTPEKLEIAFVQRYGNTTVFHILEKNEIHRLIER 241          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA3_SPIOL (Proteasome subunit alpha type-3 OS=Spinacia oleracea GN=PAG1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.310e-15
Identity = 49/163 (30.06%), Postives = 78/163 (47.85%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQA------LCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE 473
            VEKL  S ++ P S  +I  +  H G A++GL AD R +V  A+ E  N+   YGE + V+           LC L             RPFG  +++ G D +GP LY  +PSG  ++    AIG   + A + +++    ++T +E       I+ +V +E
Sbjct:   50 VEKLIQSKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVARAKSEATNYESVYGEAVPVKELADRVASYVHLCTLYW---------WLRPFGCGVILGGYDRDGPQLYMVEPSGISYRYFGAAIGKGKQAAKTEIEKLKLSEMTCREGIIEVAKIIYKVHDE 203          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA3_ORYSJ (Proteasome subunit alpha type-3 OS=Oryza sativa subsp. japonica GN=PAG1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.418e-14
Identity = 49/163 (30.06%), Postives = 79/163 (48.47%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQA------LCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE 473
            VEKL TS ++   S  +I  +  H G A++GL AD R +V  A+ E  ++   YGEP++V+           LC L             RPFG  +++ G D +GP LY  +PSG  ++    A+G   + A + +++    +LT +E       I+  V +E
Sbjct:   50 VEKLVTSKMMLEGSNRRIHSVHWHSGLAVAGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYVHLCTLYW---------WLRPFGCGVILGGYDRDGPQLYMIEPSGVSYKYFGAALGKGRQAAKTEIEKLKLSELTCREGIVEVAKIIYGVHDE 203          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA3_MOUSE (Proteasome subunit alpha type-3 OS=Mus musculus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.418e-14
Identity = 51/161 (31.68%), Postives = 84/161 (52.17%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAG-SDENGPSLYYTDPSGT---FWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE 473
            VEKL  S L E  S +++  +D H+G A++GL+ADAR+L + AR E  N R ++G  + ++        +A+        S  RPFG S ++   S  +G  LY  DPSG    +W C   AIG + + A + +++   K++T ++       I+  V +E
Sbjct:   50 VEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADR---VAMYVHAYTLYSAVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYWGC---AIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDE 204          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA3_ARATH (Proteasome subunit alpha type-3 OS=Arabidopsis thaliana GN=PAG1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.418e-14
Identity = 46/163 (28.22%), Postives = 81/163 (49.69%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQA------LCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE 473
            VEKL  S ++ P S  +I  +  H G A++GL AD R +V  A+ E +++   YG+ + V+  ++       LC L             RPFG  +++ G D +GP LY  +PSG  ++    AIG   + A + +++    ++T +E       I+ ++ +E
Sbjct:   50 VEKLIASKMMLPGSNRRIHSVHRHAGMAVAGLAADGRQIVARAKSEARSYESVYGDAVPVKELSERVASYVHLCTLYW---------WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGKQAAKTEIEKLNLSEMTCKEGVIEVAKIIYKLHDE 203          
The following BLAST results are available for this feature:
BLAST of FC925345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA1_PONAB7.516e-1632.72Proteasome subunit alpha type-1 OS=Pongo abelii GN... [more]
PSA1_TRYCR9.817e-1634.46Proteasome subunit alpha type-1 OS=Trypanosoma cru... [more]
PSA1_RAT9.817e-1630.60Proteasome subunit alpha type-1 OS=Rattus norvegic... [more]
PSMB_METTH2.187e-1527.87Proteasome subunit beta OS=Methanobacterium thermo... [more]
PSA6B_ARATH2.856e-1527.89Proteasome subunit alpha type-6-B OS=Arabidopsis t... [more]
PSA4L_DROME6.363e-1530.43Proteasome subunit alpha type-4-like OS=Drosophila... [more]
PSA3_SPIOL8.310e-1530.06Proteasome subunit alpha type-3 OS=Spinacia olerac... [more]
PSA3_ORYSJ2.418e-1430.06Proteasome subunit alpha type-3 OS=Oryza sativa su... [more]
PSA3_MOUSE2.418e-1431.68Proteasome subunit alpha type-3 OS=Mus musculus GN... [more]
PSA3_ARATH2.418e-1428.22Proteasome subunit alpha type-3 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH24FM1 TF Citrus clementina cDNA clone KN0AAP8YH24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925345 ID=FC925345; Name=FC925345; organism=Citrus clementina; type=EST; length=649bp
CTGTCGAGAAACTTTTTACTTCACCACTGCTGGAGCCCAGCAGTGTGGAG
AAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGAGTGGATTGAT
TGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAAACTCAGAATC
ATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTACTACACAAGCA
CTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAGAATCCATGTC
TCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCCGACGAGAATGGAC
CTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCAATGCAATGCA
AAGGCTATTGGTTCAAGTTCAGAAGGAGCTGACAGTTCTCTCCAAGAGCA
ATATAACAAGGATTTAACCCTTCAGGAAGCAGAGACAATTGCTCTATCAA
TTTTGAAGCAAGTTATGGAAGAAAAGGTCACTCCAAACAATGTTGATATC
GCAAGGGTAGCTCCAACGTATCATCTCTATACCCCTTCTGAGGTGGAGGC
TGTCATCAATCGCCTATGAGTATCCAGAGAAAATCATCTTTAAAATTTCT
TCCCTGGCTTCAGTGGTGTTTCTTCAGTTCTTTGCAGTGAAAGTGCACT
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