FC925345

Overview
NameFC925345
Unique NameFC925345
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBR (Proteasome subunit alpha type-1 OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.418e-14
Identity = 45/120 (37.50%), Postives = 65/120 (54.17%), Query Frame = 3
Query:   48 EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLA-LRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQY 404
            EK  ++DEH+G A+SGL+AD R L    R E  N+R+ +      ++    L D+   +     + +  RPFGV LLIAG D  GP LY T PSG  +   A A+G  S+ A + L+  +
Sbjct:   62 EKAFKLDEHVGMAISGLVADGRALSRFLRTECMNYRYMHDS----DAPLVMLADIVGAKHQRHIQFAGKRPFGVGLLIAGYDRQGPRLYQTVPSGDVFDFKATAMGLRSQAARTYLERHF 177          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA3_RAT (Proteasome subunit alpha type-3 OS=Rattus norvegicus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.158e-14
Identity = 51/161 (31.68%), Postives = 84/161 (52.17%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAG-SDENGPSLYYTDPSGT---FWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE 473
            VEKL  S L E  S +++  +D H+G A++GL+ADAR+L + AR E  N R ++G  + ++        +A+        S  RPFG S ++   S  +G  LY  DPSG    +W C   AIG + + A + +++   K++T ++       I+  V +E
Sbjct:   50 VEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADR---VAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGC---AIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDE 204          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA3_BOVIN (Proteasome subunit alpha type-3 OS=Bos taurus GN=PSMA3 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.158e-14
Identity = 51/161 (31.68%), Postives = 84/161 (52.17%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAG-SDENGPSLYYTDPSGT---FWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE 473
            VEKL  S L E  S +++  +D H+G A++GL+ADAR+L + AR E  N R ++G  + ++        +A+        S  RPFG S ++   S  +G  LY  DPSG    +W C   AIG + + A + +++   K++T ++       I+  V +E
Sbjct:   50 VEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADR---VAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGC---AIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDE 204          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA3_HUMAN (Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.124e-14
Identity = 51/161 (31.68%), Postives = 84/161 (52.17%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAG-SDENGPSLYYTDPSGT---FWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSILKQVMEE 473
            VEKL  S L E  S +++  +D H+G A++GL+ADAR+L + AR E  N R ++G  + ++        +A+        S  RPFG S ++   S  +G  LY  DPSG    +W C   AIG + + A + +++   K++T ++       I+  V +E
Sbjct:   50 VEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADR---VAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGC---AIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDE 204          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA6_ORYSJ (Proteasome subunit alpha type-6 OS=Oryza sativa subsp. japonica GN=PAA1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.200e-13
Identity = 53/190 (27.89%), Postives = 91/190 (47.89%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD-ENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKD--LTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHLYTPSEVEAVINRL 566
            +K     LL+ +SV  +  I ++IG   +GL ADAR+LV  AR E    RF +G  M V+   + + D A  +    + +  RP GV  ++ G D E    L+  DP+G F+   A + G   + A + L+++   D   + +E   IA+S L+ V++E      +++  V     ++     E +   L
Sbjct:   53 QKKVPDKLLDHTSVTHLFPITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVY---TQHAYMRPLGVVAMVLGYDEEKNAQLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKDDPQFSYEETVQIAISALQSVLQEDFKATEIEVGVVRKDDRVFRALTTEEIDQHL 239          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA6_DICDI (Proteasome subunit alpha type-6 OS=Dictyostelium discoideum GN=psmA6 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.200e-13
Identity = 43/153 (28.10%), Postives = 83/153 (54.25%), Query Frame = 3
Query:    6 EKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVE--TQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAG-SDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIALSIL 455
            +K     L++P SV  + ++ ++IGC  +G++ D+++    A  E  T +H+F Y  P  V    + + D+A       + + +RP GV++++ G  DE GP L+  DP+G F    A A G   + + + L++++  +  L + ETI +S++
Sbjct:   52 QKKIPDKLIDPKSVTSLYKLTDYIGCVQTGIVPDSKSQASRAIQECATFHHKFGYQIPPNV--LAKRMADIAQL---STQHASARPLGVAMILIGIDDELGPQLFKVDPAGVFTGYKATAAGEKEQESTNFLEKKFKSNPQLSKDETIQVSLI 199          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA3_DROME (Proteasome subunit alpha type-3 OS=Drosophila melanogaster GN=Prosalpha7 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.673e-13
Identity = 52/185 (28.11%), Postives = 93/185 (50.27%), Query Frame = 3
Query:    3 VEKLFTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQE---QYNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPTYHLYTPSEV 545
            VEK+ TS L EP +  +I  I+++IG A++GL+AD   + + AR E  N+R  + + + ++     +      +      S  RPFG+S+++A  DE  GP LY  +PSG+ +   A A G + + A + +++       D  ++ A  I   +  ++ ++        + RV    HL  PSE+
Sbjct:   50 VEKIITSKLYEPDAGGRIFTIEKNIGMAVAGLVADGNFVADIARQEAANYRQQFEQAIPLKHLCHRVAGYVHAY---TLYSAVRPFGLSIILASWDEVEGPQLYKIEPSGSSFGYFACASGKAKQLAKTEMEKLKMDMRTDELVESAGEIIYKVHDELKDKDFRFEMGLVGRVTGGLHLINPSEL 231          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA1_YEAST (Proteasome component PRE5 OS=Saccharomyces cerevisiae GN=PRE5 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.016e-12
Identity = 47/159 (29.56%), Postives = 80/159 (50.31%), Query Frame = 3
Query:   48 EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTL-----QEAETIALSILKQVMEEKVTPNNVDIARV 509
            +KI++ DEH+G +++GL  DAR L  + R +       +   + VE     LCD A +     +    RP+GV LLI G D++G  L    PSG   +    AIG+ S+GA + L+   +  + +     +  +    +I + + +E +T +N+ IA V
Sbjct:   61 KKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQK---NTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIV 216          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.327e-12
Identity = 47/173 (27.17%), Postives = 86/173 (49.71%), Query Frame = 3
Query:   42 SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDP-SGTFWQCNAKAIGSSSEGADSSLQEQYNKDLTLQEAETIAL-SILKQVMEEKVTPNNVDIARVA-PTYHLYTPSEVEA 551
            + +K+ +ID+ +G   +G + DA+ LV    VE+Q ++    E MT++  T  + +   R       +   P  V LLI G D+NGP +Y  D   G+  +    A GS S  A   L++QY +++T++E   +A+ +I      +  +  N+D+  +    +    P EV++
Sbjct:   39 TAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRDESMTIKGITTLMSNFLSR-------NRYYPMMVQLLIGGVDKNGPGIYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRENMTVKEGLDLAIRAIHNATKRDSASGENIDVVVITKEAFKRLDPEEVKS 204          
BLAST of FC925345 vs. ExPASy Swiss-Prot
Match: PSA1_SCHPO (Probable proteasome subunit alpha type-1 OS=Schizosaccharomyces pombe GN=SPAC6G10.04c PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.327e-12
Identity = 49/179 (27.37%), Postives = 93/179 (51.96%), Query Frame = 3
Query:   48 EKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSSSEGADSSLQEQYN--KDLTLQEAETIALSILKQVM--EEKVTPNNVDIARVA--PTYHLYTPSEVEAVINRL 566
            +K++ ID+HIG A++GL  DAR L  + + E  + +  +  P+ V    + +  +A +     +E   RP+GV  L+ G DE+GP L    PSG   +    ++GS S+ A + ++   +   D + +E    AL  L+  +  ++++T  NV I+ +     Y LY  ++ +  +++L
Sbjct:   61 KKLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVR---RLMSKVAEKAQINTQEYGRRPYGVGFLVIGYDESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPDSSREELILSALRALRDTLSKDQELTEENVSISVIGKDEKYTLYDQNDTKEWLDKL 236          
The following BLAST results are available for this feature:
BLAST of FC925345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSA1_TRYBR2.418e-1437.50Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSA3_RAT3.158e-1431.68Proteasome subunit alpha type-3 OS=Rattus norvegic... [more]
PSA3_BOVIN3.158e-1431.68Proteasome subunit alpha type-3 OS=Bos taurus GN=P... [more]
PSA3_HUMAN4.124e-1431.68Proteasome subunit alpha type-3 OS=Homo sapiens GN... [more]
PSA6_ORYSJ1.200e-1327.89Proteasome subunit alpha type-6 OS=Oryza sativa su... [more]
PSA6_DICDI1.200e-1328.10Proteasome subunit alpha type-6 OS=Dictyostelium d... [more]
PSA3_DROME2.673e-1328.11Proteasome subunit alpha type-3 OS=Drosophila mela... [more]
PSA1_YEAST1.016e-1229.56Proteasome component PRE5 OS=Saccharomyces cerevis... [more]
PSMB_METTE1.327e-1227.17Proteasome subunit beta OS=Methanosarcina thermoph... [more]
PSA1_SCHPO1.327e-1227.37Probable proteasome subunit alpha type-1 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP8YH24FM1 TF Citrus clementina cDNA clone KN0AAP8YH24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925345 ID=FC925345; Name=FC925345; organism=Citrus clementina; type=EST; length=649bp
CTGTCGAGAAACTTTTTACTTCACCACTGCTGGAGCCCAGCAGTGTGGAG
AAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGAGTGGATTGAT
TGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAAACTCAGAATC
ATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTACTACACAAGCA
CTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAGAATCCATGTC
TCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCCGACGAGAATGGAC
CTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCAATGCAATGCA
AAGGCTATTGGTTCAAGTTCAGAAGGAGCTGACAGTTCTCTCCAAGAGCA
ATATAACAAGGATTTAACCCTTCAGGAAGCAGAGACAATTGCTCTATCAA
TTTTGAAGCAAGTTATGGAAGAAAAGGTCACTCCAAACAATGTTGATATC
GCAAGGGTAGCTCCAACGTATCATCTCTATACCCCTTCTGAGGTGGAGGC
TGTCATCAATCGCCTATGAGTATCCAGAGAAAATCATCTTTAAAATTTCT
TCCCTGGCTTCAGTGGTGTTTCTTCAGTTCTTTGCAGTGAAAGTGCACT
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